View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0547_low_93 (Length: 293)
Name: NF0547_low_93
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0547_low_93 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 47058995 - 47058726
Alignment:
| Q |
1 |
actgaagtcataacgaattgtttgaatccagaatggatagaaaaaattaacattgtatttcatttcgagattgtgcaaccacttgtgtaagctatccttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47058995 |
actgaagtcataacgaattgtttgaatccagaatggatagaaaaaattaacattgcatttcatttcgagattgtgcaaccacttgtgtaagctatccttc |
47058896 |
T |
|
| Q |
101 |
atcttcctaaggtttcatgtgtatatagctattagattacaagacttctttctgatttgatttatatgtaactatctctct--------cccttattttg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
47058895 |
atcttcctaaggtttcatgtgtatatagctattagattacaagacttctttctgatttgatttatatgtaactctctctctctctctcccccttattttg |
47058796 |
T |
|
| Q |
193 |
ctttctttcagatttcatgtgtatgacattgacacaacatatcatggcgtttccactaaggtttgtttgttt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47058795 |
ctttctttcagatttcatgtgtatgacattgacac--catattatggcgtttccactaaggtttgtttgttt |
47058726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47077017 - 47076914
Alignment:
| Q |
1 |
actgaagtcataacgaattgtttgaatccagaatggatagaaaaaattaacattgtatttcatttcgagattgtgcaaccacttgtgtaagctatccttc |
100 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||| |||||| | |
|
|
| T |
47077017 |
actgaagtcataccaaattctttgaatccagaatggatagaaaaaattagtattgcatttcattttgagatggtgcaaccacttgtgtaagttatcctcc |
47076918 |
T |
|
| Q |
101 |
atct |
104 |
Q |
| |
|
|||| |
|
|
| T |
47076917 |
atct |
47076914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 47076807 - 47076724
Alignment:
| Q |
175 |
tctctctcccttattttgctttctttcagatttcatgtgtatgacattgacacaacatatcatggcgtttccactaaggtttgt |
258 |
Q |
| |
|
|||||| |||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||| | ||| |||| ||||||||| |
|
|
| T |
47076807 |
tctctccccctcattttgctatctttcaggtttcatgtgtatgacattgacacaaaatatcatcgtgttcccaccaaggtttgt |
47076724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 18229212 - 18229311
Alignment:
| Q |
1 |
actgaagtcataacgaattgtttgaatccagaatggatagaaaaaattaacattgtatttcatttcgagattgtgcaaccacttgtgtaagctatccttc |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18229212 |
actgaagtcataacgaacagtttaaatccagaatggatagagaaaattaatattgcatttcatttcgagattgtgcaaccacttgtgtaagctattcttc |
18229311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 18229389 - 18229457
Alignment:
| Q |
190 |
ttgctttctttcagatttcatgtgtatgacattgacacaacatatcatggcgtttccactaaggtttgt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||| ||||||||| |
|
|
| T |
18229389 |
ttgctttctttcagatttcatgtgtatgacattgacacatcatatcacggtgttcccaccaaggtttgt |
18229457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1724 times since January 2019
Visitors: 3673