View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0547_low_98 (Length: 284)

Name: NF0547_low_98
Description: NF0547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0547_low_98
NF0547_low_98
[»] chr1 (20 HSPs)
chr1 (67-275)||(26821378-26821586)
chr1 (69-270)||(50979242-50979443)
chr1 (71-275)||(38843151-38843355)
chr1 (71-270)||(15353228-15353427)
chr1 (72-275)||(36496053-36496256)
chr1 (69-275)||(38627536-38627742)
chr1 (70-275)||(7593205-7593410)
chr1 (71-275)||(51488497-51488701)
chr1 (72-275)||(5271505-5271708)
chr1 (71-275)||(27000268-27000472)
chr1 (75-257)||(27575898-27576081)
chr1 (148-247)||(47655888-47655987)
chr1 (147-217)||(11051192-11051262)
chr1 (182-244)||(1762251-1762313)
chr1 (149-247)||(6706132-6706230)
chr1 (149-247)||(13509940-13510038)
chr1 (147-244)||(11829075-11829172)
chr1 (149-247)||(46406421-46406519)
chr1 (149-247)||(35604814-35604912)
chr1 (147-212)||(46033716-46033781)
[»] chr3 (21 HSPs)
chr3 (69-275)||(51129016-51129222)
chr3 (71-275)||(47141403-47141607)
chr3 (71-275)||(47696999-47697203)
chr3 (71-269)||(1527531-1527729)
chr3 (71-275)||(52691927-52692131)
chr3 (70-275)||(38469067-38469272)
chr3 (149-247)||(33025798-33025896)
chr3 (149-247)||(42074392-42074490)
chr3 (149-248)||(53687376-53687475)
chr3 (149-247)||(51229727-51229825)
chr3 (149-218)||(51407464-51407533)
chr3 (151-247)||(48181071-48181167)
chr3 (167-245)||(11263709-11263787)
chr3 (149-247)||(42274518-42274616)
chr3 (149-247)||(45150598-45150696)
chr3 (149-245)||(48254506-48254602)
chr3 (149-247)||(28182370-28182468)
chr3 (182-244)||(30809842-30809904)
chr3 (149-247)||(31813401-31813499)
chr3 (182-244)||(44610827-44610889)
chr3 (182-244)||(44328692-44328754)
[»] chr2 (18 HSPs)
chr2 (69-275)||(44282492-44282698)
chr2 (66-275)||(40254339-40254548)
chr2 (71-275)||(31786699-31786903)
chr2 (71-275)||(14379660-14379864)
chr2 (80-275)||(31686789-31686984)
chr2 (75-275)||(2443667-2443868)
chr2 (149-247)||(37640761-37640859)
chr2 (149-247)||(37996718-37996816)
chr2 (152-247)||(3739048-3739143)
chr2 (149-247)||(7473518-7473616)
chr2 (149-247)||(17480814-17480912)
chr2 (183-244)||(37551592-37551653)
chr2 (149-247)||(14033372-14033470)
chr2 (149-247)||(43342277-43342375)
chr2 (149-247)||(13892752-13892850)
chr2 (149-247)||(14032877-14032975)
chr2 (149-247)||(35458185-35458283)
chr2 (186-244)||(44002684-44002742)
[»] chr4 (22 HSPs)
chr4 (69-270)||(24038068-24038269)
chr4 (71-275)||(31431037-31431241)
chr4 (69-275)||(24246538-24246744)
chr4 (69-275)||(39382959-39383165)
chr4 (72-275)||(18140375-18140578)
chr4 (72-275)||(49127588-49127791)
chr4 (84-270)||(51834225-51834412)
chr4 (149-247)||(53404111-53404209)
chr4 (149-247)||(45105807-45105904)
chr4 (149-247)||(52058252-52058350)
chr4 (154-247)||(30418397-30418490)
chr4 (149-245)||(22606362-22606458)
chr4 (147-217)||(28911579-28911649)
chr4 (149-247)||(38767791-38767889)
chr4 (150-247)||(53663635-53663732)
chr4 (149-245)||(28963870-28963966)
chr4 (182-244)||(16203097-16203159)
chr4 (182-244)||(39732843-39732905)
chr4 (182-244)||(50523874-50523936)
chr4 (149-221)||(49723784-49723855)
chr4 (182-244)||(5937846-5937908)
chr4 (156-221)||(26457118-26457183)
[»] chr8 (15 HSPs)
chr8 (71-275)||(30984303-30984507)
chr8 (71-270)||(30210394-30210593)
chr8 (71-275)||(34774349-34774553)
chr8 (115-225)||(629476-629586)
chr8 (212-275)||(189774-189837)
chr8 (212-275)||(717378-717441)
chr8 (212-275)||(878485-878548)
chr8 (149-247)||(35164381-35164474)
chr8 (149-247)||(35802344-35802442)
chr8 (147-217)||(924099-924169)
chr8 (71-114)||(308872-308915)
chr8 (149-247)||(45276403-45276501)
chr8 (149-247)||(8416662-8416760)
chr8 (149-221)||(36821653-36821725)
chr8 (182-244)||(3590107-3590169)
[»] chr7 (14 HSPs)
chr7 (71-275)||(31012404-31012608)
chr7 (71-269)||(25341452-25341650)
chr7 (126-257)||(41064585-41064717)
chr7 (1-68)||(35422288-35422355)
chr7 (149-247)||(25970433-25970531)
chr7 (147-244)||(39857075-39857172)
chr7 (148-247)||(37371078-37371177)
chr7 (149-247)||(14999868-14999966)
chr7 (149-247)||(30825190-30825288)
chr7 (151-247)||(26826384-26826480)
chr7 (149-247)||(25472765-25472863)
chr7 (149-247)||(12909229-12909327)
chr7 (149-247)||(43664814-43664912)
chr7 (182-244)||(19544572-19544634)
[»] chr5 (19 HSPs)
chr5 (72-275)||(29542443-29542646)
chr5 (69-275)||(42663354-42663560)
chr5 (66-275)||(3260840-3261049)
chr5 (69-275)||(33114954-33115160)
chr5 (72-275)||(14082814-14083017)
chr5 (147-244)||(2526282-2526379)
chr5 (149-221)||(53693-53765)
chr5 (149-247)||(27739351-27739449)
chr5 (151-248)||(8958502-8958599)
chr5 (149-246)||(37066560-37066657)
chr5 (149-246)||(41040137-41040234)
chr5 (149-247)||(7073275-7073373)
chr5 (149-247)||(21022632-21022730)
chr5 (149-247)||(33229204-33229302)
chr5 (149-247)||(39236896-39236994)
chr5 (182-221)||(40979452-40979491)
chr5 (182-244)||(10900165-10900227)
chr5 (149-247)||(19356501-19356599)
chr5 (182-244)||(19375409-19375471)
[»] chr6 (8 HSPs)
chr6 (69-270)||(30018771-30018972)
chr6 (75-257)||(31746179-31746359)
chr6 (147-244)||(4146810-4146907)
chr6 (149-247)||(21517357-21517455)
chr6 (182-221)||(30134180-30134219)
chr6 (149-247)||(365591-365689)
chr6 (182-244)||(20838498-20838560)
chr6 (182-244)||(27825057-27825119)
[»] scaffold0069 (1 HSPs)
scaffold0069 (149-217)||(16815-16883)
[»] scaffold0006 (1 HSPs)
scaffold0006 (150-247)||(91535-91634)
[»] scaffold0808 (1 HSPs)
scaffold0808 (149-247)||(4090-4188)
[»] scaffold0068 (1 HSPs)
scaffold0068 (149-245)||(37697-37791)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 26821378 - 26821586
Alignment:
Q  67 actaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821378 actaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 26821477  T
Q  167 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821478 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 26821577  T
Q  267 catctctgc 275  Q
    |||| ||||    
T  26821578 catccctgc 26821586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 69 - 270
Target Start/End: Complemental strand, 50979443 - 50979242
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979443 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 50979344  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979343 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 50979244  T
Q  269 tc 270  Q
    ||    
T  50979243 tc 50979242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 38843151 - 38843355
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843151 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 38843250  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843251 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 38843350  T
Q  271 tctgc 275  Q
     ||||    
T  38843351 cctgc 38843355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 71 - 270
Target Start/End: Original strand, 15353228 - 15353427
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353228 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 15353327  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353328 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 15353427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 275
Target Start/End: Complemental strand, 36496256 - 36496053
Alignment:
Q  72 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496256 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 36496157  T
Q  172 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36496156 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 36496057  T
Q  272 ctgc 275  Q
    ||||    
T  36496056 ctgc 36496053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 275
Target Start/End: Original strand, 38627536 - 38627742
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627536 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 38627635  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38627636 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 38627735  T
Q  269 tctctgc 275  Q
    || ||||    
T  38627736 tccctgc 38627742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 70 - 275
Target Start/End: Complemental strand, 7593410 - 7593205
Alignment:
Q  70 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7593410 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 7593311  T
Q  170 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7593310 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctccaccctcaattctattaattccat 7593211  T
Q  270 ctctgc 275  Q
    | ||||    
T  7593210 ccctgc 7593205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 51488701 - 51488497
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51488701 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaa 51488602  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488601 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 51488502  T
Q  271 tctgc 275  Q
     ||||    
T  51488501 cctgc 51488497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 72 - 275
Target Start/End: Complemental strand, 5271708 - 5271505
Alignment:
Q  72 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271708 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 5271609  T
Q  172 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5271608 agcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 5271509  T
Q  272 ctgc 275  Q
    ||||    
T  5271508 ctgc 5271505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 27000472 - 27000268
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27000472 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatatttggtttggcttttcaaaa 27000373  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000372 tagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 27000273  T
Q  271 tctgc 275  Q
     ||||    
T  27000272 cctgc 27000268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 27575898 - 27576081
Alignment:
Q  75 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 173  Q
    |||||||||||||||||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||| ||||||| ||| |    
T  27575898 tctgtttggtttggcttttgtacagctagaagcaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttgacttttcataattg 27575997  T
Q  174 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 257  Q
    ||| ||||||||||||||||||||   | ||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  27575998 cttctatcctccaaaagcaattctccataaagttacaatttttagcttctgacttttctagaatcaattctacaccctcaattc 27576081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 47655987 - 47655888
Alignment:
Q  148 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  47655987 atgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctaca 47655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 11051262 - 11051192
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 217  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||| | |||||| ||||||||||||    
T  11051262 catgtttggtttgacttttcaaaattgcttctatcctccaaaaacaattatggttgaatctacaattccta 11051192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 1762251 - 1762313
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||    
T  1762251 ctccaaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattct 1762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 6706132 - 6706230
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||| ||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  6706132 tgtttagtttggcttttaagaattgattctatcctccaaaaacaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 6706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 13510038 - 13509940
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||| |||||| | ||| | || |||||||||||||||||| |  || |||||| || |||||||||||  |||| |||||||||||||||||    
T  13510038 tgtttggtttagcttttaagaattgattctatcctccaaaagcaattatccttaaagctataaatcctagcttctagcttttctagaatcaattctaca 13509940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 11829075 - 11829172
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    ||||||||||||| ||||| | ||| |||| |||||||||||||||||||| | ||||| || |||||||| ||| | | ||  ||||||||||||||    
T  11829075 catgtttggtttgccttttaagaattgcttctatcctccaaaagcaattctggatgaaggtataattcctaacttttgagttaactagaatcaattct 11829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 46406421 - 46406519
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| || |||||| |  ||||  ||||||||||||||||    
T  46406421 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcttagcttttggcttttgtagaatcaattctaca 46406519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 35604814 - 35604912
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||| |||| ||||| | ||| |||| |||||||||||| ||||| |  |||||||||||| |  |||||| | |||||  ||||||||||||||||    
T  35604814 tgtttgatttgacttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatattagcttttgacttttgtagaatcaattctaca 35604912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 46033781 - 46033716
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaat 212  Q
    |||||||| |||| ||||||||||| |||| |||||| ||||| |||||||  |||||| ||||||    
T  46033781 catgtttgatttgacttttcaaaattgcttctatccttcaaaaacaattctcattgaagttacaat 46033716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 69 - 275
Target Start/End: Complemental strand, 51129222 - 51129016
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129222 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 51129123  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129122 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 51129023  T
Q  269 tctctgc 275  Q
    || ||||    
T  51129022 tccctgc 51129016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 47141607 - 47141403
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141607 agcctctgtttggtttggcatttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 47141508  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47141507 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcttagaatcaattctacaccctcaattctattaattccatc 47141408  T
Q  271 tctgc 275  Q
     ||||    
T  47141407 cctgc 47141403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 47696999 - 47697203
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47696999 agcctctgtttggtttggcttttgcaaagccagaatcaattctgaagcatttcaaaagcaattctgcaatatttaacatgtttggtttgccttttcaaaa 47697098  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697099 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 47697198  T
Q  271 tctgc 275  Q
     ||||    
T  47697199 cctgc 47697203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 71 - 269
Target Start/End: Original strand, 1527531 - 1527729
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  1527531 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaac 1527630  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527631 tagcttttatcctccgaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 1527729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 52691927 - 52692131
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  52691927 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttaaaaa 52692026  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692027 tagattttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatc 52692126  T
Q  271 tctgc 275  Q
     ||||    
T  52692127 cctgc 52692131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 38469067 - 38469272
Alignment:
Q  70 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  38469067 aagcctctgtttggtttggcttttgcaaagccagaatcaattatggagcatttcaaaagcaattctgcaatatttaacatgtttggtttaccttttcaaa 38469166  T
Q  170 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 269  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38469167 atagtttttatcctccaaaagcaattctagttgaagctacaattcttagcttcttactttcctataatcaattctacaccctcaattctattaattccat 38469266  T
Q  270 ctctgc 275  Q
    | ||||    
T  38469267 ccctgc 38469272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 33025896 - 33025798
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||  || ||||||||||||||||||| |  |||||||| |||||||||||||    
T  33025896 tgtttggtttgacttttcaaaattgcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctaca 33025798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 42074392 - 42074490
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||||| ||| |||| |||||||||||| |||||||  || ||||||||||||||||||| | ||||| || ||||||||||||||    
T  42074392 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctaca 42074490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 248
Target Start/End: Complemental strand, 53687475 - 53687376
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 248  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||||| ||| |||||||||||||||| || |  |||| ||| ||||||||||||||    
T  53687475 tgtttggtttgacttttcataattgcttctatcctccaaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacac 53687376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 51229727 - 51229825
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||| |||||||||||| |||| ||||||||||||  ||||||  || ||||||||||||||| ||| |  ||||||||||||||||||||||    
T  51229727 tgtttggtttagcttttcaaaattgcttctatcctccaaaaataattctccttaaagctacaattcctaacttttggctttcctagaatcaattctaca 51229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 51407464 - 51407533
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctag 218  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| | ||||||||||||||| ||||    
T  51407464 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattttggttgaagctacaatttctag 51407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 48181071 - 48181167
Alignment:
Q  151 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||| | ||| | ||| |||| ||||||||||||||||||||  || || |||||||||||||||| |  ||||||||||||||||||||||    
T  48181071 tttggtttgacattttagaattgcttctatcctccaaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctaca 48181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 11263709 - 11263787
Alignment:
Q  167 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 245  Q
    ||||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  11263709 aaaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattcta 11263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 42274518 - 42274616
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||| |||||||||| | ||| | || ||||||||||||||||||||  || ||| ||||||||||||||| |  ||||| ||||||||||||||||    
T  42274518 tgtttgatttggctttttagaattgattctatcctccaaaagcaattctccttaaagttacaattcctagcttttggctttcatagaatcaattctaca 42274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 45150598 - 45150696
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  |||||||||||| ||||||||| |   |||||||||||||||||||||    
T  45150598 tgtttggtttggcttttaagaattgtttctatcctccaaaaacaattatccttgaagctacaaatcctagcttttggttttcctagaatcaattctaca 45150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 48254602 - 48254506
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 245  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||    
T  48254602 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattcta 48254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 28182370 - 28182468
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| |||| |||||||||| ||||||| |  || |||||| |||||||| ||| |  |||||||| |||||||||||||    
T  28182370 tgtttggtttggctttttagaattgcttctatcctccaacagcaattatccttaaagctaaaattcctaacttttggctttcctataatcaattctaca 28182468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 30809842 - 30809904
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  30809842 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 30809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 31813401 - 31813499
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||| ||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  31813401 tgtttagtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 31813499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 44610889 - 44610827
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| ||||||||||||||| ||||||| | | |||  |||||||||||||    
T  44610889 ctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattct 44610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 44328692 - 44328754
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44328692 ctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattct 44328754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 69 - 275
Target Start/End: Original strand, 44282492 - 44282698
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282492 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 44282591  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282592 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 44282691  T
Q  269 tctctgc 275  Q
    || ||||    
T  44282692 tccctgc 44282698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 66 - 275
Target Start/End: Original strand, 40254339 - 40254548
Alignment:
Q  66 aactaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 165  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254339 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 40254438  T
Q  166 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254439 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 40254538  T
Q  266 ccatctctgc 275  Q
    ||||| ||||    
T  40254539 ccatccctgc 40254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 31786699 - 31786903
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786699 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31786798  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786799 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31786898  T
Q  271 tctgc 275  Q
     ||||    
T  31786899 cctgc 31786903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 14379660 - 14379864
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379660 agcctccgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 14379759  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379760 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 14379859  T
Q  271 tctgc 275  Q
     ||||    
T  14379860 cctgc 14379864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 80 - 275
Target Start/End: Complemental strand, 31686984 - 31686789
Alignment:
Q  80 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686984 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 31686885  T
Q  180 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31686884 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 31686789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 75 - 275
Target Start/End: Complemental strand, 2443868 - 2443667
Alignment:
Q  75 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 173  Q
    |||||||||||||||||||| | |||  ||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||||||||||| ||| |    
T  2443868 tctgtttggtttggcttttgtacagctggaaacaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttggcttttcagaattg 2443769  T
Q  174 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctct 273  Q
    ||| |||||||||||| |||||||   | ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||| || ||||||||| ||    
T  2443768 cttctatcctccaaaaacaattctccataaagctacaattcctagcttatgccttttctagaatcaattctacaccctcaattccatcaattccatcact 2443669  T
Q  274 gc 275  Q
    ||    
T  2443668 gc 2443667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 37640859 - 37640761
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||  | ||| |||| |||||||||||||||||| |  |||||||||||| || |||||| |  ||||||||||||||||||||||    
T  37640859 tgtttggtttggctttcaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctaca 37640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 37996718 - 37996816
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||||| ||| |||| ||||||||||||| |||||   || ||||||||||||||| ||| |  ||||||| ||||||||||||||    
T  37996718 tgtttggtttggcttttcataattgcttctatcctccaaaagtaattcaccttaaagctacaattcctaacttttggctttccttgaatcaattctaca 37996816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 3739143 - 3739048
Alignment:
Q  152 ttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||| |  || |||||||||||||||  || | |||||| ||||||||||||||||    
T  3739143 ttggtttggcttttcataattgcttctatcatccaaaagcaattttccttaaagctacaattcctaatttttgactttcttagaatcaattctaca 3739048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 7473518 - 7473616
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||||| |||| | ||| |||| |||||||||||| ||||| |  |||||||||||| ||||| ||| |  |||||| |||||||||||||||    
T  7473518 tgtttggtttggtttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatcctaacttttggctttccaagaatcaattctaca 7473616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 17480814 - 17480912
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||| ||||||||||| | ||| | || |||||| ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  17480814 tgtttagtttggcttttaagaattgattctatccttcaaaagcaattatctttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 17480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 37551592 - 37551653
Alignment:
Q  183 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    ||||||||||||||| |||||||||||||||||||| |||| | ||  ||||||||||||||    
T  37551592 tccaaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattct 37551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 14033372 - 14033470
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14033372 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 43342375 - 43342277
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||| ||||| |||| | ||| | || |||||||||||||||||| |  || ||||||||| | |||||||||  |||| |||||||||||||||||    
T  43342375 tgtttgatttggtttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaattctagcttctagcttttctagaatcaattctaca 43342277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 13892752 - 13892850
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  13892752 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 13892850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 14032877 - 14032975
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14032877 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14032975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 35458283 - 35458185
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || || |||||| ||||| |||||  |||| |||||||||||||||||    
T  35458283 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaaactacaaatcctaacttctagcttttctagaatcaattctaca 35458185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 44002684 - 44002742
Alignment:
Q  186 aaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44002684 aaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 44002742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 69 - 270
Target Start/End: Complemental strand, 24038269 - 24038068
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038269 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 24038170  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 24038070  T
Q  269 tc 270  Q
    ||    
T  24038069 tc 24038068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 31431241 - 31431037
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431241 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31431142  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431141 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31431042  T
Q  271 tctgc 275  Q
     ||||    
T  31431041 cctgc 31431037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 275
Target Start/End: Original strand, 24246538 - 24246744
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24246538 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattatgcaatatttaacatgtttggtttggcttttcaa 24246637  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246638 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 24246737  T
Q  269 tctctgc 275  Q
    || ||||    
T  24246738 tccctgc 24246744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 275
Target Start/End: Complemental strand, 39383165 - 39382959
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383165 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 39383066  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383065 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattcca 39382966  T
Q  269 tctctgc 275  Q
    || ||||    
T  39382965 tccctgc 39382959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 18140375 - 18140578
Alignment:
Q  72 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18140375 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 18140474  T
Q  172 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 271  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18140475 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 18140574  T
Q  272 ctgc 275  Q
    ||||    
T  18140575 ctgc 18140578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 49127588 - 49127791
Alignment:
Q  72 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49127588 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 49127687  T
Q  172 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 271  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49127688 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 49127787  T
Q  272 ctgc 275  Q
    ||||    
T  49127788 ctgc 49127791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 270
Target Start/End: Complemental strand, 51834412 - 51834225
Alignment:
Q  84 tttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcc 182  Q
    |||| |||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||    
T  51834412 tttgacttttgtacagctagaagcaattctataacattccaaaagcaattctacaacattctaatatgtttggtttgacttttcagaattgcttctatcc 51834313  T
Q  183 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    |||||||||||||||   | ||||||||||||||| |||||  |||| |||||||||||| ||||| |||||||| || |||||||||    
T  51834312 tccaaaagcaattctccataaagctacaattcctaacttctggcttttctagaatcaattatacactctcaattccatcaattccatc 51834225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 53404209 - 53404111
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||| |   |||||||||||||||| ||||    
T  53404209 tgtttggtttggcttttaagcatagcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttaca 53404111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 45105807 - 45105904
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||  || |||||| ||||| |||||| || |||| |||||||||||||||||    
T  45105807 tgtttggtttggcttttcagaattgcttatatcctccagaagcaattcttcttaaagctaaaattcatagctt-ttgcttttctagaatcaattctaca 45105904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 52058350 - 52058252
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  52058350 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 52058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 30418490 - 30418397
Alignment:
Q  154 ggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||||| ||||| | || |||||||||||||||||| |  || ||||||||| ||||| ||| |  ||||||||||||||||||||||    
T  30418490 ggtttggcttttaaaaattgattctatcctccaaaagcaattatccttcaagctacaaatcctaacttttagctttcctagaatcaattctaca 30418397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 22606458 - 22606362
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 245  Q
    ||||||||||  ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| | ||||||| |||||||||||||    
T  22606458 tgtttggtttaacttttaagaattgcttctatcctccaaaagcaattattcgtgaagctacaaatcctagcttttgactttccaagaatcaattcta 22606362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 28911579 - 28911649
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 217  Q
    ||||||||||||||||| ||| ||| |||| || ||||||||||||||| | | |||||||||||||||||    
T  28911579 catgtttggtttggcttatcagaattgcttctaccctccaaaagcaattgtggatgaagctacaattccta 28911649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 38767791 - 38767889
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||||  ||||| || |  |||||| |||||||||||||||    
T  38767791 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaagcctagtttttggctttccaagaatcaattctaca 38767889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 53663732 - 53663635
Alignment:
Q  150 gtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||||||||| ||| |  |||||||| |||||||||||||    
T  53663732 gtttgatttggctttttagaattgattctatcctccaaaagcaattatccttaaagctacaattcctaacttttggctttcctataatcaattctaca 53663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 28963966 - 28963870
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 245  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||    
T  28963966 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattattcttaaagctacaaatcctaacttctagcttttctagaatcaattcta 28963870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 16203159 - 16203097
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||| | ||||||||||||||||||||||| | | ||  ||||||||||||||    
T  16203159 ctccaaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattct 16203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 39732843 - 39732905
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  39732843 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 39732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 50523936 - 50523874
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  50523936 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 50523874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 49723784 - 49723855
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 221  Q
    ||||||||||||||||| | ||| | || ||||||||||||| |||||| ||| |||||||||||| ||||||    
T  49723784 tgtttggtttggcttttaagaattgtttctatcctccaaaag-aattctcgttaaagctacaattcttagctt 49723855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 5937908 - 5937846
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  5937908 ctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattct 5937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 26457118 - 26457183
Alignment:
Q  156 tttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 221  Q
    |||| ||||||| ||| ||||||||||||||||| |||||    |||||||||||||| |||||||    
T  26457118 tttgacttttcagaattgcttttatcctccaaaaacaatttcgattgaagctacaatttctagctt 26457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 30984507 - 30984303
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984507 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30984408  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984407 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30984308  T
Q  271 tctgc 275  Q
     ||||    
T  30984307 cctgc 30984303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 71 - 270
Target Start/End: Original strand, 30210394 - 30210593
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210394 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30210493  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210494 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 34774553 - 34774349
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34774553 agcctctgtttggtttggcttttgcaaagccagaatcaattttggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 34774454  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774453 tagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 34774354  T
Q  271 tctgc 275  Q
     ||||    
T  34774353 cctgc 34774349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 629586 - 629476
Alignment:
Q  115 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629586 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 629487  T
Q  215 ctagcttctta 225  Q
    |||||||||||    
T  629486 ctagcttctta 629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 189774 - 189837
Alignment:
Q  212 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 275  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  189774 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 717378 - 717441
Alignment:
Q  212 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 275  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  717378 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 717441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 878485 - 878548
Alignment:
Q  212 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 275  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  878485 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 878548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 35164474 - 35164381
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  35164474 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 35164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 35802442 - 35802344
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| ||||| |||| |||||||||||||||||| |  |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  35802442 tgtttggtttgacttttaaaaattgcttctatcctccaaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctaca 35802344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 924099 - 924169
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 217  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||| |||||||||| |||||||||||||||    
T  924099 catgtttggtttgacttttcaaaattgcttctatactccaaaagtaattctagttaaagctacaattccta 924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 308872 - 308915
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  308872 agcctctgtttggtttggcttttgcaaagccagaatcaattctg 308915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 45276501 - 45276403
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||| ||||| ||||| ||||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  45276501 tgttttgtttgacttttaaaaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 45276403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 8416662 - 8416760
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  8416662 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 8416760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 36821725 - 36821653
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 221  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| |  || ||| ||||||||| |||||    
T  36821725 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattatccttaaagttacaattccaagctt 36821653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 3590107 - 3590169
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||| ||||||| ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  3590107 ctccaaaaacaattctggttgaagctacaattcctaacttttgagttaactagaatcaattct 3590169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 31012608 - 31012404
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012608 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31012509  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012508 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31012409  T
Q  271 tctgc 275  Q
     ||||    
T  31012408 cctgc 31012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 71 - 269
Target Start/End: Complemental strand, 25341650 - 25341452
Alignment:
Q  71 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341650 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 25341551  T
Q  171 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341550 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 25341452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 257
Target Start/End: Original strand, 41064585 - 41064717
Alignment:
Q  126 aagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttctt 224  Q
    |||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||||||||| |||||||   | |||||||||||||||||||||     
T  41064585 aagcaattctacaacattctaatatgtttggtttgccttttcataattgcttctatcctccaaaaacaattctccataaagctacaattcctagcttctg 41064684  T
Q  225 actttcctagaatcaattctacaccctcaattc 257  Q
    ||||| |||||||||||||||||||||||||||    
T  41064685 acttttctagaatcaattctacaccctcaattc 41064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35422355 - 35422288
Alignment:
Q  1 atgataaatactaactttggactaaccgattgatgactatagtatttgtgaatcctttcccttgaaac 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35422355 atgataaatactaactttggactaaccgattgatgactatagtatttgtgaatcctttcccttgaaac 35422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 25970433 - 25970531
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| |||| ||||||||||||| ||||||  || ||||||||||||||||||| |  ||||| ||||||||||||||||    
T  25970433 tgtttggtttggcttttaagaattgcttctatcctccaaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctaca 25970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 39857075 - 39857172
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| | |||||||||||||| |||||| | | ||  ||||||||||||||    
T  39857075 catgtttggtttgacttttcagaattgcttctatcctccaaaagtaattctggatgaagctacaattcatagcttttgagttaactagaatcaattct 39857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 37371078 - 37371177
Alignment:
Q  148 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  37371078 atgtttggtttggcttttaagaattggttctatcctccaaaagcaattatctttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 37371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 14999868 - 14999966
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| | || ||||||||||||| ||||||  || |||||||||||||||  || |  ||||||||||||||||||||||    
T  14999868 tgtttggtttggctttttagaattgattctatcctccaaaagtaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctaca 14999966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 30825190 - 30825288
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| |||| |||||||||||| |||||||  || ||| ||||||||||||||| |  |||||| |||||||||||||||    
T  30825190 tgtttggtttgcctttttagaattgcttctatcctccaaaaacaattctccttaaagttacaattcctagcttttggctttccaagaatcaattctaca 30825288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 26826384 - 26826480
Alignment:
Q  151 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||| | |||  ||| ||||||||||||| ||||||  || ||| ||||||||||| ||| || |||||||| |||||||||||||    
T  26826384 tttggtttggcttttaagaattacttctatcctccaaaagtaattctccttaaaggtacaattcctaactttttcctttcctataatcaattctaca 26826480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 25472863 - 25472765
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  |||||||||||| || ||||||||   ||| |||||||||||||||||    
T  25472863 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccttgaagctacaaatcatagcttctacattttctagaatcaattctaca 25472765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 12909229 - 12909327
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  12909229 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 12909327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 43664912 - 43664814
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||| ||| |||||||| |||   || |||||||||||||||||| |  || ||||||||||| ||| | | | |||||||||||||||||||||||    
T  43664912 tgtttgttttagcttttcagaattcattctatcctccaaaagcaatttttcttaaagctacaatttctaacctttgactttcctagaatcaattctaca 43664814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 19544572 - 19544634
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    ||||||||| |||| | |||||||||||||||| |||||| | | ||| ||||||||||||||    
T  19544572 ctccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattct 19544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 275
Target Start/End: Complemental strand, 29542646 - 29542443
Alignment:
Q  72 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542646 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 29542547  T
Q  172 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29542546 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 29542447  T
Q  272 ctgc 275  Q
    ||||    
T  29542446 ctgc 29542443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 275
Target Start/End: Original strand, 42663354 - 42663560
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42663354 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaa 42663453  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663454 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 42663553  T
Q  269 tctctgc 275  Q
    || ||||    
T  42663554 tccctgc 42663560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 66 - 275
Target Start/End: Complemental strand, 3261049 - 3260840
Alignment:
Q  66 aactaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 165  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3261049 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgactttt 3260950  T
Q  166 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260949 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 3260850  T
Q  266 ccatctctgc 275  Q
    ||||| ||||    
T  3260849 ccatccctgc 3260840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 69 - 275
Target Start/End: Original strand, 33114954 - 33115160
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33114954 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 33115053  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115054 aatagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 33115153  T
Q  269 tctctgc 275  Q
    || ||||    
T  33115154 tccctgc 33115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 14082814 - 14083017
Alignment:
Q  72 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  14082814 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctacaatatttaacatgtttggtttgactttttaaaat 14082913  T
Q  172 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14082914 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 14083013  T
Q  272 ctgc 275  Q
    ||||    
T  14083014 ctgc 14083017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 2526282 - 2526379
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  2526282 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 2526379  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 53765 - 53693
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 221  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||| | |||||||||||||||||||||||    
T  53765 tgtttggtttgccttttcataattgcttctatcctccaaaagcaattatggttgaagctacaattcctagctt 53693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 27739449 - 27739351
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  27739449 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccgtgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 27739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 8958599 - 8958502
Alignment:
Q  151 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 248  Q
    ||||||||| ||||||| ||| | || ||||||| |||| |||||||  || |||||||||||||||  || |  |||||||||||||||||||||||    
T  8958599 tttggtttgacttttcagaattgtttctatcctctaaaaacaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacac 8958502  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 37066657 - 37066560
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 246  Q
    ||||||||||||||||| | ||| | || ||||||| |||||||||| |  || ||||||||| ||||| |||||  |||| ||||||||||||||||    
T  37066657 tgtttggtttggcttttaagaattggttatatcctctaaaagcaattatcattaaagctacaaatcctaacttctagcttttctagaatcaattctac 37066560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 41040234 - 41040137
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 246  Q
    ||||||||||||||||| | ||| |||| ||||||||||||  |||| |  |||||||||||| ||||||||| |  |||| | ||||||||||||||    
T  41040234 tgtttggtttggcttttaagaattgcttctatcctccaaaaataattatccttgaagctacaaatcctagcttttggcttttcaagaatcaattctac 41040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 7073373 - 7073275
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| ||||| |||| |||   ||||||| |||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  7073373 tgtttggtttggcttttaaaaattgcttctatttcccaaaagtaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 7073275  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 21022730 - 21022632
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| | || |||||||| ||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21022730 tgtttggtttggcttttaagaattgattctatcctcctaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21022632  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 33229204 - 33229302
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  33229204 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 33229302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 39236994 - 39236896
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |   ||||||||||| ||||| ||| | |||||  ||||||||||||||||    
T  39236994 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatccatgaagctacaaatcctaacttttgacttttgtagaatcaattctaca 39236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 40979452 - 40979491
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagctt 221  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  40979452 ctccaaaagcaattctggatgaagctacaattcctagctt 40979491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 10900165 - 10900227
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 10900227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 19356501 - 19356599
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||||||||| | | | | || ||||||| |||||||||| |  || || |||||| |||| |||||| | ||| |||||||||||||||||    
T  19356501 tgtttggtttggcttttaagagttgattctatcctctaaaagcaattatccttaaaactacaaatccttgcttctaatttttctagaatcaattctaca 19356599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 19375471 - 19375409
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  19375471 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 19375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 69 - 270
Target Start/End: Original strand, 30018771 - 30018972
Alignment:
Q  69 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018771 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 30018870  T
Q  169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018871 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctatcttcttactttcctagaatcaattctacaccctcaattctattaattcca 30018970  T
Q  269 tc 270  Q
    ||    
T  30018971 tc 30018972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 31746359 - 31746179
Alignment:
Q  75 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 173  Q
    |||||||||||||||||||| | |   |||| |||||||  | | |||||||||||||||| ||| |||  || |||||||||||| ||||||||||| |    
T  31746359 tctgtttggtttggcttttgtaca---agaagcaattctacaacttttcaaaagcaattctacaacattccaatatgtttggtttgacttttcaaaattg 31746263  T
Q  174 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 257  Q
    ||| ||||||||||||||||||||   |  |||||||||||||| ||| |  |||| ||||||||||||||||| |||||||||    
T  31746262 cttctatcctccaaaagcaattctccatatagctacaattcctaacttatggcttttctagaatcaattctacatcctcaattc 31746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 4146810 - 4146907
Alignment:
Q  147 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  4146810 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 4146907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 21517455 - 21517357
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21517455 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21517357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 30134180 - 30134219
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagctt 221  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  30134180 ctccaaaagcaattctggttgaagctacaatttctagctt 30134219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 365591 - 365689
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || ||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  365591 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaagctacaaatcctaacttctaacttttctagactcaattttaca 365689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 20838560 - 20838498
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||||| ||||||||||||| ||||| ||| | | ||| ||| ||||||||||    
T  20838560 ctccaaaagcaattctggttgaagctacaaatcctaacttttgagtttactataatcaattct 20838498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 27825057 - 27825119
Alignment:
Q  182 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 244  Q
    |||||||||||||| | ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  27825057 ctccaaaagcaattatggttgaagctacaattcctaacttttcagttaactagaatcaattct 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 16815 - 16883
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 217  Q
    ||||||||||||||||| | ||| | || ||||||||||||||||||||| || |||||||||||||||    
T  16815 tgtttggtttggctttttagaattgattctatcctccaaaagcaattctaattaaagctacaattccta 16883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 91535 - 91634
Alignment:
Q  150 gtttggtttggcttttcaaaatagcttttatcctccaaaagca--attctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    |||||||||||||||| | ||| | || |||||||||||||||  |||||| || ||||||||||||||| ||| |  ||||| |||||  |||||||||    
T  91535 gtttggtttggctttttagaattgattctatcctccaaaagcaatattctacttaaagctacaattcctaacttttggctttcatagaacaaattctaca 91634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 4090 - 4188
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 247  Q
    ||||| ||||||||||| | ||| | || ||||||| |||||||||| |  || |||||| || |||||||||||  |||| ||| |||||||||||||    
T  4090 tgtttagtttggcttttaagaattgattctatcctcgaaaagcaattatcattaaagctaaaaatcctagcttctagcttttctaaaatcaattctaca 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 37697 - 37791
Alignment:
Q  149 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 245  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |  ||||||||  |||| |||||||||||||||    
T  37697 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatcctttaagctacaaat--tagcttctagcttttctagaatcaattcta 37791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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