View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_high_1 (Length: 606)
Name: NF0548_high_1
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 30 - 533
Target Start/End: Complemental strand, 7340545 - 7340048
Alignment:
| Q |
30 |
tagataactttatgataattaacaaaatattcatcagatatcagcatcataattcataatagtgatatgaagtgaattgaagacttagactacaacaggt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7340545 |
tagataactttatgataattaacaaaatattcatcagatatcagcatcataattcataatagtgatatgaagtgaattgaagactgagactacaacaggt |
7340446 |
T |
|
| Q |
130 |
tcacaattacaaacagattttcatttttaaaactaaaggggtgacaaggagnnnnnnnnnnttgaattttcacaaaggaatcttagaaacttggtaatta |
229 |
Q |
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| T |
7340445 |
tcacaattacaaacagattttcatttttaaaactaaaggggtgacaaggagaaaaaaaaa-ttgaattttcacaaaggaatcttagaaacttggtaatta |
7340347 |
T |
|
| Q |
230 |
cagtgtctttgctggaaatagtatggataggagatcgtgaagtctgtatgtccatatataagttgtggaaaatatatttactaatgggagtagtaatcac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340346 |
cagtgtctttgctggaaatagtatggataggagatcgtgaagtctgtatgtccatatataagttgtggaaaatatatttactaatgggagtagtaatcac |
7340247 |
T |
|
| Q |
330 |
acctcttgagattgcactggtattaaaatacaggcattatttgctgaaatttggtgaaaattctatttatgctggttaagttaagatacaccgtgaatta |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
7340246 |
acctcttgagattgcactggtattaaaatacaggcattatttgctgaaatttggtgaaaattctgtttatgctggt-----taagatacaccgtgaatta |
7340152 |
T |
|
| Q |
430 |
agatacatcatacatccaattttaaaaccatcgcgaagagaatggaagaaacacttgagaatcttagaaagtatttggagtttaaagagatgacttctgt |
529 |
Q |
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| T |
7340151 |
agatacatcatacatccaattttaaaaccatcgcgaagagaatggaagaaacacttgagaatcttagaaagtatttggagtttaaagagatgacttctgt |
7340052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 1548199 - 1548094
Alignment:
| Q |
75 |
atcataattcataatagtgatatgaagtgaattgaagacttagactacaacaggttcacaattacaaacagattttcatttttaaaactaaaggggtgac |
174 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||| | || ||| ||||||||||| ||||||||| ||||||||||||||||| ||||| ||| |
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| T |
1548199 |
atcataaatcataatagtgatatgaagtgaattgtagattaaggttacgacaggttcacatttacaaacatcttttcatttttaaaacttaagggttgag |
1548100 |
T |
|
| Q |
175 |
aaggag |
180 |
Q |
| |
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|||||| |
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|
| T |
1548099 |
aaggag |
1548094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 370
Target Start/End: Complemental strand, 1548053 - 1547948
Alignment:
| Q |
257 |
taggagatcgtgaagtctgtatgtccatatataagttgtggaaaatatatttactaatgggagtagtaatcacacctcttgagattgcactggtattaaa |
356 |
Q |
| |
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||||||||| |||||| | ||||||||||||||||||||| |||| || |||||||| ||||| ||| |||| | ||||||||||||||||| |
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| T |
1548053 |
taggagatcatgaagtttatatgtccatatataagttgtgaaaaacatgtttactaaagggagaagtggtcac--------aaattgcactggtattaaa |
1547962 |
T |
|
| Q |
357 |
atacaggcattatt |
370 |
Q |
| |
|
||||| |||||||| |
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|
| T |
1547961 |
atacaagcattatt |
1547948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 23083868 - 23083815
Alignment:
| Q |
33 |
ataactttatgataattaacaaaatattcatcagatatcagcatcataattcat |
86 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||| ||||| |||||||| |
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| T |
23083868 |
ataacttgctgataattgacaaaatattcatcagatatcggcatcttaattcat |
23083815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 28910573 - 28910617
Alignment:
| Q |
42 |
tgataattaacaaaatattcatcagatatcagcatcataattcat |
86 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
28910573 |
tgataattaacaaaatattcatcgaatatcagcttcataattcat |
28910617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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