View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_high_10 (Length: 341)
Name: NF0548_high_10
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 74 - 309
Target Start/End: Complemental strand, 325398 - 325163
Alignment:
| Q |
74 |
attaatcaatatttctatgtatttaactgaatcttgaatatttctcctcatttcaaatttatagaccttctctcttaaacatgttcacattctgaaaccc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
325398 |
attaatcaatatttctatgtatttaactgaatcttgaatatttctcctcatttcaaatttatagacgctctctcttaaacatgttcacattctgaaaccc |
325299 |
T |
|
| Q |
174 |
tttctttctcctttttgattcttttgacggtaataacccttttactcctactaatggatattcacagaataaacaaggcttgtgcagcctgcaaatatca |
273 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
325298 |
tttctttctcctttttgattcttttgacagtaataacccttttactcctactaatggatattcacagaataaacaaggcttgtgcagcctgcaaatatca |
325199 |
T |
|
| Q |
274 |
aagaagaaagtgtactccagattgccctttagctcc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
325198 |
aagaagaaagtgtactccagattgccctttagctcc |
325163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 3080865 - 3080824
Alignment:
| Q |
244 |
aaacaaggcttgtgcagcctgcaaatatcaaagaagaaagtg |
285 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
3080865 |
aaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtg |
3080824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 45654491 - 45654562
Alignment:
| Q |
13 |
aatatgatagagaaaaaaggagcaaatagaaaggaatggaatctattcctttttccaatcaattaatcaata |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45654491 |
aatatgatagagaaaaaaggagcaaatagaaaggaatggaatctattcctttttccaatcaattaaacaata |
45654562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 36914995 - 36915037
Alignment:
| Q |
244 |
aaacaaggcttgtgcagcctgcaaatatcaaagaagaaagtgt |
286 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
36914995 |
aaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtgt |
36915037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 41121945 - 41122001
Alignment:
| Q |
253 |
ttgtgcagcctgcaaatatcaaagaagaaagtgtactccagattgccctttagctcc |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
41121945 |
ttgtgcagcatgcaaatatcaaagaagaaagtgttctccaagttgcgatttagctcc |
41122001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1316 times since January 2019
Visitors: 3667