View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_high_12 (Length: 326)

Name: NF0548_high_12
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_high_12
NF0548_high_12
[»] chr3 (33 HSPs)
chr3 (1-277)||(6140099-6140375)
chr3 (1-277)||(6257015-6257291)
chr3 (1-277)||(6263495-6263771)
chr3 (3-277)||(6243130-6243404)
chr3 (1-281)||(6166706-6166986)
chr3 (1-277)||(13275344-13275620)
chr3 (3-277)||(6914914-6915188)
chr3 (10-277)||(6897901-6898168)
chr3 (12-277)||(6593304-6593569)
chr3 (1-277)||(6724019-6724295)
chr3 (68-277)||(6235860-6236069)
chr3 (3-277)||(6880329-6880603)
chr3 (9-242)||(7747850-7748083)
chr3 (77-252)||(6941777-6941952)
chr3 (64-165)||(6481986-6482087)
chr3 (79-252)||(8469401-8469574)
chr3 (77-252)||(7585712-7585887)
chr3 (80-250)||(4390932-4391102)
chr3 (71-252)||(8570959-8571140)
chr3 (36-244)||(5278511-5278719)
chr3 (77-244)||(5261784-5261951)
chr3 (130-252)||(6450864-6450986)
chr3 (71-252)||(6782339-6782520)
chr3 (71-176)||(6945185-6945290)
chr3 (204-252)||(6730866-6730914)
chr3 (84-252)||(8587764-8587932)
chr3 (77-252)||(6523499-6523674)
chr3 (77-176)||(6841584-6841683)
chr3 (217-250)||(5265922-5265955)
chr3 (64-172)||(5296663-5296771)
chr3 (127-250)||(8452487-8452610)
chr3 (217-250)||(5248017-5248050)
chr3 (207-251)||(6482129-6482173)
[»] scaffold0425 (2 HSPs)
scaffold0425 (48-135)||(13521-13608)
scaffold0425 (190-277)||(13621-13708)
[»] chr7 (1 HSPs)
chr7 (207-252)||(6575469-6575514)
[»] scaffold1643 (1 HSPs)
scaffold1643 (77-176)||(87-186)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6140375 - 6140099
Alignment:
Q  1 cgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaact 100  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6140375 cgttttttgggaggcagttgccttgcaacctaggcagcctccggatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttcaaact 6140276  T
Q  101 caaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  6140275 caaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagaggagagtctgctgccatcaactattaactctcttgagttg 6140176  T
Q  201 acaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6140175 acaaattgttcaaacctaaaaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattga 6140099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6257291 - 6257015
Alignment:
Q  1 cgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaact 100  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6257291 cgttttttgggaggcagttgccttgcaacctaggcagcctccggatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaact 6257192  T
Q  101 caaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttg 200  Q
    |||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  6257191 caaatctctgaaacaattcactcttagtgacgattttgaaatcttcgaatcctttccagaggagagtatgctgccatcaactattaactctcttgagttg 6257092  T
Q  201 acaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6257091 acaaattgttcaaacctaacaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattga 6257015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6263771 - 6263495
Alignment:
Q  1 cgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaact 100  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  6263771 cgttttttgagaggcagttgccttccaacctaagcagcctccgaatagaaagatgccgtaatttgatggctacaatagaggagtggggtttgttccaact 6263672  T
Q  101 caaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  6263671 caaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattaactcttttgagttg 6263572  T
Q  201 acaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||  ||||| ||||||||||    
T  6263571 acaaattgtcccaacctaagaaaaataaactgcaagggtcttctccacctcacttcactcaaatctctatatattga 6263495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 6243404 - 6243130
Alignment:
Q  3 ttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactca 102  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6243404 tttttcgggaggcagttgccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactca 6243305  T
Q  103 aatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgac 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||     
T  6243304 aatctctgaaacaattcagtcttagtgatgattttgaaatcttcgagtcctttccagaggagagtatgctgccatcaagtattaactctcttgatttgaa 6243205  T
Q  203 aaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  6243204 aaattgttcctgcctaaaaaaaataaactgcaagggtcttctccacctcacttcacttgaatctctatatattga 6243130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 6166986 - 6166706
Alignment:
Q  1 cgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaact 100  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6166986 cgttttttgggaggcagttgccttgcaacctaggcagcctccggatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttcaaact 6166887  T
Q  101 caaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttg 200  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| | || ||| ||| |||||| ||||||||||||||||||||||||||||||||||    
T  6166886 caaatctctgaaacaattaagtcttagtgatgattttgaaatcttcgcattcttgccaaaggagactatgctgccatcaagtattacctctcttgagttg 6166787  T
Q  201 acaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattgatgat 281  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  6166786 acaaattgttccaacctaagaaaaataaactacaacggtcttttccacctcacttcacttgaatctctatatattgatgat 6166706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 13275344 - 13275620
Alignment:
Q  1 cgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaact 100  Q
    ||||||||  ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  13275344 cgtttttttagaggcagttgccttccaacctaagcagcctccgaatagaaagatgccgtaatttgatggctacaatagaggagtggggtttgttcaaact 13275443  T
Q  101 caaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttg 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  13275444 caaatctctgaaacaattcagtcttagtgatgattttgaaatctttgagtcctttccagaagagagtatgctgccatcaactattaactctcttgagttg 13275543  T
Q  201 acaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13275544 acaaattgttcaaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattga 13275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 6915188 - 6914914
Alignment:
Q  3 ttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactca 102  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||| |||||| | ||||||||||||||||||||||||||    
T  6915188 ttttttgggaggcagttgccttccaacctaggcagcctccgaatagaaagatgtccaaacttgacggcttctagagaggagtggggtttgttccaactca 6915089  T
Q  103 aatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgac 202  Q
    | ||||| |||||||| ||| |||||||||||||  | |||||||| |||||||||||||||||| |||||||||||| |||||  ||||| ||||||||    
T  6915088 attctctaaaacaattatgtgttagtgatgatttgaatatcttggagtcctttccagaggagagtctgctgccatcaactattaaatctctcgagttgac 6914989  T
Q  203 aaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  6914988 aaattgttccaacctaaaaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattga 6914914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 6898168 - 6897901
Alignment:
Q  10 ggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctct 109  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| |||||    
T  6898168 ggaggcagttgccttgcaacctatgcagcctccgaatagaaagatgtcctaaattgatggcttcgagagaggagtggggtttgttccaactcaattctct 6898069  T
Q  110 gaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgt 209  Q
    |||||| ||| || | ||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||| ||| |  ||||||||||| |||||||||    
T  6898068 gaaacagttcagtgtaagtgatgattttgaaatcttggagtcctttccggagaagagtctgctgccatcaactatgaaatctcttgagttaacaaattgt 6897969  T
Q  210 tccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  6897968 tccaacctaagaataataaactataagggtcttctccacctcacttcacttgaatctctatatattga 6897901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 6593304 - 6593569
Alignment:
Q  12 aggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctctga 111  Q
    |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||||||| | ||||||||||||||||||||||||| | |||||||    
T  6593304 aggcagttgccttccaacctatgcagcctccgaatagaaagatgtcctaaattaatggcttcgagagaggagtggggtttgttccaactcgattctctga 6593403  T
Q  112 aacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttc 211  Q
    |||||||| || |||||||||||||| |||||||||| |||||||| ||||||||| |||| ||||||| |||||  ||  ||||||| |||||||||||    
T  6593404 aacaattcagtgttagtgatgattttcaaatcttggagtcctttccggaggagagtctgcttccatcaactattaaatcctttgagttaacaaattgttc 6593503  T
Q  212 caacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6593504 caacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgtattga 6593569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 6724019 - 6724295
Alignment:
Q  1 cgttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaact 100  Q
    ||||||| || |||||||||||||||| |||| |||||||||||||||||||||| ||||| || |||||||| | ||||||||||||||||||||||||    
T  6724019 cgtttttcggcaggcagttaccttccagcctatgcagcctccgaatagaaagatgtcctaaattaatggcttcgagagaggagtggggtttgttccaact 6724118  T
Q  101 caaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttg 200  Q
    | | ||||||||||||||| || |||||||||||||| ||||||| || |||||||| ||||||||| |||| ||||||| |||||  ||  |||||||     
T  6724119 cgattctctgaaacaattcagtgttagtgatgattttcaaatcttagagtcctttccggaggagagtctgcttccatcaactattaaatcctttgagtta 6724218  T
Q  201 acaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6724219 acaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgtattga 6724295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 68 - 277
Target Start/End: Complemental strand, 6236069 - 6235860
Alignment:
Q  68 ggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagt 167  Q
    |||||| | ||||||||||||||||||||||||||||||| | ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||    
T  6236069 ggcttcgagagaggagtggggtttgttccaactcaaatctttaaaacaattgagtgttagtgatgattttgaaatcttggaatcctttccagaggagagt 6235970  T
Q  168 atgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctt 267  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||     
T  6235969 atgctgccatcaactattaactctcttgagttgacaaattgttccaacctaagaaaaatcaactacaagggtcttctccacctcacttcacttgaatctc 6235870  T
Q  268 tatatattga 277  Q
    ||||||||||    
T  6235869 tatatattga 6235860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 6880603 - 6880329
Alignment:
Q  3 ttttttgggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactca 102  Q
    |||| |||||||||||| |||||||||||| | ||||||| |||| ||| ||| ||||| ||||||||||| | ||||||||||||||||||||||||||    
T  6880603 ttttctgggaggcagttgccttccaacctatgtagcctccaaataaaaaaatgtcctaagttgatggcttcgagagaggagtggggtttgttccaactca 6880504  T
Q  103 aatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgac 202  Q
    | ||||||||||||||| || || |||||||||| ||||||||||| |||||||| ||||||||| |||||||||||| ||| |  ||||||||||| ||    
T  6880503 attctctgaaacaattcagtgttggtgatgatttggaaatcttggagtcctttccggaggagagtctgctgccatcaactatgaaatctcttgagttaac 6880404  T
Q  203 aaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||| ||||||    
T  6880403 aaattgttccaacctaagaataataaactacaagggtcttctccacatgacctcacttgaatctctatgtattga 6880329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 7748083 - 7747850
Alignment:
Q  9 gggaggcagttaccttccaacctaggcagcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctc 108  Q
    ||||||||| | || ||||| ||| ||||||||||| |||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  7748083 gggaggcagctgccctccaatctatgcagcctccgagtagaaagatgtcctaaattgatggcttcgagagaggagtggggtttgttccaactcaaatctc 7747984  T
Q  109 tgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattg 208  Q
    | |||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||| ||||||||||| | ||||||    
T  7747983 taaaacaattatgtgttagtgatgattttgaaatcttggagtcctttccggaggagagtctgctgccatcaactattacatctcttgagttaaaaaattg 7747884  T
Q  209 ttccaacctaagaataataaactacaagggtctt 242  Q
    |||||||||||||| |||||||||||||||||||    
T  7747883 ttccaacctaagaagaataaactacaagggtctt 7747850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 6941952 - 6941777
Alignment:
Q  77 agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca 176  Q
    ||||||||||||||||||||||||||  ||  ||  | |||||| | |||||||||| |||||||   |||| ||||| |||||||||| | ||||||||    
T  6941952 agaggagtggggtttgttccaactcagttccttgttagaattctctgttagtgatgagtttgaaaatgtggagtccttcccagaggagaatctgctgcca 6941853  T
Q  177 tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
     ||||| ||||   |||| | |||| ||||||||| || ||||||||||| ||| | |||||| ||||||||||||    
T  6941852 ccaagtcttactgatcttaatttgagaaattgttcaaagctaagaataatgaacaaaaagggttttctccacctca 6941777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 6481986 - 6482087
Alignment:
Q  64 tgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagga 163  Q
    |||| ||||||| ||| ||||||||||||||||||||||| ||||||||| | ||  |  |||||||||| ||||||| | |||||||||||||||||||    
T  6481986 tgattgcttcaagagaagagtggggtttgttccaactcaattctctgaaagagtttagagttagtgatgagtttgaaaacgtggaatcctttccagagga 6482085  T
Q  164 ga 165  Q
    ||    
T  6482086 ga 6482087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 252
Target Start/End: Complemental strand, 8469574 - 8469401
Alignment:
Q  79 aggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatc 178  Q
    |||||||||||||||||  |||||| ||  |||||  ||||| | |||| ||||| ||||||| | | || ||||| |||||||||||| |||||||| |    
T  8469574 aggagtggggtttgttcagactcaattccttgaaatcattctttgttagcgatgagtttgaaaacgtagagtccttcccagaggagagtctgctgccacc 8469475  T
Q  179 aagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
    || | |||| | |||| | ||||  |||||||| || ||||||||||| ||| |||||||| ||||||||||||    
T  8469474 aactcttacgtatcttaatttgaataattgttcaaagctaagaataatgaacaacaagggttttctccacctca 8469401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 7585887 - 7585712
Alignment:
Q  77 agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca 176  Q
    |||| |||||||||||||||||||||| ||||||| |   ||| || |||||||||| ||||||| | |||| || || |||||||||| | ||||||||    
T  7585887 agagcagtggggtttgttccaactcaattctctgagagctttcggtgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca 7585788  T
Q  177 tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
     ||| ||||  || |||   |||  | |||||||| || ||||||||||| ||| | |||||| ||||||||||||    
T  7585787 ccaactattcactttctctggttctctaattgttcaaagctaagaataatgaacaaaaagggttttctccacctca 7585712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 250
Target Start/End: Original strand, 4390932 - 4391102
Alignment:
Q  80 ggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatca 179  Q
    |||||||||||||||||||||||| ||||| ||| | |||  | || ||||||| |||||||   |||| ||||| |||||||||||| |||| |||       
T  4390932 ggagtggggtttgttccaactcaattctctaaaagatttcattgttggtgatgactttgaaaatgtggagtccttcccagaggagagtctgctaccagat 4391031  T
Q  180 agtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacct 250  Q
    | ||||  |||||||   |||| | | ||||| ||  ||||||||||||||| ||||||||||||||||||    
T  4391032 aatattgactctcttagcttgagagaatgttcaaagttaagaataataaactgcaagggtcttctccacct 4391102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 252
Target Start/End: Original strand, 8570959 - 8571140
Alignment:
Q  71 ttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatg 170  Q
    ||||| |||||| ||||||||||||||||| || |||||||||  |||  |  ||  |||||| ||| |||   |||||||||| |||||||||||| ||    
T  8570959 ttcaagagaggattggggtttgttccaacttaactctctgaaatcatttagagttgttgatgactttaaaaatgtggaatccttcccagaggagagtttg 8571058  T
Q  171 ctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
    |||||| ||| | ||  | |||||   |||   |||||||| || ||||||||||| ||||||||||| |||||||||||||    
T  8571059 ctgccaccaactcttcacactctttgtttgtataattgttcaaagctaagaataatgaactacaagggacttctccacctca 8571140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 5278719 - 5278511
Alignment:
Q  36 agcctccgaatagaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgatt 135  Q
    |||||||||||| | | ||||||| |  |||| || |||| | ||||||||||||||||| |||| || ||||||||| | ||| |  |||||||||| |    
T  5278719 agcctccgaataaacaaatgccctgaactgattgcatcaagaaaggagtggggtttgttcgaactaaattctctgaaagagttcagagttagtgatgact 5278620  T
Q  136 ttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaa 235  Q
    |||||| | |||| ||||| || ||||||| | | |||||  ||| | ||| | || || | |||  ||||||||| || ||||||||||| |||| |||    
T  5278619 ttgaaagcatggactccttcccggaggagaatctactgcccccaactcttaacactattcatttggaaaattgttcaaagctaagaataatcaactccaa 5278520  T
Q  236 gggtcttct 244  Q
    |||||||||    
T  5278519 gggtcttct 5278511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 5261951 - 5261784
Alignment:
Q  77 agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca 176  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||    ||||||| || ||||| |   |||| || || || ||||||| | | ||||||    
T  5261951 agaggagtggggtttgttcgaactcaattctctgaaagaattcaaagttagtgacgactttgagaatgtggagtctttcccggaggagaatctactgcca 5261852  T
Q  177 tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttct 244  Q
     ||| | |||  ||||||   |||  ||||||||| || |||||||||||||||||||||||||||||    
T  5261851 ccaactcttaagtctcttcgtttggaaaattgttcaaagctaagaataataaactacaagggtcttct 5261784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 6450864 - 6450986
Alignment:
Q  130 atgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaa 229  Q
    |||| ||||||| | |||| ||||| || ||||||| | |||||||| ||| | || || | ||| | ||||  |||||||| |||||||||||||| ||    
T  6450864 atgactttgaaaacgtggagtccttccccgaggagaatctgctgccaccaactcttcccacccttcaattgaataattgttcaaacctaagaataatgaa 6450963  T
Q  230 ctacaagggtcttctccacctca 252  Q
    |||||||||| ||||||||||||    
T  6450964 ctacaagggttttctccacctca 6450986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 252
Target Start/End: Original strand, 6782339 - 6782520
Alignment:
Q  71 ttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatg 170  Q
    ||||| ||||||||||||||||||||||||||| ||  |||||   |||| | ||| |||||| ||||||| | |||| ||||| |||||||||| | |     
T  6782339 ttcaagagaggagtggggtttgttccaactcaattccttgaaatctttctttgttactgatgagtttgaaaacgtggagtccttcccagaggagaatcta 6782438  T
Q  171 ctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
    || |||||||   ||    ||||| |  ||  ||||||||| || ||||||||||| ||| |||||||| ||||||||||||    
T  6782439 ctaccatcaacccttgagactctttatgtggaaaattgttcaaagctaagaataatgaacaacaagggttttctccacctca 6782520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 6945290 - 6945185
Alignment:
Q  71 ttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatg 170  Q
    ||||| ||||||||||||||||||||||||||| ||||| |   |||||  | |||||||||| ||||||| | |||| || || |||||||||| | ||    
T  6945290 ttcaagagaggagtggggtttgttccaactcaattctctcattgaattcgttgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctg 6945191  T
Q  171 ctgcca 176  Q
    ||||||    
T  6945190 ctgcca 6945185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 6730866 - 6730914
Alignment:
Q  204 aattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  6730866 aattgttcaaacctaagaataatgaactacaagggttttctccacctca 6730914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 8587932 - 8587764
Alignment:
Q  84 tggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagta 183  Q
    |||||||||||||||||||| ||||| |||   |||    |||||||||| ||||||| | |||| ||||| |||||||||| | | |||||| ||| |     
T  8587932 tggggtttgttccaactcaattctctaaaatctttcaaagttagtgatgagtttgaaaacgtggagtccttcccagaggagaatcttctgccaccaactc 8587833  T
Q  184 ttacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
    ||   ||| ||  ||||   |||||||| || |||||||||||||||| ||| ||||||||||||||||    
T  8587832 ttgagtctatttggttgtttaattgttcaaagctaagaataataaactgcaaaggtcttctccacctca 8587764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 252
Target Start/End: Original strand, 6523499 - 6523674
Alignment:
Q  77 agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca 176  Q
    |||||||||||| |||||||||||||| ||  ||| | | |||| | |||||||||| ||||||| | |||| || || |||||||||| | ||||||||    
T  6523499 agaggagtgggggttgttccaactcaattccttgagatatttctttgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca 6523598  T
Q  177 tcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
     ||| | |   | ||||||| ||     ||||||| || ||||||||||| ||| |||||||| ||||||||||||    
T  6523599 ccaactctggacactcttgatttatatgattgttcaaagctaagaataatgaacaacaagggttttctccacctca 6523674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 6841584 - 6841683
Alignment:
Q  77 agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca 176  Q
    ||||||||||||||||||||||||||| ||  |||||   ||| || |||||||||| ||||||| | |||| || || |||||||||| | ||||||||    
T  6841584 agaggagtggggtttgttccaactcaattccttgaaatggttcagtgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca 6841683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 5265955 - 5265922
Alignment:
Q  217 taagaataataaactacaagggtcttctccacct 250  Q
    ||||||||||||||||||||||||||||||||||    
T  5265955 taagaataataaactacaagggtcttctccacct 5265922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 5296771 - 5296663
Alignment:
Q  64 tgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagagga 163  Q
    |||| ||||| | |||| ||||||| |||||||||||||| ||||||||| |||||  | |||| ||||| ||||||| | |||| || || || |||||    
T  5296771 tgatagcttcgagagagaagtgggggttgttccaactcaattctctgaaagaattcattgttagcgatgactttgaaaacatggagtcattcccggagga 5296672  T
Q  164 gagtatgct 172  Q
    |||| ||||    
T  5296671 gagtttgct 5296663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 250
Target Start/End: Complemental strand, 8452610 - 8452487
Alignment:
Q  127 gtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataat 226  Q
    ||||||||||||||| | |||| ||||||||| |||||||| |||||||| ||| | || | | |||| | ||||  || ||||| || || ||||||||    
T  8452610 gtgatgattttgaaaacgtggagtcctttccaaaggagagtctgctgccaccaactctttcgtatcttaatttgaataactgttcaaagctcagaataat 8452511  T
Q  227 aaactacaagggtcttctccacct 250  Q
     ||| || ||||| ||||||||||    
T  8452510 gaacaacgagggttttctccacct 8452487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 5248050 - 5248017
Alignment:
Q  217 taagaataataaactacaagggtcttctccacct 250  Q
    ||||||||||||||| ||||||||||||||||||    
T  5248050 taagaataataaacttcaagggtcttctccacct 5248017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 6482129 - 6482173
Alignment:
Q  207 tgttccaacctaagaataataaactacaagggtcttctccacctc 251  Q
    ||||| || ||||||||||| |||||||||||| |||||||||||    
T  6482129 tgttcaaagctaagaataatgaactacaagggttttctccacctc 6482173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 13521 - 13608
Alignment:
Q  48 gaaagatgccctaatttgatggcttcaatagaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgatt 135  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||    
T  13521 gaaagatgtcctaaattgatggcttcaagagaggagtggggtttgttccaactcaattctctgaaacaattcagtgttagtgatgatt 13608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 190 - 277
Target Start/End: Original strand, 13621 - 13708
Alignment:
Q  190 ctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 277  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||    
T  13621 ctcttgagttgaaaaattgttccaatctaggaataataaactacaagggtcttctctacctcactttgcttgaatctctatatattga 13708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 6575469 - 6575514
Alignment:
Q  207 tgttccaacctaagaataataaactacaagggtcttctccacctca 252  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||    
T  6575469 tgttcaaagctaagaataatgaactacaagggtcttctccacctca 6575514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 186 - 87
Alignment:
Q  77 agaggagtggggtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgcca 176  Q
    |||||||||| |||||||||||||||| |||||| | |||||     |||||||||| ||||||| | |||| || || |||||||||| | ||||||||    
T  186 agaggagtggagtttgttccaactcaattctctgtatcaatttgaagttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgcca 87  T

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