View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_high_14 (Length: 296)
Name: NF0548_high_14
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 49019325 - 49019224
Alignment:
| Q |
74 |
tcaccaatcaccaaaacagaggaaattcattattcaattcaacaaataattctgacccacatnnnnnnnttcccacaaataatcaaacagacacttcaga |
173 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
49019325 |
tcaccaatcaccaaaacagaagaaatccattattcaattcaacaaataattctgacccacataaaaaaattcccacagataatcaaacagacacttcaga |
49019226 |
T |
|
| Q |
174 |
at |
175 |
Q |
| |
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|| |
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| T |
49019225 |
at |
49019224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 8345471 - 8345368
Alignment:
| Q |
74 |
tcaccaatcaccaaaacagaggaaattcattattcaattcaacaaataattctgacccacatnnnnnnnttcccacaaataatcaaacagacacttcaga |
173 |
Q |
| |
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||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| | |
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| T |
8345471 |
tcaccaatcactaaaacagaagaaacccattattcaattcaacaaataattctgacccgcataaaaaaatttccacaaataatcaaacagacacttcaaa |
8345372 |
T |
|
| Q |
174 |
atca |
177 |
Q |
| |
|
|||| |
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|
| T |
8345371 |
atca |
8345368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 42824143 - 42824246
Alignment:
| Q |
74 |
tcaccaatcaccaaaacagaggaaattcattattcaattcaacaaataattctgacccacatnnnnnnnttcccacaaataatcaaacagacacttcaga |
173 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| | |
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| T |
42824143 |
tcaccaatcactaaaacagaagaaacccattattcaattcaacaaataattctgacccgcataaaaaaatttccacaaataatcaaacagacacttcaaa |
42824242 |
T |
|
| Q |
174 |
atca |
177 |
Q |
| |
|
|||| |
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|
| T |
42824243 |
atca |
42824246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 8345291 - 8345256
Alignment:
| Q |
254 |
tccaacccagatataaaatttaaacttcagaaaaat |
289 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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|
| T |
8345291 |
tccaaaccagatataaaatttaaacttcagaaaaat |
8345256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 42824323 - 42824358
Alignment:
| Q |
254 |
tccaacccagatataaaatttaaacttcagaaaaat |
289 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |
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|
| T |
42824323 |
tccaaaccagatataaaatttaaacttcagaaaaat |
42824358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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