View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_high_19 (Length: 251)
Name: NF0548_high_19
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 45654401 - 45654168
Alignment:
| Q |
9 |
attcgaatgaatttagattaaagggatacatttccatgcaaggttcagtctcttttatgcttaactattgaattaggttggatgtttgatttgctaagca |
108 |
Q |
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| T |
45654401 |
attcgaatgaatttagattaaagggatacatttccatgcaaggttcagtctcttttatgcttaactattgaattaggttggatgtttgatttgctaagca |
45654302 |
T |
|
| Q |
109 |
attggtgagtattacggtcttaaagttaaacccaagtaatcagtaattcaatgtcaagttaattttattcaatttaaagcaatgtctaacctggtgaata |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
45654301 |
attggtgagtattacggtcttaaagttaaacccaagtaatcagtaattcaatgtcaagttaattttattcaatttaaagcaatgtctaacctggtcacta |
45654202 |
T |
|
| Q |
209 |
ttagcctgacaatcaaagtcacaaccacctatgc |
242 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
45654201 |
ttagcttgacaatcaaagtcacaaccacctatgc |
45654168 |
T |
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