View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_high_22 (Length: 251)
Name: NF0548_high_22
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 47292468 - 47292305
Alignment:
| Q |
1 |
tgagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgagg |
100 |
Q |
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| T |
47292468 |
tgagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgagg |
47292369 |
T |
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| Q |
101 |
cagagatgatacctcaccatggtgctcaggtatctggccgctcaaatcaatttgcaagacgctg |
164 |
Q |
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| T |
47292368 |
cagagatgatacctcaccatggtgctcagatatctggccgctcaaatcaatttgcaagacgctg |
47292305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 47291991 - 47291918
Alignment:
| Q |
172 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcatctcac |
245 |
Q |
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| T |
47291991 |
gtgcagtatcagtcgattagggcttggaaaggaaaagaatagtgtatgagcgttagcttagggtttcttctcac |
47291918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 56209733 - 56209838
Alignment:
| Q |
2 |
gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggc |
101 |
Q |
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| T |
56209733 |
gagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatattatcgcaaaattgaggc |
56209832 |
T |
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| Q |
102 |
agagat |
107 |
Q |
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|||||| |
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| T |
56209833 |
agagat |
56209838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 45883425 - 45883518
Alignment:
| Q |
2 |
gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaatt |
95 |
Q |
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| T |
45883425 |
gagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgaggatcataagctgctttcaacaaattatcgcaaatt |
45883518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 45863480 - 45863579
Alignment:
| Q |
5 |
tttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcaga |
104 |
Q |
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| T |
45863480 |
tttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgaggatcataagctgctttcaacaaattatctcaaatttggggcaga |
45863579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 47288472 - 47288417
Alignment:
| Q |
180 |
tcagtcgattagggctt-ggaaaggaaaagaatagtgtatgagcgttagcttaggg |
234 |
Q |
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| T |
47288472 |
tcagtcgattagggctttggaaaggaaaagaatagtgcatgagcgtgagcttaggg |
47288417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 7973642 - 7973742
Alignment:
| Q |
2 |
gagtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggc |
101 |
Q |
| |
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||||||||| |||| ||| |||||| |||||||| || | |||| |||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||| |
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| T |
7973642 |
gagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaattctcgcaaatttgaggc |
7973741 |
T |
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| Q |
102 |
a |
102 |
Q |
| |
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| |
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| T |
7973742 |
a |
7973742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 10520321 - 10520217
Alignment:
| Q |
3 |
agtttagcccaaccgcaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggca |
102 |
Q |
| |
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|||||||||||||| ||| ||||| | | ||||||||| | || || ||||||| | |||||||||| |||||||| |||||| |||||||| |||| | |
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| T |
10520321 |
agtttagcccaaccccaacttaaatggtcgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgcaaatttgaggaa |
10520222 |
T |
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| Q |
103 |
gagat |
107 |
Q |
| |
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||||| |
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| T |
10520221 |
gagat |
10520217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 35803584 - 35803647
Alignment:
| Q |
51 |
gaaatacgatgatcatatgcggctttcaacaaattatcgcaaattcgaggcagagatgatacct |
114 |
Q |
| |
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||||||||| ||||||| ||||||||||| |||| |||||||||| |||||||||| |||||| |
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| T |
35803584 |
gaaatacgaggatcataagcggctttcaagaaataatcgcaaatttcaggcagagataatacct |
35803647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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