View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_high_23 (Length: 251)
Name: NF0548_high_23
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 6290402 - 6290167
Alignment:
| Q |
12 |
aattctaaaataacaactttgcattggcaaattgaagcatgaaattaacatgctttattataagcttattatcgatcgattgacacatattgatacatca |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6290402 |
aattataaaataacaactttgcattggcaaattgaagcatgaaattaacatgctttattataagcttattatcgat----tgacacatattgatacatca |
6290307 |
T |
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| Q |
112 |
gtcttctttgaaatgtctttcaatggatccgagaagagttgaattgatataatcttggggaccatgagcaggtaatcctggaattagtaaaccaaccatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6290306 |
gtcttctttgaaatgtctttcaatggatccgagaagagttgaattgatataatcttggggaccatgagcaggtaatcctggaattagtaaaccaaccatc |
6290207 |
T |
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| Q |
212 |
ctaaagaagaagagaaaccatccttctctatagtgaggtc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6290206 |
ctaaagaagaagagaaaccatccttctctatagtgaggtc |
6290167 |
T |
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