View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_high_29 (Length: 224)
Name: NF0548_high_29
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 45654625 - 45654483
Alignment:
| Q |
82 |
aaaaagaatcacattaaatgtttgtgttaatagaaagaaatgagatgaaatcataaaagtttctattgtttaattgattggaaaaaggaatagattccat |
181 |
Q |
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| T |
45654625 |
aaaaagaatcacattaaatgtttgtgttaatagaaagaaatgagatgaaatcataaaagtttctattgtttaattgattggaaaaaggaatagattccat |
45654526 |
T |
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| Q |
182 |
tcctttctatttgctccttttttctctatcatattgttggaga |
224 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45654525 |
tcctttctatttgctccttttttctctatcatatttttggaga |
45654483 |
T |
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