View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_high_6 (Length: 431)
Name: NF0548_high_6
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 97 - 400
Target Start/End: Complemental strand, 10443211 - 10442905
Alignment:
| Q |
97 |
aacaatctattttaacaatctctttactagatttccattttctgtcccatataagtgcaggattaatagtaacaatatccttatctcttaaagcaccatc |
196 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10443211 |
aacaaactattttaacaatctctttactagatttccattttctgtcccatataagtgcaggattaatagtaacaatatccttgtctcttaaagcaccatc |
10443112 |
T |
|
| Q |
197 |
cacatccagcaagatcttcaatccnnnnnnnn---catataaattacaaatggacgaaaactatgtaaggttgagtgttcctgataaatattcttaaaat |
293 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10443111 |
cacatccagcaagatcttaaatccaaaaaaaaaaacatataaattacaaatggacgaaaactatgtaaggttgagtgttcctgataaatattcttaaaat |
10443012 |
T |
|
| Q |
294 |
tccacctagtattaagaaacacataatatacaacaatttgcatgcaattttggtttcagaaacaggcaaagaagaagccattgttattgatatcatgaac |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10443011 |
tccacctagtattaagaaacacataatatacaacaatttgcatgcaattctggtttcagaaacaggcaaagaagaagccattgttattgatatcatgaac |
10442912 |
T |
|
| Q |
394 |
tccaata |
400 |
Q |
| |
|
||||||| |
|
|
| T |
10442911 |
tccaata |
10442905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 10443368 - 10443293
Alignment:
| Q |
11 |
cacagacaaaactcatgcaattggtatggttgagcatatttgttgttaacctgtgagcagagaacaatgataaagt |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
10443368 |
cacagacaaaactcatgcaattggtatggttgagcatatttgttgttaacctgtgagcagaggacaaggataaagt |
10443293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1295 times since January 2019
Visitors: 3667