View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_low_1 (Length: 750)
Name: NF0548_low_1
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 619; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 98 - 736
Target Start/End: Complemental strand, 8974654 - 8974016
Alignment:
| Q |
98 |
ctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974654 |
ctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattga |
8974555 |
T |
|
| Q |
198 |
acttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaa |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974554 |
acttgttgaagactttacgtgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaa |
8974455 |
T |
|
| Q |
298 |
aacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgctatcttgaaagaaattttttct |
397 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8974454 |
aacatttgggcaactttcagaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgttatcttgaaagaaattttttct |
8974355 |
T |
|
| Q |
398 |
attgaactggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataatgatatatggaagctggaaccctaaaagttgtg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8974354 |
attgaactggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataatgatgtatggaagctggaaccctaaaagttgtg |
8974255 |
T |
|
| Q |
498 |
atagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttc |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8974254 |
atagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaaaaagagttccattcttgtcttc |
8974155 |
T |
|
| Q |
598 |
acagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctaga |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974154 |
acagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctaga |
8974055 |
T |
|
| Q |
698 |
taaaaagataagccagagagtgagactccattaccaagt |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974054 |
taaaaagataagccagagagtgagactccattaccaagt |
8974016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 98 - 736
Target Start/End: Complemental strand, 8963258 - 8962620
Alignment:
| Q |
98 |
ctaatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattga |
197 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
8963258 |
ctaatagctgtcgggctccaatcagcatgtgctcctttcaaaagtgctcctacaccggcaacatgaggacatgacatagatgttccagttaaaaaattga |
8963159 |
T |
|
| Q |
198 |
acttgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaa |
297 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
8963158 |
acttgttgacgactttatgagacccaaaatccaacacaggaacatttggaggccatgcagctaagattgacgtaccgggagctgtaatgtcaggtttcaa |
8963059 |
T |
|
| Q |
298 |
aacatttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgctatcttgaaagaaattttttct |
397 |
Q |
| |
|
|||| ||| ||||| | ||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
8963058 |
cacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggtttagcaccaaaagatgtaatcttgaaagacattttttct |
8962959 |
T |
|
| Q |
398 |
attgaactggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataatgatatatggaagctggaaccctaaaagttgtg |
497 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||||||||| ||||||||||| | |||||||||||||| |||||||| || ||| ||| || || |
|
|
| T |
8962958 |
attgaactagagttaaagttactatgtatgtaatctttgaccatttctccatttttctggttaataatgatggatggaagcaggtaccgtaagtcttctg |
8962859 |
T |
|
| Q |
498 |
atagattattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttc |
597 |
Q |
| |
|
|||||| || ||||| ||||||||||||| || ||||||||||||| | || ||| || |||| ||| ||||| | |||| || ||||||||||||| |
|
|
| T |
8962858 |
atagatcatcttgtgttgtgtttgatataaaaatagctcctacaacttctgctttaaccacattataaatttgattagaaagactttcattcttgtcttc |
8962759 |
T |
|
| Q |
598 |
acagacaacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctaga |
697 |
Q |
| |
|
||| || ||||||| || |||||| ||||||||| ||||| |||||||||| |||| |||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
8962758 |
acaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttcctata |
8962659 |
T |
|
| Q |
698 |
taaaaagataagccagagagtgagactccattaccaagt |
736 |
Q |
| |
|
|| |||| ||||| | |||||||||||||||||||||| |
|
|
| T |
8962658 |
taggaagagaagccggtgagtgagactccattaccaagt |
8962620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 101 - 403
Target Start/End: Original strand, 8945829 - 8946128
Alignment:
| Q |
101 |
atagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaact |
200 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| ||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
8945829 |
atagctgcagggctccaatcaacacgcgctccttttaaaagtgctcctacaccggcaacatgaggacatgacgtagatgttccagttaaaaatttgaact |
8945928 |
T |
|
| Q |
201 |
tgttgaagactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaaaac |
300 |
Q |
| |
|
|||||||||||| | | || ||||||||||||| ||||| |||||||||||||||||||||||| ||||| | ||||||||||||||||| || |
|
|
| T |
8945929 |
tgttgaagactt---cggtcacaggatccaacacaggaagttttgtgggccatgcagctaagattgatgtatcaggagccgtaatgtcaggtttcaagac |
8946025 |
T |
|
| Q |
301 |
atttgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgctatcttgaaagaaattttttctatt |
400 |
Q |
| |
|
|| ||| ||||| | ||| || ||||| |||||| || | | || | ||| |||||||||| |||||| || || ||||||||| || ||| ||||| |
|
|
| T |
8946026 |
atatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataacttgaaagacatatttgctatt |
8946125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 107 - 337
Target Start/End: Complemental strand, 8958235 - 8958005
Alignment:
| Q |
107 |
gcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttga |
206 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||| | ||||| |||||||||||| ||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
8958235 |
gcagggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatgttccacttatcacattgaacttgttga |
8958136 |
T |
|
| Q |
207 |
agactttacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaaaacatttgg |
306 |
Q |
| |
|
||| ||| | ||| || ||| |||||||| |||||| ||||||||||||||||| |||||||||| | || |||||||||||||||| || ||| |
|
|
| T |
8958135 |
agatcttatgagtccccaaacccatcacaggaacatttgtgggccatgcagctaagatatttgtaccaggagcagtgatgtcaggtttcaaaatatatgg |
8958036 |
T |
|
| Q |
307 |
gcaactttctgaaggacctcttgaactataa |
337 |
Q |
| |
|
||||| | |||||| ||||||||||||||| |
|
|
| T |
8958035 |
acaactatttgaaggccctcttgaactataa |
8958005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 617 - 736
Target Start/End: Original strand, 8946351 - 8946470
Alignment:
| Q |
617 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
716 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||| |||||||||||||||||| | ||| ||||||||||| |||||||||||| ||| | || | || |
|
|
| T |
8946351 |
ttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
8946450 |
T |
|
| Q |
717 |
gtgagactccattaccaagt |
736 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8946451 |
gtgagactccattaccaagt |
8946470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 9948300 - 9948363
Alignment:
| Q |
101 |
atagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgagg |
165 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9948300 |
atagctgcaggg-tccaatcagcatgtgctcctttcaaaagtgctccaacaccagcaacatgagg |
9948363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 113 - 387
Target Start/End: Original strand, 19375715 - 19375989
Alignment:
| Q |
113 |
ctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaagactt |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||| ||| ||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19375715 |
ctccaatcaacatgtgctcctttcaaaagtaatgctatacctgcaacgtgaggacatgccatagatgttccacttatcaaattgaacttgttgaagactt |
19375814 |
T |
|
| Q |
213 |
tacttgacccaaactccaacacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaact |
312 |
Q |
| |
|
|| | ||| || ||||||||| ||| |||||| ||||||||||||||||||||||||||| || | || ||||| |||||||| ||| ||| ||| | |
|
|
| T |
19375815 |
taaaagtccccaaatccaacacatgaacatttgttggccatgcagctaagattgatgtaccaagagcagtgatgtcgggtttcaacacaaatggacaatt |
19375914 |
T |
|
| Q |
313 |
ttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgctatcttgaaaga |
387 |
Q |
| |
|
| |||||| |||||||||||||||| ||| || ||||| | ||||||| |||||||| || | |||||||||| |
|
|
| T |
19375915 |
atttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgttttcttgaaaga |
19375989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 132 - 418
Target Start/End: Original strand, 21687023 - 21687306
Alignment:
| Q |
132 |
ctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaa |
231 |
Q |
| |
|
|||| ||||| ||| ||||||| |||||||| ||| ||||||||||||||||| || |||||||| ||||| ||||||| | | |||||| | | |
|
|
| T |
21687023 |
cttttaaaagcgctgctacacctgcaacatgtggacatgacatagatgttccatctatcaaattgaagttgttaaagacttcagt---cccaaaattgga |
21687119 |
T |
|
| Q |
232 |
cacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaa |
331 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||| | || |||||||||||||| |||| ||| ||||| | ||| || || ||||| |
|
|
| T |
21687120 |
cacaggaacgtttgtgggccatgcagctaagattgatgtaccaggagcagtgatgtcaggtttcaacacatatggacaactatttgatggtccccttgag |
21687219 |
T |
|
| Q |
332 |
ctataaaaatccacgctaggagctggtttagcaccaaaagatgctatcttgaaagaaattttttctattgaactggagttagagtta |
418 |
Q |
| |
|
|||||||||||||| ||||| | || |||| |||| |||| || | |||||||||| || ||| |||||||||| | |||||||||| |
|
|
| T |
21687220 |
ctataaaaatccacactaggtgttgatttaacaccgaaagctgttttcttgaaagacatgtttgctattgaactagcgttagagtta |
21687306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 518 - 736
Target Start/End: Original strand, 21687400 - 21687618
Alignment:
| Q |
518 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttt |
617 |
Q |
| |
|
|||||||||| |||| |||| |||||| || || || || |||| | | ||| ||| |||||||| |||| ||| ||||||| || |||||||| || | |
|
|
| T |
21687400 |
tttgatataaaaacacctccaacaacttttgctttatacacattaaacatttgttcatgaagagtttcattattgccttcacaaaccacaatctttctct |
21687499 |
T |
|
| Q |
618 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
717 |
Q |
| |
|
||||| || ||| || | ||| |||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| || |||| ||| |
|
|
| T |
21687500 |
tcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttcctagatagaaagacaaaccagtgag |
21687599 |
T |
|
| Q |
718 |
tgagactccattaccaagt |
736 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21687600 |
tgagactccattaccaagt |
21687618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 132 - 362
Target Start/End: Original strand, 34962640 - 34962870
Alignment:
| Q |
132 |
ctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaagactttacttgacccaaactccaa |
231 |
Q |
| |
|
|||||||||| || | ||||| ||||||||||| | | ||||||||||||||||| |||||||| ||| |||| | |||| ||| |||| |||| |
|
|
| T |
34962640 |
ctttcaaaagcgccgcgacacctgcaacatgagggcacgccatagatgttccacttatcaaattgaatttgctgaaaattttatgagactcaaattccat |
34962739 |
T |
|
| Q |
232 |
cacaggaatatttgtaggccatgcagctaagattgatgtaccaggacctgtaatgtcaggtttcaaaacatttgggcaactttctgaaggacctcttgaa |
331 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| || |||||||| | ||||||||||||||||| ||| ||| ||||| | ||| || ||||||||| |
|
|
| T |
34962740 |
cacaggaacatttgtaggccatgccgctaagatcgaagtaccaggcgcagtaatgtcaggtttcaacacaaatggacaactatatgatggccctcttgaa |
34962839 |
T |
|
| Q |
332 |
ctataaaaatccacgctaggagctggtttag |
362 |
Q |
| |
|
||||| |||| || ||||| |||||||||| |
|
|
| T |
34962840 |
ctatatgaatcaacactaggtgctggtttag |
34962870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 49008369 - 49008292
Alignment:
| Q |
132 |
ctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaacttgttgaaga |
209 |
Q |
| |
|
|||| ||||||||| ||||||| ||||| || ||| ||||||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
49008369 |
cttttaaaagtgctgctacacctgcaacgtgtggacatgacattgatgttccacttaacaagttgaagttgttgaaga |
49008292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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