View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_12 (Length: 415)

Name: NF0548_low_12
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_12
NF0548_low_12
[»] chr3 (6 HSPs)
chr3 (17-404)||(13490683-13491070)
chr3 (205-409)||(13485717-13485910)
chr3 (110-192)||(7118800-7118882)
chr3 (99-191)||(476064-476156)
chr3 (110-191)||(480987-481068)
chr3 (111-184)||(7125963-7126036)
[»] chr2 (1 HSPs)
chr2 (101-175)||(43875203-43875277)
[»] scaffold0438 (1 HSPs)
scaffold0438 (122-175)||(5365-5418)
[»] chr5 (1 HSPs)
chr5 (110-175)||(33958061-33958126)
[»] chr6 (2 HSPs)
chr6 (110-154)||(7140734-7140778)
chr6 (110-154)||(8680348-8680392)


Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 13491070 - 13490683
Alignment:
Q  17 agtgaatgccaagagaataataaagtcagccttagtaattttccagattgcattttactttatatactgtcgtttttgtcgaccaaagaagttgttcaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13491070 agtgaatgccaagagaataataaagtcagccttagtaattttccagattgcattttactttatatactgtcgtttttgtcgaccaaagaagttgttcaaa 13490971  T
Q  117 ctttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttcatactttaatactggaaagggtttcacagaatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13490970 ctttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttcatactttaatactggaaagggtttcacagaatt 13490871  T
Q  217 tgtgtctaaggttatgtctcttcgtgatgcctcaacctcactgcacaatctagagtttcgctgccatgacattgtggaccctttcctactcacaagtatt 316  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13490870 cgtgtctaaggttatgtctcttcgtgatgcctcaacctcactgcacaatctagagtttcgctgccatgacattgtggaccctttcctactcacaagtatt 13490771  T
Q  317 ttggaatacgctgtttcacacaatgtccgtagattaaaaatccttactaggtgtgatattcaacgctttccgacttgcttattttcat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13490770 ttggaatacgctgtttcacacaatgtccgtagattaaaaatccttactaggtgtgatattcaacgctttccgacttgcttattttcat 13490683  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 205 - 409
Target Start/End: Complemental strand, 13485910 - 13485717
Alignment:
Q  205 tttcacagaatttgtgtctaaggttatgtctcttcgtgatgcctcaacctcactgcacaatctagagtttcgctgccatgacattgtggaccctttccta 304  Q
    |||||||||||| ||||||||| |  ||||||||||||||| |||||||||||||||||| |||| |||| |||||||||| ||||||||||||| ||||    
T  13485910 tttcacagaattcgtgtctaagttcctgtctcttcgtgatgactcaacctcactgcacaacctagtgtttggctgccatgaaattgtggacccttgccta 13485811  T
Q  305 ctcacaagtattttggaatacgctgtttcacacaatgtccgtagattaaaaatccttactaggtgtgatattcaacgctttccgacttgcttattttcat 404  Q
    |||||||| |||||| |||||||||||||||||||||        |||| |||||||||||| ||   |||||| |||||||||||||||||||||||||    
T  13485810 ctcacaagaattttgcaatacgctgtttcacacaatg--------ttaagaatccttactagatg---tattcatcgctttccgacttgcttattttcat 13485722  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 7118800 - 7118882
Alignment:
Q  110 gttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttcatactttaa 192  Q
    ||||||||||  ||| | |||||||||||||| ||| |||||||| ||||||||||||||||| ||| | ||||| |||||||    
T  7118800 gttcaaacttctattctctccaaaagatggaaaaatctatggaagcatcttcccacccttacactaacttcttcacactttaa 7118882  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 476064 - 476156
Alignment:
Q  99 ccaaagaagttgttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttcatacttta 191  Q
    |||||||||  ||||||||||  |||||||||||||||||||  ||| | ||||| | |||||||||||||||| ||| | ||||| ||||||    
T  476064 ccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatctctggaatactcttcccacccttacactaagttcttcaaacttta 476156  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 480987 - 481068
Alignment:
Q  110 gttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttcatacttta 191  Q
    ||||||||||  |||||||||||||||||||  ||| | ||||||| ||||||||| ||||| |||| | ||||| ||||||    
T  480987 gttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacgcttaccttaagttcttcaaacttta 481068  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 7125963 - 7126036
Alignment:
Q  111 ttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttca 184  Q
    |||||||||  || || |||||||||||||||||| | |||||   |||||| ||||||||||||||| |||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttca 7126036  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 43875277 - 43875203
Alignment:
Q  101 aaagaagttgttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacatta 175  Q
    ||||| || ||||||||||  ||||| |||||||||||||  ||| | ||||||| ||||||||| |||||||||    
T  43875277 aaagaggtcgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcccactcttacatta 43875203  T

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Target: scaffold0438 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 5365 - 5418
Alignment:
Q  122 attttatccaaaagatggaagaatgtatggaagaatcttcccacccttacatta 175  Q
    |||||||||||||||||||  ||| | ||||||| ||||||||| |||||||||    
T  5365 attttatccaaaagatggatcaatctctggaagactcttcccactcttacatta 5418  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 33958126 - 33958061
Alignment:
Q  110 gttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacatta 175  Q
    ||||||||||  |||||||||||||||||||  ||| | ||||||| ||||| ||| |||||||||    
T  33958126 gttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttacatta 33958061  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 7140778 - 7140734
Alignment:
Q  110 gttcaaactttaattttatccaaaagatggaagaatgtatggaag 154  Q
    ||||||||||  ||||| |||||||||||||||||| ||||||||    
T  7140778 gttcaaacttgtattttgtccaaaagatggaagaatatatggaag 7140734  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 8680392 - 8680348
Alignment:
Q  110 gttcaaactttaattttatccaaaagatggaagaatgtatggaag 154  Q
    ||||||||||  ||||| |||||||||||||||||| ||||||||    
T  8680392 gttcaaacttgtattttgtccaaaagatggaagaatatatggaag 8680348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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