View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_15 (Length: 399)

Name: NF0548_low_15
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_15
NF0548_low_15
[»] scaffold0455 (1 HSPs)
scaffold0455 (30-385)||(11381-11736)
[»] chr6 (11 HSPs)
chr6 (30-385)||(28133345-28133700)
chr6 (34-381)||(28116429-28116776)
chr6 (38-384)||(28176547-28176895)
chr6 (45-384)||(28219320-28219662)
chr6 (164-384)||(28220218-28220435)
chr6 (110-311)||(28177484-28177685)
chr6 (184-251)||(32279617-32279684)
chr6 (33-91)||(28220457-28220515)
chr6 (349-384)||(28177447-28177482)
chr6 (184-251)||(29729667-29729734)
chr6 (193-249)||(32799459-32799515)
[»] scaffold0038 (3 HSPs)
scaffold0038 (45-384)||(19818-20160)
scaffold0038 (164-384)||(20716-20933)
scaffold0038 (33-91)||(20955-21013)
[»] chr5 (5 HSPs)
chr5 (184-251)||(14001123-14001190)
chr5 (184-251)||(18282269-18282336)
chr5 (184-251)||(29686227-29686294)
chr5 (171-249)||(14000849-14000927)
chr5 (183-251)||(23085343-23085411)
[»] chr2 (9 HSPs)
chr2 (171-251)||(23914563-23914643)
chr2 (181-250)||(744910-744979)
chr2 (184-251)||(11694216-11694283)
chr2 (184-249)||(35468724-35468789)
chr2 (183-251)||(12599519-12599587)
chr2 (184-251)||(11681642-11681709)
chr2 (182-248)||(6786728-6786794)
chr2 (181-254)||(13277929-13278001)
chr2 (214-251)||(28189230-28189267)
[»] chr7 (9 HSPs)
chr7 (181-250)||(43358746-43358815)
chr7 (184-251)||(3434021-3434087)
chr7 (171-249)||(7192301-7192382)
chr7 (198-248)||(7606262-7606312)
chr7 (193-249)||(10039634-10039690)
chr7 (171-249)||(5468068-5468146)
chr7 (183-251)||(28069673-28069742)
chr7 (171-251)||(24649959-24650039)
chr7 (215-251)||(38237486-38237522)
[»] chr4 (7 HSPs)
chr4 (171-251)||(10214327-10214407)
chr4 (184-249)||(24670087-24670152)
chr4 (188-251)||(48458044-48458107)
chr4 (171-248)||(47044843-47044920)
chr4 (192-248)||(7456642-7456698)
chr4 (215-251)||(21038538-21038574)
chr4 (171-251)||(46250891-46250971)
[»] chr3 (4 HSPs)
chr3 (183-251)||(50585738-50585806)
chr3 (200-250)||(28247325-28247375)
chr3 (184-251)||(2594478-2594545)
chr3 (191-251)||(36643588-36643648)
[»] chr8 (7 HSPs)
chr8 (184-251)||(1284155-1284222)
chr8 (181-251)||(3501394-3501464)
chr8 (181-251)||(11420422-11420492)
chr8 (171-249)||(34151099-34151177)
chr8 (186-251)||(4438535-4438600)
chr8 (193-250)||(36067954-36068011)
chr8 (199-251)||(2442259-2442311)
[»] chr1 (7 HSPs)
chr1 (184-251)||(8659205-8659272)
chr1 (181-249)||(6295051-6295119)
chr1 (184-251)||(12294446-12294512)
chr1 (183-249)||(10427483-10427548)
chr1 (214-251)||(26542695-26542732)
chr1 (193-250)||(51229291-51229348)
chr1 (197-249)||(36564079-36564131)
[»] scaffold0009 (1 HSPs)
scaffold0009 (215-251)||(53728-53764)


Alignment Details
Target: scaffold0455 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 11736 - 11381
Alignment:
30 gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11736 gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa 11637  T
130 gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11636 gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga 11537  T
230 taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
11536 taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatactaaatgattcatagtcacaacaataatatgtcgtaaaa 11437  T
330 taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11436 taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc 11381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 28133700 - 28133345
Alignment:
30 gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28133700 gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa 28133601  T
130 gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28133600 gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga 28133501  T
230 taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
28133500 taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatactaaatgattcatagtcacaacaataatatgtcgtaaaa 28133401  T
330 taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28133400 taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc 28133345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 34 - 381
Target Start/End: Original strand, 28116429 - 28116776
Alignment:
34 ctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagaga 133  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
28116429 ctaattggaataaaaaatatggagaaagaatatatttaagtatattctttaataaagaattgtatcaatgatctatacttctatactatttacgaagaga 28116528  T
134 atgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaa 233  Q
    ||||||||| ||||| ||| ||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
28116529 atgcatagtattaagctgattttttcgcttccaattatatacgcgtaaattaatttgactataagaatgttatttagtttatgtcactgcaaaagataaa 28116628  T
234 aatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaatacc 333  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||    
28116629 aatttatattatatttgtcattgcaaaagatgcttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcgtaaattacc 28116728  T
334 aattgcaaaaactgcagatatgtggcattcatatattggtcaaaattt 381  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||    
28116729 aattgcaaaaactttaaatatgtggcattcatatattggtcaaaattt 28116776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 38 - 384
Target Start/End: Original strand, 28176547 - 28176895
Alignment:
38 gtggaataaaaaatatggagaaaaa-atatatttaagtttattctttaataaa-gaattgtatcagtaatctatacttctatactatttacaaagagaat 135  Q
    ||||||||||||| ||||| ||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
28176547 gtggaataaaaaacatggaaaaaaatatatatttaagtctactctttaataaaagaattgtatcagtaatctatacttctatactatttacaaagagaat 28176646  T
136 gcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaa 235  Q
    | ||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||    
28176647 gtatagttttaagctgactttttcgctttcaattatatacccgtaaataaatttgactataagaatgttatttagttgatgtcactgcaaaaaataagaa 28176746  T
236 tttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaa 335  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||    
28176747 tttatattatatttgtcattgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaa 28176846  T
336 ttgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgcc 384  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||    
28176847 ttgcaaaaactgtagatatgtggcattcatatattggtcaaaagttgcc 28176895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 384
Target Start/End: Original strand, 28219320 - 28219662
Alignment:
45 aaaaaatatggagaaaa-aatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagagaatgcatagtt 143  Q
    ||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
28219320 aaaaaatatagagaaaaaaatatatttaagtcaattctttaataaagaattgtatcactaatctatacttatatactatttacaaagagaatgcatagtt 28219419  T
144 ttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatatt 243  Q
    ||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
28219420 ttaagctgagattttcgcttccaattatatacccgttaataaatttgactataagaatgttatttagtt--tgtcattgcaaaagataagaatttatatt 28219517  T
244 atatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaa 343  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||     
28219518 atatttgtctttgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaattgcaaag 28219617  T
344 actgcagatatg--tg--gcattcatatattggtcaaaatttgcc 384  Q
    | || |||||||  ||   |||||||||||||||||||| |||||    
28219618 aatgtagatatgcatgcaacattcatatattggtcaaaagttgcc 28219662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 164 - 384
Target Start/End: Complemental strand, 28220435 - 28220218
Alignment:
164 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
28220435 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatatttttcattgcaaaaga 28220336  T
264 tagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattc 363  Q
    || |||||||||||||||||||||||||   ||||||||||||||||||| |||||  |||||||| |||| ||||||||||||  ||||||||||||||    
28220335 tacttccttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattc 28220239  T
364 atatattggtcaaaatttgcc 384  Q
    |||||||||||||||| ||||    
28220238 atatattggtcaaaatgtgcc 28220218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 110 - 311
Target Start/End: Complemental strand, 28177685 - 28177484
Alignment:
110 acttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttattta 209  Q
    |||||||||||||||| ||||||||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||    
28177685 acttctatactatttataaagagaatacattgttttaagctgactttttggcttccaattatatacccgttaatatatttgattataagaatgttattta 28177586  T
210 gtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcac 309  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
28177585 gtttatgtcattgcaaaagataataatttatattatatttttcattgaaaaagatacttccttattaagtaatttataatattaaatgattcatagtcac 28177486  T
310 aa 311  Q
    ||    
28177485 aa 28177484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 32279684 - 32279617
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| |||| |||||||||| |||  |||||||  ||||||||| ||||||||||||||||||    
32279684 aaatttgaccataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattatatttgt 32279617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 28220515 - 28220457
Alignment:
33 cctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaaga 91  Q
    ||||||||||| | | ||||||||||||||||||||||||||  ||||||| |||||||    
28220515 cctaagtggaaaatacaatatggagaaaaaatatatttaagtcaattctttcataaaga 28220457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 28177482 - 28177447
Alignment:
349 agatatgtggcattcatatattggtcaaaatttgcc 384  Q
    ||||||||||||||||||||||||||||||| ||||    
28177482 agatatgtggcattcatatattggtcaaaatgtgcc 28177447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 29729734 - 29729667
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||||||||| |  ||||||| ||| || |||||  ||||||||| ||||||||||||||||||    
29729734 aaatttgactataaaatagttattttgttgatttcattaaaaaagataagaatttatattatatttgt 29729667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 32799515 - 32799459
Alignment:
193 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    |||||||||||||| | ||| ||| ||||  ||||||||||||| ||||||||||||    
32799515 tataagaatgttatattgttgatgacattcaaaaagataaaaatctatattatattt 32799459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 384
Target Start/End: Original strand, 19818 - 20160
Alignment:
45 aaaaaatatggagaaaa-aatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagagaatgcatagtt 143  Q
    ||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
19818 aaaaaatatagagaaaaaaatatatttaagtcaattctttaataaagaattgtatcactaatctatacttatatactatttacaaagagaatgcatagtt 19917  T
144 ttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatatt 243  Q
    ||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
19918 ttaagctgagattttcgcttccaattatatacccgttaataaatttgactataagaatgttatttagtt--tgtcattgcaaaagataagaatttatatt 20015  T
244 atatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaa 343  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||     
20016 atatttgtctttgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaattgcaaag 20115  T
344 actgcagatatg--tg--gcattcatatattggtcaaaatttgcc 384  Q
    | || |||||||  ||   |||||||||||||||||||| |||||    
20116 aatgtagatatgcatgcaacattcatatattggtcaaaagttgcc 20160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 164 - 384
Target Start/End: Complemental strand, 20933 - 20716
Alignment:
164 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
20933 caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatatttttcattgcaaaaga 20834  T
264 tagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattc 363  Q
    || |||||||||||||||||||||||||   ||||||||||||||||||| |||||  |||||||| |||| ||||||||||||  ||||||||||||||    
20833 tacttccttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattc 20737  T
364 atatattggtcaaaatttgcc 384  Q
    |||||||||||||||| ||||    
20736 atatattggtcaaaatgtgcc 20716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 21013 - 20955
Alignment:
33 cctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaaga 91  Q
    ||||||||||| | | ||||||||||||||||||||||||||  ||||||| |||||||    
21013 cctaagtggaaaatacaatatggagaaaaaatatatttaagtcaattctttcataaaga 20955  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 14001190 - 14001123
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| ||||||||||||||| ||| ||||||||  ||||||||| ||||||||||||||||||    
14001190 aaatttgacaataagaatgttattttgttgatgtcattcaaaaagataagaatttatattatatttgt 14001123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 18282336 - 18282269
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||||||||||||| |||||| |||  |||||||  ||||||||||||||| |||| |||||||    
18282336 aaatttgactataagaatattattttgttggtgtcattcaaaaagataaaaatttgtattctatttgt 18282269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 29686294 - 29686227
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||| ||||||||||||||| ||  ||  |||||||  ||||||||| ||||||||||||||||||    
29686294 aaattttactataagaatgttaatttattggtgtcattcaaaaagataagaatttatattatatttgt 29686227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 14000927 - 14000849
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    ||||||| | || |||||||||||||  ||||  |||| |||  |||||||  ||||||||||||||||||||||||||    
14000927 tatacccttaaacaaatttgactatagaaatgcaattttgttggtgtcattaaaaaagataaaaatttatattatattt 14000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 23085411 - 23085343
Alignment:
183 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| || ||||||||||||| |||  ||||| |  |||| |||| ||||||||||||||||||    
23085411 taaatttgattaaaagaatgttattttgttggtgtcagttaaaaaaataagaatttatattatatttgt 23085343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 23914563 - 23914643
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||| | || ||||||| ||||||||||||||| | |||| ||| |||| ||||||||| ||||||||||||||||||    
23914563 tatacccttaaacaaatttggctataagaatgttatattgtttgtgttattgaaaaagataagaatttatattatatttgt 23914643  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 744979 - 744910
Alignment:
181 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 250  Q
    |||||||||| ||||||||||||||| | |||  ||| |||  |||||||||||||||||||||||||||    
744979 aataaatttgtctataagaatgttatattgttggtgttatttaaaaagataaaaatttatattatatttg 744910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 11694283 - 11694216
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| ||||||||| ||||| |||  |||||||  |||| |||||||||||||||||||||||    
11694283 aaatttgaccataagaatgctattttgttggtgtcattcaaaaatataaaaatttatattatatttgt 11694216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 35468724 - 35468789
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    ||||||||||||||||||||||||| |||  ||||| |  |||| |||| ||||||||||||||||    
35468724 aaatttgactataagaatgttattttgttggtgtcaataaaaaatataagaatttatattatattt 35468789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 12599519 - 12599587
Alignment:
183 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||||| |||| ||| |||||| ||| ||||||||   |||||||| ||||||||||||||||||    
12599519 taaatttgacgataaaaatattattttgttgatgtcattaagaaagataagaatttatattatatttgt 12599587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 11681709 - 11681642
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| ||||||||| |||||  ||  |||||||  |||| |||||||||||||||||||||||    
11681709 aaatttgaccataagaatgctatttgattggtgtcattcaaaaatataaaaatttatattatatttgt 11681642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 6786794 - 6786728
Alignment:
182 ataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 248  Q
    |||||||| |||||||||||| ||||| |||  |||||||  ||||||| |||||||||| ||||||    
6786794 ataaattttactataagaatgctattttgttggtgtcatttaaaaagattaaaatttatactatatt 6786728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 13277929 - 13278001
Alignment:
181 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcat 254  Q
    |||||||||| |||||| |||||||| | |||  ||| |||| ||||||||| ||||||||||||||| |||||    
13277929 aataaatttgcctataacaatgttatattgttagtgttattg-aaaagataataatttatattatattagtcat 13278001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 28189230 - 28189267
Alignment:
214 atgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||| ||||||||| |||||||||||||||||||    
28189230 atgtcattacaaaagatacaaatttatattatatttgt 28189267  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 43358746 - 43358815
Alignment:
181 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 250  Q
    ||||||||||||||||| |||||||||| |||  ||| |||  ||||||||| |||||||||||||||||    
43358746 aataaatttgactataaaaatgttattttgttggtgtaatttaaaaagataagaatttatattatatttg 43358815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 3434021 - 3434087
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||||||||||||||||||| |||   |||||| |||| ||||| ||||||||||||||||||    
3434021 aaatttgactataagaatgttattttgttagggtcatt-caaatgataagaatttatattatatttgt 3434087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 7192382 - 7192301
Alignment:
171 tatacccgttaataaatttgactataagaatgtta---tttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    ||||||| | |||||||||||||||||||||||||   ||| |||| ||| |||  ||||||||| ||||||||||||||||    
7192382 tatacccttaaataaatttgactataagaatgttaattttttgtttgtgttatttaaaaagataagaatttatattatattt 7192301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 7606262 - 7606312
Alignment:
198 gaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 248  Q
    ||||||||||| ||| ||||||||  |||||||||||||||||||||||||    
7606262 gaatgttattttgttgatgtcattcaaaaagataaaaatttatattatatt 7606312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 10039690 - 10039634
Alignment:
193 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    |||||| ||||||||| |||  |||||||  ||||||||||||||||||||||||||    
10039690 tataagcatgttattttgttggtgtcattagaaaagataaaaatttatattatattt 10039634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 5468068 - 5468146
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    ||||||||| |||||||||  |||||| |||||||| |  || ||||||||| ||||||||| |  |||||||||||||    
5468068 tatacccgtaaataaatttttctataataatgttatattattgatgtcattgaaaaagataagatcttatattatattt 5468146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 28069742 - 28069673
Alignment:
183 taaatttgactataagaatgtt-atttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||||| |||| |||||| |||| |||  |||||||  ||||||||| ||||||||||||||||||    
28069742 taaatttgacaataaaaatgtttattttgttagtgtcattcaaaaagataagaatttatattatatttgt 28069673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 24649959 - 24650039
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||| |||  |||||| || ||||||||||||||| ||   | |||||  ||||||||| ||||||||||||||||||    
24649959 tataccctttagcaaatttaaccataagaatgttattttgtcggtctcattcaaaaagataagaatttatattatatttgt 24650039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 38237522 - 38237486
Alignment:
215 tgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||| ||||||||| ||||||||||||||||||    
38237522 tgtcattgaaaaagataagaatttatattatatttgt 38237486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 10214407 - 10214327
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||| | |||||||||||||||||||||||||||| |||  |||||||  || | |||| ||||| ||||||||||||    
10214407 tatacccttaaataaatttgactataagaatgttattttgttggtgtcattcaaatatataagaatttgtattatatttgt 10214327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 24670087 - 24670152
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    ||||||| ||||||||||||||| |  ||||||| |||  ||||||||| ||||||||||||||||    
24670087 aaatttgtctataagaatgttatattttttatgttatttaaaaagataagaatttatattatattt 24670152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 48458044 - 48458107
Alignment:
188 ttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||||||||| ||||| |||| ||| |||  ||||||||| | ||||||||||||||||    
48458044 ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt 48458107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 47044920 - 47044843
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 248  Q
    ||||||| | || |||||||| |||||||||||||||| | |  ||| |||| ||||||||| |||||| ||||||||    
47044920 tatacccttgaacaaatttgattataagaatgttattttgctggtgttattgaaaaagataagaatttaaattatatt 47044843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 7456698 - 7456642
Alignment:
192 ctataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt 248  Q
    |||||| |||||||| | ||| ||||||||  ||||||||||| |||||||||||||    
7456698 ctataataatgttatattgttgatgtcattaaaaaagataaaattttatattatatt 7456642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 21038538 - 21038574
Alignment:
215 tgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||  ||||||||||||||||||||||||||||    
21038538 tgtcattagaaaagataaaaatttatattatatttgt 21038574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 46250971 - 46250891
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||| | || ||||||||  ||||||||||||||| ||| |||| |||  || ||| || ||||||||||||||||||    
46250971 tatacccttaaacaaatttgatcataagaatgttattttgttgatgtaattcaaagagaaaagaatttatattatatttgt 46250891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 50585738 - 50585806
Alignment:
183 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||||| |||||||| |||||| |||  ||| |||  ||||||||||||||||||||||||||||    
50585738 taaatttgacaataagaatattattttgttggtgttattcaaaaagataaaaatttatattatatttgt 50585806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 28247325 - 28247375
Alignment:
200 atgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 250  Q
    ||||||| ||||| ||||||||| ||| |||||||||||||||||||||||    
28247325 atgttatatagttgatgtcattgaaaatgataaaaatttatattatatttg 28247375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 2594478 - 2594545
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| |||| |||||||||| | |  |||||||  ||||||||| ||||||||||||||||||    
2594478 aaatttgaccataacaatgttattttgctggtgtcattcaaaaagataagaatttatattatatttgt 2594545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 36643648 - 36643588
Alignment:
191 actataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||||||||||||| |||  | |||||  ||| ||||| ||||||||||||||||||    
36643648 actataagaatgttattttgttggtatcattcaaaacgataagaatttatattatatttgt 36643588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 1284155 - 1284222
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||| |||||||||||||||||| |||  |||||||  |||||||| |||||||| ||||||||||    
1284155 aaatttcactataagaatgttattttgttagtgtcattcaaaaagatacaaatttatgttatatttgt 1284222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 3501464 - 3501394
Alignment:
181 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||||||||||| |||||||||| |||  |||||||  ||| ||||| || |||||||||||||||    
3501464 aataaatttgactataaaaatgttattttgttggtgtcattcaaaatgataagaacttatattatatttgt 3501394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 11420492 - 11420422
Alignment:
181 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||||||||||||||| |||||| |||  |||  ||  ||||||||| ||||||||||||||||||    
11420492 aataaatttgactataagaatattattttgttggtgttgttcaaaaagataagaatttatattatatttgt 11420422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 34151099 - 34151177
Alignment:
171 tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    ||||||| | |||| |||||||||||| |||  ||||| |||  |||||||  ||||||||| ||||||||||||||||    
34151099 tatacccttaaatagatttgactataataatcctattttgttggtgtcatttaaaaagataagaatttatattatattt 34151177  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 4438535 - 4438600
Alignment:
186 atttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||| ||||||||||||||| | |||  | |||||  ||||||||| ||||||||||||||||||    
4438535 atttgtctataagaatgttatattgttggtatcattaaaaaagataagaatttatattatatttgt 4438600  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 36067954 - 36068011
Alignment:
193 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 250  Q
    |||||||||| ||||| |||||||| |||  ||||||||| || ||||||||||||||    
36067954 tataagaatgctattttgtttatgttatttaaaaagataagaacttatattatatttg 36068011  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 2442259 - 2442311
Alignment:
199 aatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||| | ||| |||| |||  ||||||||||||||||||||||||||||    
2442259 aatgttatattgttgatgttattaaaaaagataaaaatttatattatatttgt 2442311  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 8659205 - 8659272
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||| |||| | ||||||||||||||  || ||||| ||| ||||||||||||||||||||||||    
8659205 aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt 8659272  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 6295119 - 6295051
Alignment:
181 aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    |||||||||| ||||||||||||||  |  |||||||||||  ||||||||| ||||||| ||||||||    
6295119 aataaatttgtctataagaatgttacattttttatgtcattcaaaaagataagaatttatgttatattt 6295051  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 12294446 - 12294512
Alignment:
184 aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| || |||||||||||| |||  |||||||  ||||||||| ||||||||||||||||||    
12294446 aaatttgaccatcagaatgttattttgttg-tgtcattttaaaagataagaatttatattatatttgt 12294512  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 10427483 - 10427548
Alignment:
183 taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    |||||||||| ||||||||| ||||| ||| ||||||||  |||| |||| ||||||||||||||||    
10427483 taaatttgac-ataagaatgctattttgttgatgtcattaaaaaaaataagaatttatattatattt 10427548  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 26542695 - 26542732
Alignment:
214 atgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    ||||||||| ||||||||||| ||||||||||||||||    
26542695 atgtcattgaaaaagataaaattttatattatatttgt 26542732  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 51229348 - 51229291
Alignment:
193 tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg 250  Q
    ||||||||| |||  | ||| ||||||||| ||| |||||||||||||||||||||||    
51229348 tataagaattttaaattgttgatgtcattgaaaatgataaaaatttatattatatttg 51229291  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 36564079 - 36564131
Alignment:
197 agaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt 249  Q
    |||||||||||| ||| ||||||||  |||| |||| ||||||||||||||||    
36564079 agaatgttattttgttgatgtcattaaaaaaaataagaatttatattatattt 36564131  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 53728 - 53764
Alignment:
215 tgtcattgcaaaagataaaaatttatattatatttgt 251  Q
    |||||||  ||||||||||||||||||||||||||||    
53728 tgtcattaaaaaagataaaaatttatattatatttgt 53764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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