View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_low_15 (Length: 399)
Name: NF0548_low_15
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0548_low_15 |
 |  |
|
[»] scaffold0455 (1 HSPs) |
 |  |  |
|
[»] scaffold0038 (3 HSPs) |
 |  |  |
|
[»] scaffold0009 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0455 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 11736 - 11381
Alignment:
Q |
30 |
gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa |
129 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
11736 |
gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa |
11637 |
T |
 |
Q |
130 |
gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga |
229 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
11636 |
gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga |
11537 |
T |
 |
Q |
230 |
taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaa |
329 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
11536 |
taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatactaaatgattcatagtcacaacaataatatgtcgtaaaa |
11437 |
T |
 |
Q |
330 |
taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc |
385 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
11436 |
taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc |
11381 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 28133700 - 28133345
Alignment:
Q |
30 |
gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa |
129 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
28133700 |
gttcctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaa |
28133601 |
T |
 |
Q |
130 |
gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga |
229 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
28133600 |
gagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaaga |
28133501 |
T |
 |
Q |
230 |
taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaa |
329 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
28133500 |
taaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatactaaatgattcatagtcacaacaataatatgtcgtaaaa |
28133401 |
T |
 |
Q |
330 |
taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc |
385 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
28133400 |
taccaattgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgccc |
28133345 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 34 - 381
Target Start/End: Original strand, 28116429 - 28116776
Alignment:
Q |
34 |
ctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagaga |
133 |
Q |
|
|
|||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |
|
|
T |
28116429 |
ctaattggaataaaaaatatggagaaagaatatatttaagtatattctttaataaagaattgtatcaatgatctatacttctatactatttacgaagaga |
28116528 |
T |
 |
Q |
134 |
atgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaa |
233 |
Q |
|
|
||||||||| ||||| ||| ||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
T |
28116529 |
atgcatagtattaagctgattttttcgcttccaattatatacgcgtaaattaatttgactataagaatgttatttagtttatgtcactgcaaaagataaa |
28116628 |
T |
 |
Q |
234 |
aatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaatacc |
333 |
Q |
|
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||| |
|
|
T |
28116629 |
aatttatattatatttgtcattgcaaaagatgcttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcgtaaattacc |
28116728 |
T |
 |
Q |
334 |
aattgcaaaaactgcagatatgtggcattcatatattggtcaaaattt |
381 |
Q |
|
|
||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
T |
28116729 |
aattgcaaaaactttaaatatgtggcattcatatattggtcaaaattt |
28116776 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 38 - 384
Target Start/End: Original strand, 28176547 - 28176895
Alignment:
Q |
38 |
gtggaataaaaaatatggagaaaaa-atatatttaagtttattctttaataaa-gaattgtatcagtaatctatacttctatactatttacaaagagaat |
135 |
Q |
|
|
||||||||||||| ||||| ||||| |||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
28176547 |
gtggaataaaaaacatggaaaaaaatatatatttaagtctactctttaataaaagaattgtatcagtaatctatacttctatactatttacaaagagaat |
28176646 |
T |
 |
Q |
136 |
gcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaa |
235 |
Q |
|
|
| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||| || |
|
|
T |
28176647 |
gtatagttttaagctgactttttcgctttcaattatatacccgtaaataaatttgactataagaatgttatttagttgatgtcactgcaaaaaataagaa |
28176746 |
T |
 |
Q |
236 |
tttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaa |
335 |
Q |
|
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| || |
|
|
T |
28176747 |
tttatattatatttgtcattgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaa |
28176846 |
T |
 |
Q |
336 |
ttgcaaaaactgcagatatgtggcattcatatattggtcaaaatttgcc |
384 |
Q |
|
|
|||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
T |
28176847 |
ttgcaaaaactgtagatatgtggcattcatatattggtcaaaagttgcc |
28176895 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 384
Target Start/End: Original strand, 28219320 - 28219662
Alignment:
Q |
45 |
aaaaaatatggagaaaa-aatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagagaatgcatagtt |
143 |
Q |
|
|
||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
28219320 |
aaaaaatatagagaaaaaaatatatttaagtcaattctttaataaagaattgtatcactaatctatacttatatactatttacaaagagaatgcatagtt |
28219419 |
T |
 |
Q |
144 |
ttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatatt |
243 |
Q |
|
|
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
T |
28219420 |
ttaagctgagattttcgcttccaattatatacccgttaataaatttgactataagaatgttatttagtt--tgtcattgcaaaagataagaatttatatt |
28219517 |
T |
 |
Q |
244 |
atatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaa |
343 |
Q |
|
|
||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
|
|
T |
28219518 |
atatttgtctttgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaattgcaaag |
28219617 |
T |
 |
Q |
344 |
actgcagatatg--tg--gcattcatatattggtcaaaatttgcc |
384 |
Q |
|
|
| || ||||||| || |||||||||||||||||||| ||||| |
|
|
T |
28219618 |
aatgtagatatgcatgcaacattcatatattggtcaaaagttgcc |
28219662 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 164 - 384
Target Start/End: Complemental strand, 28220435 - 28220218
Alignment:
Q |
164 |
caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaaga |
263 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
T |
28220435 |
caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatatttttcattgcaaaaga |
28220336 |
T |
 |
Q |
264 |
tagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattc |
363 |
Q |
|
|
|| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||||||||||| |
|
|
T |
28220335 |
tacttccttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattc |
28220239 |
T |
 |
Q |
364 |
atatattggtcaaaatttgcc |
384 |
Q |
|
|
|||||||||||||||| |||| |
|
|
T |
28220238 |
atatattggtcaaaatgtgcc |
28220218 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 110 - 311
Target Start/End: Complemental strand, 28177685 - 28177484
Alignment:
Q |
110 |
acttctatactatttacaaagagaatgcatagttttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttattta |
209 |
Q |
|
|
|||||||||||||||| ||||||||| ||| |||||||| ||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
T |
28177685 |
acttctatactatttataaagagaatacattgttttaagctgactttttggcttccaattatatacccgttaatatatttgattataagaatgttattta |
28177586 |
T |
 |
Q |
210 |
gtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcac |
309 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
T |
28177585 |
gtttatgtcattgcaaaagataataatttatattatatttttcattgaaaaagatacttccttattaagtaatttataatattaaatgattcatagtcac |
28177486 |
T |
 |
Q |
310 |
aa |
311 |
Q |
|
|
|| |
|
|
T |
28177485 |
aa |
28177484 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 32279684 - 32279617
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| |||| |||||||||| ||| ||||||| ||||||||| |||||||||||||||||| |
|
|
T |
32279684 |
aaatttgaccataaaaatgttattttgttggtgtcattaaaaaagataagaatttatattatatttgt |
32279617 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 28220515 - 28220457
Alignment:
Q |
33 |
cctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaaga |
91 |
Q |
|
|
||||||||||| | | |||||||||||||||||||||||||| ||||||| ||||||| |
|
|
T |
28220515 |
cctaagtggaaaatacaatatggagaaaaaatatatttaagtcaattctttcataaaga |
28220457 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 28177482 - 28177447
Alignment:
Q |
349 |
agatatgtggcattcatatattggtcaaaatttgcc |
384 |
Q |
|
|
||||||||||||||||||||||||||||||| |||| |
|
|
T |
28177482 |
agatatgtggcattcatatattggtcaaaatgtgcc |
28177447 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 29729734 - 29729667
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||||||||| | ||||||| ||| || ||||| ||||||||| |||||||||||||||||| |
|
|
T |
29729734 |
aaatttgactataaaatagttattttgttgatttcattaaaaaagataagaatttatattatatttgt |
29729667 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 32799515 - 32799459
Alignment:
Q |
193 |
tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
|||||||||||||| | ||| ||| |||| ||||||||||||| |||||||||||| |
|
|
T |
32799515 |
tataagaatgttatattgttgatgacattcaaaaagataaaaatctatattatattt |
32799459 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0038 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 384
Target Start/End: Original strand, 19818 - 20160
Alignment:
Q |
45 |
aaaaaatatggagaaaa-aatatatttaagtttattctttaataaagaattgtatcagtaatctatacttctatactatttacaaagagaatgcatagtt |
143 |
Q |
|
|
||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
19818 |
aaaaaatatagagaaaaaaatatatttaagtcaattctttaataaagaattgtatcactaatctatacttatatactatttacaaagagaatgcatagtt |
19917 |
T |
 |
Q |
144 |
ttaagatgactttttcgcttcaaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatatt |
243 |
Q |
|
|
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
T |
19918 |
ttaagctgagattttcgcttccaattatatacccgttaataaatttgactataagaatgttatttagtt--tgtcattgcaaaagataagaatttatatt |
20015 |
T |
 |
Q |
244 |
atatttgtcattgcaaaagatagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaa |
343 |
Q |
|
|
||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
|
|
T |
20016 |
atatttgtctttgcataagatacttccttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaattgcaaag |
20115 |
T |
 |
Q |
344 |
actgcagatatg--tg--gcattcatatattggtcaaaatttgcc |
384 |
Q |
|
|
| || ||||||| || |||||||||||||||||||| ||||| |
|
|
T |
20116 |
aatgtagatatgcatgcaacattcatatattggtcaaaagttgcc |
20160 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 164 - 384
Target Start/End: Complemental strand, 20933 - 20716
Alignment:
Q |
164 |
caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcattgcaaaaga |
263 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
T |
20933 |
caaattatatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataagaatttatattatatttttcattgcaaaaga |
20834 |
T |
 |
Q |
264 |
tagttccttattaagtaatttagaatataaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattc |
363 |
Q |
|
|
|| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||||||||||| |
|
|
T |
20833 |
tacttccttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattc |
20737 |
T |
 |
Q |
364 |
atatattggtcaaaatttgcc |
384 |
Q |
|
|
|||||||||||||||| |||| |
|
|
T |
20736 |
atatattggtcaaaatgtgcc |
20716 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 21013 - 20955
Alignment:
Q |
33 |
cctaagtggaataaaaaatatggagaaaaaatatatttaagtttattctttaataaaga |
91 |
Q |
|
|
||||||||||| | | |||||||||||||||||||||||||| ||||||| ||||||| |
|
|
T |
21013 |
cctaagtggaaaatacaatatggagaaaaaatatatttaagtcaattctttcataaaga |
20955 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 14001190 - 14001123
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| ||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||| |
|
|
T |
14001190 |
aaatttgacaataagaatgttattttgttgatgtcattcaaaaagataagaatttatattatatttgt |
14001123 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 18282336 - 18282269
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||||||||||||| |||||| ||| ||||||| ||||||||||||||| |||| ||||||| |
|
|
T |
18282336 |
aaatttgactataagaatattattttgttggtgtcattcaaaaagataaaaatttgtattctatttgt |
18282269 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 29686294 - 29686227
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||| ||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||| |
|
|
T |
29686294 |
aaattttactataagaatgttaatttattggtgtcattcaaaaagataagaatttatattatatttgt |
29686227 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 14000927 - 14000849
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
||||||| | || ||||||||||||| |||| |||| ||| ||||||| |||||||||||||||||||||||||| |
|
|
T |
14000927 |
tatacccttaaacaaatttgactatagaaatgcaattttgttggtgtcattaaaaaagataaaaatttatattatattt |
14000849 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 23085411 - 23085343
Alignment:
Q |
183 |
taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| || ||||||||||||| ||| ||||| | |||| |||| |||||||||||||||||| |
|
|
T |
23085411 |
taaatttgattaaaagaatgttattttgttggtgtcagttaaaaaaataagaatttatattatatttgt |
23085343 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 23914563 - 23914643
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||| | || ||||||| ||||||||||||||| | |||| ||| |||| ||||||||| |||||||||||||||||| |
|
|
T |
23914563 |
tatacccttaaacaaatttggctataagaatgttatattgtttgtgttattgaaaaagataagaatttatattatatttgt |
23914643 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 744979 - 744910
Alignment:
Q |
181 |
aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg |
250 |
Q |
|
|
|||||||||| ||||||||||||||| | ||| ||| ||| ||||||||||||||||||||||||||| |
|
|
T |
744979 |
aataaatttgtctataagaatgttatattgttggtgttatttaaaaagataaaaatttatattatatttg |
744910 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 11694283 - 11694216
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| ||||||||| ||||| ||| ||||||| |||| ||||||||||||||||||||||| |
|
|
T |
11694283 |
aaatttgaccataagaatgctattttgttggtgtcattcaaaaatataaaaatttatattatatttgt |
11694216 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 35468724 - 35468789
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
||||||||||||||||||||||||| ||| ||||| | |||| |||| |||||||||||||||| |
|
|
T |
35468724 |
aaatttgactataagaatgttattttgttggtgtcaataaaaaatataagaatttatattatattt |
35468789 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 12599519 - 12599587
Alignment:
Q |
183 |
taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||||| |||| ||| |||||| ||| |||||||| |||||||| |||||||||||||||||| |
|
|
T |
12599519 |
taaatttgacgataaaaatattattttgttgatgtcattaagaaagataagaatttatattatatttgt |
12599587 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 11681709 - 11681642
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| ||||||||| ||||| || ||||||| |||| ||||||||||||||||||||||| |
|
|
T |
11681709 |
aaatttgaccataagaatgctatttgattggtgtcattcaaaaatataaaaatttatattatatttgt |
11681642 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 6786794 - 6786728
Alignment:
Q |
182 |
ataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt |
248 |
Q |
|
|
|||||||| |||||||||||| ||||| ||| ||||||| ||||||| |||||||||| |||||| |
|
|
T |
6786794 |
ataaattttactataagaatgctattttgttggtgtcatttaaaaagattaaaatttatactatatt |
6786728 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 13277929 - 13278001
Alignment:
Q |
181 |
aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgtcat |
254 |
Q |
|
|
|||||||||| |||||| |||||||| | ||| ||| |||| ||||||||| ||||||||||||||| ||||| |
|
|
T |
13277929 |
aataaatttgcctataacaatgttatattgttagtgttattg-aaaagataataatttatattatattagtcat |
13278001 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 28189230 - 28189267
Alignment:
Q |
214 |
atgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||| ||||||||| ||||||||||||||||||| |
|
|
T |
28189230 |
atgtcattacaaaagatacaaatttatattatatttgt |
28189267 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 43358746 - 43358815
Alignment:
Q |
181 |
aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg |
250 |
Q |
|
|
||||||||||||||||| |||||||||| ||| ||| ||| ||||||||| ||||||||||||||||| |
|
|
T |
43358746 |
aataaatttgactataaaaatgttattttgttggtgtaatttaaaaagataagaatttatattatatttg |
43358815 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 3434021 - 3434087
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||||||||||||||||||| ||| |||||| |||| ||||| |||||||||||||||||| |
|
|
T |
3434021 |
aaatttgactataagaatgttattttgttagggtcatt-caaatgataagaatttatattatatttgt |
3434087 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 7192382 - 7192301
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgtta---tttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
||||||| | ||||||||||||||||||||||||| ||| |||| ||| ||| ||||||||| |||||||||||||||| |
|
|
T |
7192382 |
tatacccttaaataaatttgactataagaatgttaattttttgtttgtgttatttaaaaagataagaatttatattatattt |
7192301 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 7606262 - 7606312
Alignment:
Q |
198 |
gaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt |
248 |
Q |
|
|
||||||||||| ||| |||||||| ||||||||||||||||||||||||| |
|
|
T |
7606262 |
gaatgttattttgttgatgtcattcaaaaagataaaaatttatattatatt |
7606312 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 10039690 - 10039634
Alignment:
Q |
193 |
tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
|||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||| |
|
|
T |
10039690 |
tataagcatgttattttgttggtgtcattagaaaagataaaaatttatattatattt |
10039634 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 5468068 - 5468146
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
||||||||| ||||||||| |||||| |||||||| | || ||||||||| ||||||||| | ||||||||||||| |
|
|
T |
5468068 |
tatacccgtaaataaatttttctataataatgttatattattgatgtcattgaaaaagataagatcttatattatattt |
5468146 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 28069742 - 28069673
Alignment:
Q |
183 |
taaatttgactataagaatgtt-atttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||||| |||| |||||| |||| ||| ||||||| ||||||||| |||||||||||||||||| |
|
|
T |
28069742 |
taaatttgacaataaaaatgtttattttgttagtgtcattcaaaaagataagaatttatattatatttgt |
28069673 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 24649959 - 24650039
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||| ||| |||||| || ||||||||||||||| || | ||||| ||||||||| |||||||||||||||||| |
|
|
T |
24649959 |
tataccctttagcaaatttaaccataagaatgttattttgtcggtctcattcaaaaagataagaatttatattatatttgt |
24650039 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 38237522 - 38237486
Alignment:
Q |
215 |
tgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||| ||||||||| |||||||||||||||||| |
|
|
T |
38237522 |
tgtcattgaaaaagataagaatttatattatatttgt |
38237486 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 10214407 - 10214327
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||| | |||||||||||||||||||||||||||| ||| ||||||| || | |||| ||||| |||||||||||| |
|
|
T |
10214407 |
tatacccttaaataaatttgactataagaatgttattttgttggtgtcattcaaatatataagaatttgtattatatttgt |
10214327 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 24670087 - 24670152
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
||||||| ||||||||||||||| | ||||||| ||| ||||||||| |||||||||||||||| |
|
|
T |
24670087 |
aaatttgtctataagaatgttatattttttatgttatttaaaaagataagaatttatattatattt |
24670152 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 48458044 - 48458107
Alignment:
Q |
188 |
ttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||||||||| ||||| |||| ||| ||| ||||||||| | |||||||||||||||| |
|
|
T |
48458044 |
ttgactataagaatgctattttgtttgtgttattaaaaaagataagactttatattatatttgt |
48458107 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 47044920 - 47044843
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt |
248 |
Q |
|
|
||||||| | || |||||||| |||||||||||||||| | | ||| |||| ||||||||| |||||| |||||||| |
|
|
T |
47044920 |
tatacccttgaacaaatttgattataagaatgttattttgctggtgttattgaaaaagataagaatttaaattatatt |
47044843 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 7456698 - 7456642
Alignment:
Q |
192 |
ctataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatt |
248 |
Q |
|
|
|||||| |||||||| | ||| |||||||| ||||||||||| ||||||||||||| |
|
|
T |
7456698 |
ctataataatgttatattgttgatgtcattaaaaaagataaaattttatattatatt |
7456642 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 21038538 - 21038574
Alignment:
Q |
215 |
tgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||| |||||||||||||||||||||||||||| |
|
|
T |
21038538 |
tgtcattagaaaagataaaaatttatattatatttgt |
21038574 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 46250971 - 46250891
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||| | || |||||||| ||||||||||||||| ||| |||| ||| || ||| || |||||||||||||||||| |
|
|
T |
46250971 |
tatacccttaaacaaatttgatcataagaatgttattttgttgatgtaattcaaagagaaaagaatttatattatatttgt |
46250891 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 50585738 - 50585806
Alignment:
Q |
183 |
taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||||| |||||||| |||||| ||| ||| ||| |||||||||||||||||||||||||||| |
|
|
T |
50585738 |
taaatttgacaataagaatattattttgttggtgttattcaaaaagataaaaatttatattatatttgt |
50585806 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 28247325 - 28247375
Alignment:
Q |
200 |
atgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg |
250 |
Q |
|
|
||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| |
|
|
T |
28247325 |
atgttatatagttgatgtcattgaaaatgataaaaatttatattatatttg |
28247375 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 2594478 - 2594545
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| |||| |||||||||| | | ||||||| ||||||||| |||||||||||||||||| |
|
|
T |
2594478 |
aaatttgaccataacaatgttattttgctggtgtcattcaaaaagataagaatttatattatatttgt |
2594545 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 36643648 - 36643588
Alignment:
Q |
191 |
actataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||||||||||||| ||| | ||||| ||| ||||| |||||||||||||||||| |
|
|
T |
36643648 |
actataagaatgttattttgttggtatcattcaaaacgataagaatttatattatatttgt |
36643588 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 1284155 - 1284222
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||| |||||||||||||||||| ||| ||||||| |||||||| |||||||| |||||||||| |
|
|
T |
1284155 |
aaatttcactataagaatgttattttgttagtgtcattcaaaaagatacaaatttatgttatatttgt |
1284222 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 3501464 - 3501394
Alignment:
Q |
181 |
aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||||||||||| |||||||||| ||| ||||||| ||| ||||| || ||||||||||||||| |
|
|
T |
3501464 |
aataaatttgactataaaaatgttattttgttggtgtcattcaaaatgataagaacttatattatatttgt |
3501394 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 11420492 - 11420422
Alignment:
Q |
181 |
aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||||||||||||||| |||||| ||| ||| || ||||||||| |||||||||||||||||| |
|
|
T |
11420492 |
aataaatttgactataagaatattattttgttggtgttgttcaaaaagataagaatttatattatatttgt |
11420422 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 34151099 - 34151177
Alignment:
Q |
171 |
tatacccgttaataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
||||||| | |||| |||||||||||| ||| ||||| ||| ||||||| ||||||||| |||||||||||||||| |
|
|
T |
34151099 |
tatacccttaaatagatttgactataataatcctattttgttggtgtcatttaaaaagataagaatttatattatattt |
34151177 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 4438535 - 4438600
Alignment:
Q |
186 |
atttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||| ||||||||||||||| | ||| | ||||| ||||||||| |||||||||||||||||| |
|
|
T |
4438535 |
atttgtctataagaatgttatattgttggtatcattaaaaaagataagaatttatattatatttgt |
4438600 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 36067954 - 36068011
Alignment:
Q |
193 |
tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg |
250 |
Q |
|
|
|||||||||| ||||| |||||||| ||| ||||||||| || |||||||||||||| |
|
|
T |
36067954 |
tataagaatgctattttgtttatgttatttaaaaagataagaacttatattatatttg |
36068011 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 2442259 - 2442311
Alignment:
Q |
199 |
aatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
|||||||| | ||| |||| ||| |||||||||||||||||||||||||||| |
|
|
T |
2442259 |
aatgttatattgttgatgttattaaaaaagataaaaatttatattatatttgt |
2442311 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 8659205 - 8659272
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||| |||| | |||||||||||||| || ||||| ||| |||||||||||||||||||||||| |
|
|
T |
8659205 |
aaatttgtctatgaaaatgttatttagttagtgccattgaaaatgataaaaatttatattatatttgt |
8659272 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 6295119 - 6295051
Alignment:
Q |
181 |
aataaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
|||||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||| |||||||| |
|
|
T |
6295119 |
aataaatttgtctataagaatgttacattttttatgtcattcaaaaagataagaatttatgttatattt |
6295051 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 12294446 - 12294512
Alignment:
Q |
184 |
aaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| || |||||||||||| ||| ||||||| ||||||||| |||||||||||||||||| |
|
|
T |
12294446 |
aaatttgaccatcagaatgttattttgttg-tgtcattttaaaagataagaatttatattatatttgt |
12294512 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 10427483 - 10427548
Alignment:
Q |
183 |
taaatttgactataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
|||||||||| ||||||||| ||||| ||| |||||||| |||| |||| |||||||||||||||| |
|
|
T |
10427483 |
taaatttgac-ataagaatgctattttgttgatgtcattaaaaaaaataagaatttatattatattt |
10427548 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 26542695 - 26542732
Alignment:
Q |
214 |
atgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||||| ||||||||||| |||||||||||||||| |
|
|
T |
26542695 |
atgtcattgaaaaagataaaattttatattatatttgt |
26542732 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 51229348 - 51229291
Alignment:
Q |
193 |
tataagaatgttatttagtttatgtcattgcaaaagataaaaatttatattatatttg |
250 |
Q |
|
|
||||||||| ||| | ||| ||||||||| ||| ||||||||||||||||||||||| |
|
|
T |
51229348 |
tataagaattttaaattgttgatgtcattgaaaatgataaaaatttatattatatttg |
51229291 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 36564079 - 36564131
Alignment:
Q |
197 |
agaatgttatttagtttatgtcattgcaaaagataaaaatttatattatattt |
249 |
Q |
|
|
|||||||||||| ||| |||||||| |||| |||| |||||||||||||||| |
|
|
T |
36564079 |
agaatgttattttgttgatgtcattaaaaaaaataagaatttatattatattt |
36564131 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 53728 - 53764
Alignment:
Q |
215 |
tgtcattgcaaaagataaaaatttatattatatttgt |
251 |
Q |
|
|
||||||| |||||||||||||||||||||||||||| |
|
|
T |
53728 |
tgtcattaaaaaagataaaaatttatattatatttgt |
53764 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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