View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_low_16 (Length: 399)
Name: NF0548_low_16
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 63 - 380
Target Start/End: Complemental strand, 28421950 - 28421631
Alignment:
| Q |
63 |
tcctgtttattactggatgatgctatgatttatgagtctagctagggactcttgggtgttgaattttattataatggtttcaaata--acacataaagga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28421950 |
tcctgtttattactggatgatgctatgatttatgagtctagctagggactcttgggtgttgaattttattataatggtttcaaatataacacataaagga |
28421851 |
T |
|
| Q |
161 |
gaattctttaattgatgttctgaaatggatttgtcttcaagtgtttggatgatattagattcctatcaccccactattgaatatcttcagagaacgagat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28421850 |
gaattctttaattgatgttctgaaatggatttgtcttcaagtgtttggatgatattagattcctatcaccccactattgaatatcttcagagaacgagat |
28421751 |
T |
|
| Q |
261 |
ctttcactcccttgtccttttccatttatactttgtgttgttccttttaagttttattattattacttttggtacacgtgatattgtatatgaaataata |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28421750 |
ctttcactcccttgtccttttccatttatactttgtgttgttccttttaagttttattattattacttttggtacacgtgatattgtatatgaaataata |
28421651 |
T |
|
| Q |
361 |
catcagagtcttaccattag |
380 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28421650 |
catcagagtcttaccattag |
28421631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1250 times since January 2019
Visitors: 3665