View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_17 (Length: 390)

Name: NF0548_low_17
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_17
NF0548_low_17
[»] chr6 (7 HSPs)
chr6 (61-320)||(24350420-24350679)
chr6 (66-311)||(24842824-24843068)
chr6 (103-294)||(30845096-30845287)
chr6 (66-252)||(10772531-10772717)
chr6 (102-232)||(10670319-10670448)
chr6 (66-164)||(31026651-31026749)
chr6 (195-244)||(9566640-9566689)
[»] chr2 (10 HSPs)
chr2 (68-321)||(14951069-14951322)
chr2 (69-324)||(6186501-6186755)
chr2 (66-309)||(38531603-38531845)
chr2 (66-283)||(9910252-9910470)
chr2 (74-254)||(1532986-1533166)
chr2 (97-252)||(27888484-27888638)
chr2 (66-164)||(6705281-6705379)
chr2 (66-243)||(40899904-40900081)
chr2 (66-151)||(33544077-33544163)
chr2 (213-301)||(33544179-33544267)
[»] chr5 (16 HSPs)
chr5 (69-327)||(12155919-12156177)
chr5 (68-294)||(40600128-40600355)
chr5 (66-294)||(42269049-42269278)
chr5 (66-282)||(11470504-11470724)
chr5 (66-252)||(26331699-26331885)
chr5 (70-233)||(24867387-24867550)
chr5 (66-243)||(26331367-26331543)
chr5 (66-164)||(40680647-40680744)
chr5 (66-164)||(30248309-30248408)
chr5 (213-290)||(34574451-34574528)
chr5 (104-164)||(42221130-42221190)
chr5 (66-164)||(23247102-23247200)
chr5 (213-295)||(30248411-30248493)
chr5 (213-294)||(42221193-42221274)
chr5 (70-122)||(34574554-34574606)
chr5 (104-134)||(16376756-16376786)
[»] chr1 (10 HSPs)
chr1 (69-320)||(14351424-14351674)
chr1 (66-242)||(2077718-2077895)
chr1 (66-301)||(10494473-10494709)
chr1 (66-244)||(27787029-27787207)
chr1 (66-242)||(29099215-29099391)
chr1 (104-243)||(11814323-11814461)
chr1 (66-164)||(15495649-15495747)
chr1 (66-252)||(25537390-25537572)
chr1 (159-244)||(26842258-26842343)
chr1 (66-126)||(26842335-26842396)
[»] chr4 (8 HSPs)
chr4 (68-327)||(52635323-52635581)
chr4 (68-183)||(55728328-55728443)
chr4 (74-244)||(45872810-45872979)
chr4 (66-252)||(42677881-42678067)
chr4 (213-327)||(55728449-55728562)
chr4 (67-164)||(12130295-12130392)
chr4 (66-160)||(14440879-14440973)
chr4 (104-134)||(7971680-7971710)
[»] chr7 (7 HSPs)
chr7 (67-294)||(24717683-24717911)
chr7 (66-301)||(43047929-43048165)
chr7 (66-244)||(32978896-32979074)
chr7 (67-243)||(21590826-21591002)
chr7 (171-244)||(26711907-26711981)
chr7 (104-144)||(7437183-7437223)
chr7 (195-243)||(34293802-34293850)
[»] chr3 (7 HSPs)
chr3 (69-210)||(52984633-52984775)
chr3 (66-246)||(46743173-46743353)
chr3 (66-290)||(31698872-31699097)
chr3 (69-144)||(3460827-3460902)
chr3 (104-183)||(52991649-52991727)
chr3 (147-211)||(31625661-31625725)
chr3 (285-327)||(52984592-52984634)
[»] chr8 (6 HSPs)
chr8 (66-294)||(5514956-5515185)
chr8 (105-244)||(3763285-3763424)
chr8 (66-252)||(15050320-15050504)
chr8 (66-243)||(10181740-10181917)
chr8 (105-230)||(39580354-39580478)
chr8 (79-122)||(25142693-25142736)
[»] scaffold0974 (1 HSPs)
scaffold0974 (66-294)||(2651-2880)
[»] scaffold0083 (1 HSPs)
scaffold0083 (74-205)||(2830-2963)
[»] scaffold0027 (1 HSPs)
scaffold0027 (66-164)||(2571-2670)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 61 - 320
Target Start/End: Complemental strand, 24350679 - 24350420
Alignment:
Q  61 tcaaactacaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtct 160  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24350679 tcaaactgcaaacaaatcaaaaacaccctctactgaggcccttgaaaccaatcaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtct 24350580  T
Q  161 aaactcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaat 260  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24350579 aaactcccgcgcaatagcagaaacaaattttgtgctaaaccgttgcaaaacccctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacacat 24350480  T
Q  261 tgcttctcttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaatcaccacc 320  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  24350479 tgcttctcttctgtagttgagcgcaattaagcacgtgtaaacacccaaaaaatcaccacc 24350420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 66 - 311
Target Start/End: Original strand, 24842824 - 24843068
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaact 165  Q
    ||||||||||||||||||||| ||||||| ||| ||  ||||||||||||||||||||||||||||||| |||||| |||||||||| || || |||||     
T  24842824 ctacaaacaaaccaaaaacaccctctactaagggccccgaaaccaataaaaactaaacaccaaaaccaaaaagtcagctccaaaaaccaacgtttaaaca 24842923  T
Q  166 cccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgctt 265  Q
    |||| ||| ||||| ||| ||||||||||| |||| ||||  |||| ||||||||| ||||||||||| |||||||||| ||||||| | ||  ||||||    
T  24842924 cccgagcagtagcaaaaacaaatcttgtgctaaactgttgttaaac-cctccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgctt 24843022  T
Q  266 ctcttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaa 311  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  24843023 ctcttctgcagttgagcgcaattaagcacatgtaaacaccccaaaa 24843068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 103 - 294
Target Start/End: Original strand, 30845096 - 30845287
Alignment:
Q  103 tgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaataaatcttgtgccaaaccg 202  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||| |||||||||||||| |||||||||| |||||||    
T  30845096 tgaaaccaataaaaactaaacaccaaaaccaaaaagtcatcttcaaaaaccaaagtctaaacacccacgcaatagcagaaacaaatcttgtgtcaaaccg 30845195  T
Q  203 ttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcac 294  Q
    ||||||||| ||||||||||||||||||||| |||||||||  |  |||| | ||  ||||||||||| | |||||||||||| ||||||||    
T  30845196 ttgcaaaacccctccaaaataaccatcaaacctaccaaaaatccaggtaaccgcaccttgcttctcttctacagttgagcgcagttaagcac 30845287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 66 - 252
Target Start/End: Original strand, 10772531 - 10772717
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaact 165  Q
    ||||||| ||||||||||||| ||| ||||||| |||  ||||||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||     
T  10772531 ctacaaataaaccaaaaacaccctccactgagggcctcaaaaccaataaaaactaaacaccagaaccaaaaagtcatctccaaaaatcaaagtctaaacg 10772630  T
Q  166 cccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 252  Q
    |  | ||||| ||||||| || |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||    
T  10772631 cttgagcaatggcagaaacaagtcttgtgccaaaccgttgcaaaacccatccaaaataaccatcaaacctaccaaaaacccgtgtaa 10772717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 10670448 - 10670319
Alignment:
Q  102 ttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaataaatcttgtgccaaacc 201  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||||| | ||||||||||  || ||||||||||||||| |||||||||| ||||||    
T  10670448 ttgaaaccaataaaaactaaacaccaaa-caaagaagtcatatccaaaatccaaagtctaaatgcctgcgcaatagcagaaacaaatcttgtgtcaaacc 10670350  T
Q  202 gttgcaaaactcctccaaaataaccatcaaa 232  Q
    |||| |||||  |||||||||||| ||||||    
T  10670349 gttgaaaaacctctccaaaataactatcaaa 10670319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 31026749 - 31026651
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||| ||||||| ||||  |||||||||||||||||  |||||| |||| ||||| ||||||||||| |||||||||||    
T  31026749 ctacaaacaaaccaaaaacaccctccactgagggccctcaaaaccaataaaaactaataaccaaa-ccaataagtcgtctccaaaaaccaaagtctaaac 31026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 9566640 - 9566689
Alignment:
Q  195 ccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 244  Q
    ||||||||||  |||||  |||||||||||||||||||| ||||||||||    
T  9566640 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaac 9566689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 68 - 321
Target Start/End: Complemental strand, 14951322 - 14951069
Alignment:
Q  68 acaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcc 167  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||    
T  14951322 acaaacaaaccaaaaacaccctctactgaggcccctgaaaccaataaaaactaaacacaaaaaccaagaaatcatctccaaacactaaagtctaaacacc 14951223  T
Q  168 cgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttct 267  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||    
T  14951222 cgcgcaatagcagaaacaaatcttgtgccaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgtgtaatcgcacattgcttct 14951123  T
Q  268 cttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaatcaccacct 321  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14951122 cttctgcagttgagcgcaattaagcacatgtaaacacccaaaaaatcaccacct 14951069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 69 - 324
Target Start/End: Complemental strand, 6186755 - 6186501
Alignment:
Q  69 caaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactccc 168  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6186755 caaacaaaacaaaaacactctctactgaggcccctgaaaccaataaaaattaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaacaccc 6186656  T
Q  169 gcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctc 268  Q
    ||||||||||| ||| |||||||||| |||||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||| ||  || ||||||    
T  6186655 gcgcaatagcaaaaacaaatcttgtgtcaaaccgttgcaaaaccccttcaaaataattatcaaacttaccaaaaactcgtgtaatcgcactttacttctc 6186556  T
Q  269 ttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaatcaccacctaaa 324  Q
    || ||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  6186555 ttctgcagttgagcgcaattaagcaaatgtaaacaccca-aaaatcaccacctaaa 6186501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 38531845 - 38531603
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaact 165  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||     
T  38531845 ctacaaacaaaccaaaaacaccatctactgaggcccccgaaaccaataaaaactaaacaccaaaaccaaaaagtcatctccaaaaaccaacgtctaaaca 38531746  T
Q  166 cccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgctt 265  Q
    || ||| | ||||||||| ||||||||||| |||| |||||||||| ||||||||| ||||||||||| |||||||||| ||||||| | ||  ||||||    
T  38531745 cctgcgtagtagcagaaacaaatcttgtgctaaactgttgcaaaac-cctccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgctt 38531647  T
Q  266 ctcttatgcagttgagcgcaattaagcacgtgtaaacacccaaa 309  Q
     |||| ||||||||||| || |||||||| ||||||||||||||    
T  38531646 ttcttctgcagttgagcacagttaagcacatgtaaacacccaaa 38531603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 66 - 283
Target Start/End: Original strand, 9910252 - 9910470
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactga-ggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||| ||||||||||||||| ||| ||||| |||||   |||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  9910252 ctacatacaaaccaaaaacaccctccactgaaggccccccaaactaataaaaactaaacaccataaccaaaaagtcatctccaaaaaccaaagtctaaac 9910351  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgct 264  Q
     || | ||||||||||||| || ||||||| |||||||||||||||| | || |||||||| ||||| | |||||||||||||||||| |  |  ||| |    
T  9910352 gcctgagcaatagcagaaacaagtcttgtgacaaaccgttgcaaaacccatcaaaaataactatcaatcctaccaaaaactcgtgtaaccgtactttgtt 9910451  T
Q  265 tctcttatgcagttgagcg 283  Q
    |||||| ||||||||||||    
T  9910452 tctcttctgcagttgagcg 9910470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 74 - 254
Target Start/End: Original strand, 1532986 - 1533166
Alignment:
Q  74 aaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgc 172  Q
    ||||||||||||| ||| ||| ||| ||||  |||||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||||    ||||    
T  1532986 aaaccaaaaacaccctccactaagggccctcaaaaccaataaaagctaaacaccaaa-ccaagaagtcatctccaaaaaccaaagtccaaacgtttgcgc 1533084  T
Q  173 aatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatc 254  Q
    ||||||||||| ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| |||| | |||||||    
T  1533085 aatagcagaaacaaatcttgtgccaaaccattaaaaaacctctccaaaataaccatcaaacttaccataaacccatgtaatc 1533166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 27888484 - 27888638
Alignment:
Q  97 ggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaataaatcttgtgcc 196  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||  | ||||||||| ||||| |||||||||| |    
T  27888484 ggccctcgaaaccaataaaaactaaacatcaaa-ccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagtagaaacaaatcttgtgtc 27888582  T
Q  197 aaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 252  Q
    ||||| ||  |||||  |||||||||||||||| ||| |||||||||||| |||||    
T  27888583 aaacctttaaaaaacctctccaaaataaccatcgaacctaccaaaaactcatgtaa 27888638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 6705281 - 6705379
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||    
T  6705281 ctacaaacaaaccaaaaacaccctccactgagggccctcgaaaccaataaaaactaaacacc-aaaccaagaagtcatcaccaaaaaccaaagtctaaac 6705379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 243
Target Start/End: Original strand, 40899904 - 40900081
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||  ||| ||||||| |||| || |||||||||||||||||| |||| |||||||| ||||||||||||| ||| |||||||    
T  40899904 ctacaaacaaaccaaaaacatcctccactgagggccctcgagaccaataaaaactaaacatcaaa-ccaagaagccatctccaaaaaccaaattctaaac 40900002  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 243  Q
      |   ||| ||| ||||| |||||||||||||||||||   |||||  |||||||||| |||| |||| |||||||||    
T  40900003 gtctatgcattagtagaaacaaatcttgtgccaaaccgtaaaaaaacctctccaaaatatccatgaaacctaccaaaaa 40900081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 33544077 - 33544163
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaa 151  Q
    ||||||||||||||||||||| ||| ||||||| |||   ||||||||||||||||||||||||| |||  ||||||||||| ||||    
T  33544077 ctacaaacaaaccaaaaacaccctccactgagggcccccaaaaccaataaaaactaaacaccaaagccacaaagtcatctcccaaaa 33544163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 33544179 - 33544267
Alignment:
Q  213 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcacgtgtaaa 301  Q
    ||||||||||||||||||| | |||||||||| |||| |  | ||  |||||| |||| ||||||| | |||||||||| || ||||||    
T  33544179 cctccaaaataaccatcaaccctaccaaaaacccgtgcagccgcaccttgcttatcttctgcagttcaacgcaattaagaacatgtaaa 33544267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 69 - 327
Target Start/End: Original strand, 12155919 - 12156177
Alignment:
Q  69 caaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactccc 168  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  12155919 caaacaaaccaaaaacaccctctactgaggcccctgaaaccaataaaaattaaacaccaaaatcaagaagtcatctccaaaaactaaagtctaaacaccc 12156018  T
Q  169 gcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctc 268  Q
    ||||||||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||  |||||||||    
T  12156019 gcgcaatagcagaaacaaatcttgtgtcaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcaccttgcttctc 12156118  T
Q  269 ttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaatcaccacctaaaaaa 327  Q
    ||  |||||||||||||||||||||| | ||||||||| ||||||||||||||| ||||    
T  12156119 ttcagcagttgagcgcaattaagcacatttaaacaccccaaaaatcaccacctagaaaa 12156177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 68 - 294
Target Start/End: Complemental strand, 40600355 - 40600128
Alignment:
Q  68 acaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactc 166  Q
    ||||||||||||||||||| ||| || |||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||||  ||||| | ||| |    
T  40600355 acaaacaaaccaaaaacaccctccaccgagggcccctgaaaccaataaaaactaaacaccagaaccaaaaagtcatctccaaaaatcaaagtatgaacgc 40600256  T
Q  167 ccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttc 266  Q
    |   ||||||||| ||| || |||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||   ||  |||||||    
T  40600255 ctaagcaatagcaaaaacaagtcttgtgccaaaccgttgcaaaacccgtccaaaataaccatcaaacctaccaaaaactcgtataactgcactttgcttc 40600156  T
Q  267 tcttatgcagttgagcgcaattaagcac 294  Q
    |||| |||||||||||||| ||||||||    
T  40600155 tcttctgcagttgagcgcagttaagcac 40600128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 66 - 294
Target Start/End: Complemental strand, 42269278 - 42269049
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgag-gcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||| | |||| ||||   ||||||||||||||| ||||||  |||||| ||||||||||||||||| ||| |||||||    
T  42269278 ctacaaacaaaccaaaaacaccctccattgagagccccccaaaccaataaaaactgaacaccgtaaccaaaaagtcatctccaaaaaccaaattctaaac 42269179  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgct 264  Q
     || | ||||||| ||||| || ||||||||||||| |||||||||| | ||||||||||||||||| | ||||||||||||| |||| | ||  |||||    
T  42269178 gcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaacccatccaaaataaccatcaatcctaccaaaaactcgggtaaccgcactttgct 42269079  T
Q  265 tctcttatgcagttgagcgcaattaagcac 294  Q
    |||||| |||||||||||| | ||||||||    
T  42269078 tctcttctgcagttgagcgtagttaagcac 42269049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 66 - 282
Target Start/End: Original strand, 11470504 - 11470724
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactga-ggccc--ttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaa 162  Q
    ||||||||||||||||||||| ||| ||  | |||||  ||||||||||||||||| ||||| ||||||||  || ||||||| |||||| ||| |||||    
T  11470504 ctacaaacaaaccaaaaacaccctccaccaatggcccacttgaaaccaataaaaacaaaacatcaaaaccataaaatcatctcaaaaaaccaaaatctaa 11470603  T
Q  163 actcccgcgcaatagca-gaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaatt 261  Q
    |||||||| ||||| || |||| ||||||||||||||||||||||||||| ||| ||||||| | ||||||| |||||||||||||||||| |||| |||    
T  11470604 actcccgcacaatatcaagaaacaaatcttgtgccaaaccgttgcaaaaccccttcaaaatagctatcaaacctaccaaaaactcgtgtaaccacacatt 11470703  T
Q  262 gcttctcttatgcagttgagc 282  Q
    | ||||||| |||| ||||||    
T  11470704 gtttctcttttgcatttgagc 11470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 26331885 - 26331699
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaact 165  Q
    |||||||| || ||||||||| | | || |||||||| ||||||||||||||||| |||||||| | |  ||||||||||||||||| |||||||||||     
T  26331885 ctacaaacgaatcaaaaacacccaccaccgaggccctcgaaaccaataaaaactagacaccaaaccaataaagtcatctccaaaaaccaaagtctaaacg 26331786  T
Q  166 cccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 252  Q
     | | ||||||||| ||| ||||||||| | ||| ||||| |||||  ||| ||||||| |||||||| |||||||||||| |||||    
T  26331785 tctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaaataatcatcaaacctaccaaaaactcatgtaa 26331699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 24867550 - 24867387
Alignment:
Q  70 aaacaaaccaaaaacacact-ctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactccc 168  Q
    ||||||||||||||||| || |||    |||||| ||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||| |      
T  24867550 aaacaaaccaaaaacaccctcctatgcgggccctcgaaaccaataaaaactaaacgtc-aaacaaagaagtcatctccaaaaaccaaagtctaaacgcat 24867452  T
Q  169 gcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaac 233  Q
    ||||||||||| ||| |||||||||||||| |||||| ||| |  ||||||||||||||||||||    
T  24867451 gcgcaatagcataaacaaatcttgtgccaatccgttgaaaatcctctccaaaataaccatcaaac 24867387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 243
Target Start/End: Complemental strand, 26331543 - 26331367
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaact 165  Q
    |||||||| || ||||||||  | | || |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||||     
T  26331543 ctacaaacgaatcaaaaacatccaccaccgaggccctcgaaaccaataaaaactagacaccaaa-ccaataagtcatctccaaaaaccaaagtctaaacg 26331445  T
Q  166 cccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 243  Q
     | | ||||||||| ||| ||||||||| | ||| ||||| |||||  ||| ||||||| |||||||| |||||||||    
T  26331444 tctgtgcaatagcataaacaaatcttgtacgaaatcgttgaaaaacatctctaaaataatcatcaaacctaccaaaaa 26331367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 40680647 - 40680744
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||    
T  40680647 ctacaaacaaaccaaaaacaccctccactgagggccctcgaaaccaataaaaactaaacacc-aaaccaag-agtcatcaccaaaaaccaaagtctaaac 40680744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 30248309 - 30248408
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggccctt-gaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||| ||| ||| |||  ||||||||||||||||||||||||||||||  ||||||||||| ||||  ||| |||||||    
T  30248309 ctacaaacaaaccaaaaacaccctccactaagggcctccgaaaccaataaaaactaaacaccaaaaccataaagtcatctcccaaaaacaaactctaaac 30248408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 34574528 - 34574451
Alignment:
Q  213 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaa 290  Q
    ||||||||||||||||||||| ||||||||| ||||| || | ||  ||||||||||| | |||||||||||||||||    
T  34574528 cctccaaaataaccatcaaacctaccaaaaaatcgtgcaaccgcaccttgcttctcttctacagttgagcgcaattaa 34574451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 42221130 - 42221190
Alignment:
Q  104 gaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||    
T  42221130 gaaaccaataaaaactaaacaccaaaaccacaaagtcatctcccaaaaccaaagtataaac 42221190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 23247200 - 23247102
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||  ||| || |||| || | ||||||||||||||||  |||||||||||  || |||||||| ||||| ||||| |||||    
T  23247200 ctacaaacaaaccaaaaacatcctccaccgagggccctaaaaccaataaaaactattcaccaaaaccataaaatcatctcccaaaacaaaagtttaaac 23247102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 30248411 - 30248493
Alignment:
Q  213 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcacg 295  Q
    |||| ||||||||| |||||| ||||||||| ||||| || |  |  ||||||||||| ||||||||||||||||||||||||    
T  30248411 cctctaaaataaccttcaaacctaccaaaaaatcgtgcaaccgtaccttgcttctcttctgcagttgagcgcaattaagcacg 30248493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 42221193 - 42221274
Alignment:
Q  213 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcac 294  Q
    ||||||||||||| ||||||| ||||||||||| ||| || | ||  ||||||||| | ||||||||| ||| |||||||||    
T  42221193 cctccaaaataactatcaaacctaccaaaaacttgtgcaaccgcaccttgcttctcatctgcagttgaacgccattaagcac 42221274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 34574606 - 34574554
Alignment:
Q  70 aaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaa 122  Q
    ||||||||||||||||  ||| ||||||| || ||||||||||||||||||||    
T  34574606 aaacaaaccaaaaacaacctccactgagggccctgaaaccaataaaaactaaa 34574554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 16376786 - 16376756
Alignment:
Q  104 gaaaccaataaaaactaaacaccaaaaccaa 134  Q
    |||||||||||||||||||||||||||||||    
T  16376786 gaaaccaataaaaactaaacaccaaaaccaa 16376756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 69 - 320
Target Start/End: Complemental strand, 14351674 - 14351424
Alignment:
Q  69 caaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactccc 168  Q
    |||| ||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  14351674 caaataaatcaaaaacaccctctactgaggcccttgaaaccaa-aaaaattaaacaccaaaatcaagaagtcatctccaaaaactaaagtctaaacaccc 14351576  T
Q  169 gcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctc 268  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||    
T  14351575 gcgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcacattgcttctc 14351476  T
Q  269 ttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaatcaccacc 320  Q
    ||  |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  14351475 ttcagcagttgagcgcaattaagcacatgtaaacaccccaaaaatcaccacc 14351424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 66 - 242
Target Start/End: Complemental strand, 2077895 - 2077718
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||  ||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  2077895 ctacaaacaaaccaaaaacacccttcactaagggcccctgaaaccaataaaaactaaacaccaaaaccaaaaagtcatctccaaaaaccaaagtctaaac 2077796  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaa 242  Q
      | | ||||||||| ||| || |||||||| ||||||||||||||| | |||||||||| |||||||| ||||||||    
T  2077795 gtctgagcaatagcataaacaagtcttgtgcaaaaccgttgcaaaacccatccaaaataatcatcaaacctaccaaaa 2077718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 66 - 301
Target Start/End: Original strand, 10494473 - 10494709
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcc-cttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||||||||||||||||| || ||| ||| ||| | |  ||||||||||||||||||||| ||||||| | ||||||||||||||||  |||||||||||    
T  10494473 ctacaaacaaaccaaaaataccctccactaagggctcccgaaaccaataaaaactaaacaacaaaacccaaaagtcatctccaaaaatcaaagtctaaac 10494572  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgct 264  Q
     ||   ||||||||||||| ||||||||||||||||| ||||||||| |||  |||||||||||||||| |||||||||  ||||||| | ||  ||  |    
T  10494573 gcctttgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctataaaataaccatcaaacctaccaaaaatccgtgtaaccgcactttctt 10494672  T
Q  265 tctcttatgcagttgagcgcaattaagcacgtgtaaa 301  Q
    |||||| |||||||||||| | |||||||| ||||||    
T  10494673 tctcttctgcagttgagcgtagttaagcacatgtaaa 10494709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 27787207 - 27787029
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||||| |||| ||||||||| ||| ||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||    
T  27787207 ctacaagcaaatcaaaaacaccctccactgagggccctcgaaaccaataaaaactaaacaccaaa-ccaagaagtcatctccaaaaaccaaagtccaaac 27787109  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 244  Q
      | ||||||||||||||| |||||||  |||||||| ||  |||||  |||||||||||||||||||| ||||||||||    
T  27787108 gtctgcgcaatagcagaaacaaatcttaagccaaaccattaaaaaacctctccaaaataaccatcaaacctaccaaaaac 27787029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 29099215 - 29099391
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||| |||||||||||||||| ||| ||||||| |||| |||||||||| | ||||||||||  | |||||||||||||||||||||| |||||||||||    
T  29099215 ctacgaacaaaccaaaaacaccctccactgagggccctcgaaaccaatagagactaaacaccgca-ccaagaagtcatctccaaaaaccaaagtctaaac 29099313  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaa 242  Q
        ||||||||||| ||| |||| |||||||| | ||||| |||||  |||||||||||||||||||||||||||||    
T  29099314 gtttgcgcaatagcataaacaaattttgtgccatatcgttgaaaaacctctccaaaataaccatcaaacttaccaaaa 29099391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 104 - 243
Target Start/End: Original strand, 11814323 - 11814461
Alignment:
Q  104 gaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaataaatcttgtgccaaaccgt 203  Q
    |||||||||||||| |||| |||||| | || |||| ||||||||||||  |||||||||| |  |||||||||||||||||||||||||||| ||| ||    
T  11814323 gaaaccaataaaaattaaataccaaa-ctaaaaagtgatctccaaaaacctaagtctaaacgcttgcgcaatagcagaaataaatcttgtgcctaactgt 11814421  T
Q  204 tgcaaaactcctccaaaataaccatcaaacttaccaaaaa 243  Q
    |||||||| |||||||| |||||||||||| || ||||||    
T  11814422 tgcaaaacccctccaaagtaaccatcaaacctagcaaaaa 11814461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 15495649 - 15495747
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||| ||||||||| ||| ||||||| |||| |||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  15495649 ctacaaacaaatcaaaaacaccctccactgagggccctcgaaagcaataaaaactaaacaccaaa-ccaagaagtcatcaccaaaaaccaaagtctaaac 15495747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 252
Target Start/End: Original strand, 25537390 - 25537572
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggc-ccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||||||||||||||||||||  || || ||||  ||| ||||| |||| | ||||||||||||| ||||||| ||||||  |||| | |||||||||||    
T  25537390 ctacaaacaaaccaaaaacaccttccacggagggtcctcgaaac-aatagagactaaacaccaaa-ccaagaaatcatctaaaaaatc-aaagtctaaac 25537486  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 252  Q
     ||  || ||||||||||| |||||||||| || ||||||| |||||  ||||  |||||||||||||| |||||||||||| |||||    
T  25537487 gcctacgaaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctcc--aataaccatcaaacctaccaaaaactcatgtaa 25537572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 26842343 - 26842258
Alignment:
Q  159 ctaaactcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 244  Q
    |||||| || ||||||||| ||||| |||||||||| || ||||||| |||||  ||||||| |||||||||||| ||||||||||    
T  26842343 ctaaacacctgcgcaataggagaaacaaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaac 26842258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 26842396 - 26842335
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactga-ggcccttgaaaccaataaaaactaaacacc 126  Q
    ||||||||||||||||||||| |||||| || |||||| |||||||||| | ||||||||||    
T  26842396 ctacaaacaaaccaaaaacaccctctacagagggccctcgaaaccaatacagactaaacacc 26842335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 68 - 327
Target Start/End: Original strand, 52635323 - 52635581
Alignment:
Q  68 acaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcc 167  Q
    ||||||||| ||||||||| ||||||||||||||   ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  |    
T  52635323 acaaacaaatcaaaaacaccctctactgaggccccaaaaagcaataaaaactaaacaccaaaactaagaagtcatttccaaaaactaaagtctaaacatc 52635422  T
Q  168 cgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttct 267  Q
    ||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  52635423 cgctcaatagcagaaacaaatcttgtgccaaatcgttgcaaaa-tcctccaaaataaccatcaaacctaccaaaaactcgtgtaatcacacattgcttct 52635521  T
Q  268 cttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaatcaccacctaaaaaa 327  Q
    ||| ||||| |||| |||||||| ||| |||||||| |||||||||||||||||| ||||    
T  52635522 cttctgcaggtgagtgcaattaaacacatgtaaacaaccaaaaaatcaccacctagaaaa 52635581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 55728328 - 55728443
Alignment:
Q  68 acaaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcc 167  Q
    ||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55728328 acaaataaacaaaaaacaccctctactgaggcccctgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaacacc 55728427  T
Q  168 cgcgcaatagcagaaa 183  Q
    ||||||||||||||||    
T  55728428 cgcgcaatagcagaaa 55728443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 45872810 - 45872979
Alignment:
Q  74 aaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgca 173  Q
    |||||||||| || | | ||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||| ||||||||||| |  |||||    
T  45872810 aaaccaaaaatactcaccactgaggccctcgaaaccaataaaaactagacaccaaacccat-aagtcatctccaaaaaccaaagtctaaacgcatgcgca 45872908  T
Q  174 atagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 244  Q
    |||||||||| ||||||||| | |||||||||||||||  |||||||||||||| ||||| ||||||||||    
T  45872909 atagcagaaacaaatcttgtacgaaaccgttgcaaaacgtctccaaaataaccaccaaacctaccaaaaac 45872979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 42678067 - 42677881
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||||| | ||||| | |||| ||| |||||||||| |||||| |||| |||||||||||||||  ||||| |||||||||||    
T  42678067 ctacaaacaaaccaaaaacacacaccactgatgaccctcgaagccaataaaaattaaacatcaaa-ccaagaagtcatctctcaaaaccaaagtctaaac 42677969  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 252  Q
     || || ||||| || ||| ||||||||| |||||| |||| |||||  || |||||||||||| |||| ||||| |||||| |||||    
T  42677968 gcctgcacaataacataaaaaaatcttgtaccaaactgttgaaaaacctcttcaaaataaccatgaaacctaccacaaactcatgtaa 42677881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 213 - 327
Target Start/End: Original strand, 55728449 - 55728562
Alignment:
Q  213 cctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgcttctcttatgcagttgagcgcaattaagcacgtgtaaacacccaaaaaa 312  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||  |||||| |||| ||||||||||||||||||| ||| ||||||||||| |||||    
T  55728449 cctccaaaataaccatcaaacctaccaaaa-ctcgtgtaatcgcactttgcttttcttctgcagttgagcgcaattaaacacatgtaaacacccgaaaaa 55728547  T
Q  313 tcaccacctaaaaaa 327  Q
    |||||||||| ||||    
T  55728548 tcaccacctagaaaa 55728562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 12130295 - 12130392
Alignment:
Q  67 tacaaacaaaccaaaaacacactctactgag-gcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  12130295 tacaaacaaaccaaaaacactctccactgagagccctcgaaaccaataaaaactaaacaccaaa-ccaataagtcatctccaaaaaccaaagtctaaac 12130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 14440879 - 14440973
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtct 160  Q
    ||||||||||||||||||||| ||| |  |||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  14440879 ctacaaacaaaccaaaaacaccctccatggagggccctcgaaaccaataaaaactaaacacc-aaaccaagaagtcatcttcaaaaaccaaagtct 14440973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 7971710 - 7971680
Alignment:
Q  104 gaaaccaataaaaactaaacaccaaaaccaa 134  Q
    |||||||||||||||||||||||||||||||    
T  7971710 gaaaccaataaaaactaaacaccaaaaccaa 7971680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 67 - 294
Target Start/End: Original strand, 24717683 - 24717911
Alignment:
Q  67 tacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaact 165  Q
    |||||||||||||||||||| ||||||||||| |||   ||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||     
T  24717683 tacaaacaaaccaaaaacaccctctactgagggcccaccaaaccaataaaaactaaacaccataaccaaaaagtcatctccaaaaaccaaagtctaaacg 24717782  T
Q  166 cccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgctt 265  Q
    || | ||||||| ||||| || ||||||||||||| |||||||||| | ||||||||||||||||| | |||||||||  |  |||| | ||  ||||||    
T  24717783 cctgagcaatagtagaaacaagtcttgtgccaaacagttgcaaaacccatccaaaataaccatcaatcctaccaaaaaaccaggtaaccgcactttgctt 24717882  T
Q  266 ctcttatgcagttgagcgcaattaagcac 294  Q
    ||||| |||||||||||||| ||||||||    
T  24717883 ctcttttgcagttgagcgcagttaagcac 24717911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 301
Target Start/End: Complemental strand, 43048165 - 43047929
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||||||||||| |||  |||||||||||||||||||||| | ||| || ||||||||||||||||| ||||||||||     
T  43048165 ctacaaacaaaccaaaaacaccctctactgagggcccccgaaaccaataaaaactaaacactagaacaaaaaagtcatctccaaaaaccaaagtctaaat 43048066  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgct 264  Q
     | || ||||||||| ||| ||||||||||  ||||||||||||||  | ||||||||||||||||||| |||||||||   |||||| | ||  ||| |    
T  43048065 gcacgagcaatagcataaacaaatcttgtgtaaaaccgttgcaaaatccatccaaaataaccatcaaacctaccaaaaatctgtgtaaccgcactttgtt 43047966  T
Q  265 tctcttatgcagttgagcgcaattaagcacgtgtaaa 301  Q
    |||||| |||||||||||||| ||||||||| |||||    
T  43047965 tctcttctgcagttgagcgcagttaagcacgagtaaa 43047929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 32978896 - 32979074
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgag-gcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||||| ||||  |||||||| ||| |||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||    
T  32978896 ctacaagcaaataaaaaacaccctccactgagcgcccttgaaatcaataaaaactaaacactaaa-ccaagaagtcatctccaaaaaccaaagtccaaac 32978994  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 244  Q
     || |||||||  || ||| |||||||||||||||| |||  |||||  ||||||||||||||||||||  |||||||||    
T  32978995 gcctgcgcaatgacataaacaaatcttgtgccaaactgttaaaaaacctctccaaaataaccatcaaacccaccaaaaac 32979074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 21591002 - 21590826
Alignment:
Q  67 tacaaacaaaccaaaaacacactctactgag-gcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaact 165  Q
    |||||||||||||||||||| ||| || ||  ||||| |||||||||||||| ||||||||||| | |||||||||||||||||||  ||| |||||||     
T  21591002 tacaaacaaaccaaaaacaccctccaccgaaagccctcgaaaccaataaaaattaaacaccaaatc-aagaagtcatctccaaaaaacaaattctaaacg 21590904  T
Q  166 cccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 243  Q
       | ||||||||||||| ||||||||||||||||||| | ||||   |||||||||||||| ||||| |||||||||    
T  21590903 tttgtgcaatagcagaaacaaatcttgtgccaaaccgtagaaaaatctctccaaaataaccaacaaacctaccaaaaa 21590826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 26711907 - 26711981
Alignment:
Q  171 gcaatagcagaaataaatctt-gtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaac 244  Q
    |||||||| |||| ||||||| |||||||||||||| ||||  |||| |||||||||||||||| ||||||||||    
T  26711907 gcaatagcggaaacaaatcttagtgccaaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaac 26711981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 7437183 - 7437223
Alignment:
Q  104 gaaaccaataaaaactaaacaccaaaaccaagaagtcatct 144  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  7437183 gaaaccaataaaaactaaacaccaaaaccacaaagtcatct 7437223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 34293850 - 34293802
Alignment:
Q  195 ccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 243  Q
    ||||||||||  |||||  |||||||||||||||||||| |||||||||    
T  34293850 ccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaa 34293802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 52984775 - 52984633
Alignment:
Q  69 caaacaaaccaaaaacacactct--actgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactc 166  Q
    |||||||||||||||||| ||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  52984775 caaacaaaccaaaaacaccctctctactgaggcccctgaaaccattaaaaactaaacaccaaaaccaagaagtcatctgcaaaaactaaagtctaaacac 52984676  T
Q  167 ccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaa 210  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  52984675 ccgcgcaatagcagaaacaaatcttgtgccaaa-cgttgcaaaa 52984633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 66 - 246
Target Start/End: Complemental strand, 46743353 - 46743173
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||||| ||||||||||||||  || ||||||| |||| ||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||| ||||    
T  46743353 ctacaagcaaaccaaaaacaccatccactgagggccctcgaaaccaataaaaactaaacatcaaa-ccaagaagtcatctctaaaaaccaaagtccaaac 46743255  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactc 246  Q
     |||||||||||||||||| ||||||||||||||||| ||  |||||   ||||||||||||||||||| ||||||||||||    
T  46743254 gcccgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaacctatccaaaataaccatcaaacctaccaaaaactc 46743173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 290
Target Start/End: Original strand, 31698872 - 31699097
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||  ||| ||| |||   ||| |||||||||| | |  ||| |||||| |||| |||||||||||| ||||||||||     
T  31698872 ctacaaacaaaccaaaaacacccttcactaaggaccccccaaatcaataaaaacaatatgccataaccaaaaagtaatctccaaaaaccaaagtctaaat 31698971  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgct 264  Q
     ||   |||||| || ||| || ||||||| ||||| |||||||||| | |||||||||||||| || | |||||||||| ||||||| | ||   ||||    
T  31698972 gcctaagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgct 31699071  T
Q  265 tctcttatgcagttgagcgcaattaa 290  Q
    |||||| |||||||||||||| ||||    
T  31699072 tctcttctgcagttgagcgcagttaa 31699097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 3460902 - 3460827
Alignment:
Q  69 caaacaaaccaaaaacacactctactgaggcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatct 144  Q
    |||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  3460902 caaacaaaccaaaaacaccctccacggaggccctcgaaaccaataaaaactaaacaccaaaaccacaaagtcatct 3460827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 52991727 - 52991649
Alignment:
Q  104 gaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaa 183  Q
    |||||||||| | ||||||||||||| |||||||||||||||||||||  ||||||||||| |||||||||||| |||||    
T  52991727 gaaaccaatagagactaaacaccaaa-ccaagaagtcatctccaaaaatcaaagtctaaacgcccgcgcaatagaagaaa 52991649  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 31625661 - 31625725
Alignment:
Q  147 aaaaactaaagtctaaactcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaac 211  Q
    |||||||||||||||||| ||||| || ||||||||| ||||||||||||||| | |||||||||    
T  31625661 aaaaactaaagtctaaacacccgcacagtagcagaaacaaatcttgtgccaaatcattgcaaaac 31625725  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 52984634 - 52984592
Alignment:
Q  285 aattaagcacgtgtaaacacccaaaaaatcaccacctaaaaaa 327  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  52984634 aattaagcacatgtaaacaccaaaaaaatcaccacctaaaaaa 52984592  T

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Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 66 - 294
Target Start/End: Original strand, 5514956 - 5515185
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||| ||||||||||||| ||| ||||||| |||   ||||||||||||| |||||| |  |||||| ||||||||||||||||| ||| ||||||     
T  5514956 ctacaaataaaccaaaaacaccctccactgagggccccccaaaccaataaaaattaaacatcgtaaccaaaaagtcatctccaaaaaccaaattctaaat 5515055  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgct 264  Q
     || | ||||||| ||||| || ||||||||||||| |||||||||  | ||||||||||||||||| | |||||||||| || |||| | ||  |||||    
T  5515056 gcctgagcaatagtagaaacaagtcttgtgccaaactgttgcaaaatccatccaaaataaccatcaatcctaccaaaaacccgggtaaccgcactttgct 5515155  T
Q  265 tctcttatgcagttgagcgcaattaagcac 294  Q
    |||||| |||||||||||||| ||||||||    
T  5515156 tctcttctgcagttgagcgcagttaagcac 5515185  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 244
Target Start/End: Complemental strand, 3763424 - 3763285
Alignment:
Q  105 aaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaataaatcttgtgccaaaccgtt 204  Q
    |||||||||||||||||||| |  |||||| ||||||||||||||||  ||||| ||||| || | ||||||||||||| || |||||||||||||| ||    
T  3763424 aaaccaataaaaactaaacatcttaaccaaaaagtcatctccaaaaatcaaagtttaaacacctgagcaatagcagaaacaagtcttgtgccaaaccatt 3763325  T
Q  205 gcaaaactcctccaaaataaccatcaaacttaccaaaaac 244  Q
    ||||||||| |||||||||| |||||| | ||||||||||    
T  3763324 gcaaaactcatccaaaataatcatcaatcctaccaaaaac 3763285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 15050504 - 15050320
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggc-ccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||  || ||||  ||| |||||||||| | ||||||||||||| ||||||| ||||||  |||||  |||||||||||    
T  15050504 ctacaaacaaaccaaaaacacccttcacggagggtcctcgaaaccaatagagactaaacaccaaa-ccaagaaatcatctaaaaaaatcaaagtctaaac 15050406  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaa 252  Q
     ||  |||||||||||||| |||||||||| || ||||||| |||||  ||||  |||||||||||||| |||||||||||| |||||    
T  15050405 gcctacgcaatagcagaaacaaatcttgtgtcataccgttgaaaaacctctcc--aataaccatcaaacctaccaaaaactcatgtaa 15050320  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 243
Target Start/End: Original strand, 10181740 - 10181917
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgagg-cccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    |||||| |||||||||||||| ||| || |||| ||||  |||||||||||||||||||  |||| ||||||||||||||||||||| ||||| | ||||    
T  10181740 ctacaagcaaaccaaaaacaccctccaccgagggccctcaaaaccaataaaaactaaacttcaaa-ccaagaagtcatctccaaaaattaaagaccaaac 10181838  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaa 243  Q
      | | | ||||||| ||| ||||| ||||||||||||||  |||||  |||||||||| ||||||||| |||||||||    
T  10181839 gactgggaaatagcataaacaaatcatgtgccaaaccgttaaaaaacctctccaaaatagccatcaaacctaccaaaaa 10181917  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 39580478 - 39580354
Alignment:
Q  105 aaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaataaatcttgtgccaaaccgtt 204  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||  | || |||||||| ||| |||||||||| |||||||||    
T  39580478 aaaccaatataaactaaacactaaa-ccaagaagtcatctccaaaaaccaaagtctaaacgtctgcacaatagcataaacaaatcttgtgtcaaaccgtt 39580380  T
Q  205 gcaaaactcctccaaaataaccatca 230  Q
    | ||||    ||||||||||||||||    
T  39580379 gaaaaatctatccaaaataaccatca 39580354  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 25142693 - 25142736
Alignment:
Q  79 aaaaacacactctactgaggcccttgaaaccaataaaaactaaa 122  Q
    |||||||  ||| |||||||||||||||||||||||||||||||    
T  25142693 aaaaacaacctccactgaggcccttgaaaccaataaaaactaaa 25142736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 294
Target Start/End: Complemental strand, 2880 - 2651
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggcccttg-aaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||| ||||||| ||| ||| ||||||    ||| ||||||||||||||||| | |||||| || |||||||||||| | |||||||||||    
T  2880 ctacaaacaaacctaaaacaccctccactaaggcccccccaaatcaataaaaactaaacactataaccaaaaattcatctccaaaacccaaagtctaaac 2781  T
Q  165 tcccgcgcaatagcagaaataaatcttgtgccaaaccgttgcaaaactcctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacaaattgct 264  Q
     || | ||||||||||||| || |||||||||||||||||||||| | | || ||||||| |||||| | |||||||||||| ||||| | ||  |||||    
T  2780 gcctgagcaatagcagaaacaagtcttgtgccaaaccgttgcaaatcccatctaaaataatcatcaatcctaccaaaaactcatgtaaccgcactttgct 2681  T
Q  265 tctcttatgcagttgagcgcaattaagcac 294  Q
    |||||| ||||||| |||||  ||||||||    
T  2680 tctcttctgcagttcagcgcggttaagcac 2651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 2830 - 2963
Alignment:
Q  74 aaaccaaaaacacactctactgag-gcccttgaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactc--ccgc 170  Q
    |||| |||||||| ||||||| || ||||| ||||| |||||||| ||||||||| | |||| || |||||||||||||| ||||||||||| |  |||     
T  2830 aaacaaaaaacaccctctactaagagccctcgaaactaataaaaattaaacaccata-ccaaaaattcatctccaaaaaccaaagtctaaacacgcccgt 2928  T
Q  171 gcaatagcagaaataaatcttgtgccaaaccgttg 205  Q
    ||||||||||||| |||||||||||||||| ||||    
T  2929 gcaatagcagaaacaaatcttgtgccaaactgttg 2963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 2571 - 2670
Alignment:
Q  66 ctacaaacaaaccaaaaacacactctactgaggccctt-gaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaac 164  Q
    ||||||||||||||||||||| ||| | ||||| |||| |||| |||||||| ||||||| ||||||||  ||||||||||| ||||  |||||||||||    
T  2571 ctacaaacaaaccaaaaacaccctccattgagggccttcgaaatcaataaaatctaaacatcaaaaccacaaagtcatctcccaaaatcaaagtctaaac 2670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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