View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_low_18 (Length: 385)
Name: NF0548_low_18
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 38822772 - 38823135
Alignment:
| Q |
10 |
gcatagggagacatgataaaagtaaatggtgaaagaggaagagaagaaggtgagtgaaaatggaaggtttttgtggaggaaaaagtgtgcatttgggagt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38822772 |
gcatagggagacatgataaaagtaaatggtgaaagaggaagagaagaaggtgagtgaaaatggaaggtttttatggaggaaaaagtgtgcatttgggagt |
38822871 |
T |
|
| Q |
110 |
gagaatgggaagtaaaagagaaggagaatagtgatggaattatggaaagttcagaaagttttggaatcgccattccaactcgtaatcgacagactctcaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38822872 |
gagaatgggaagtaaaagagaaggagaatagtgatggaattatggaaagttcagaaagttttggaatcgccattccaactcgtaatcgacagactctcaa |
38822971 |
T |
|
| Q |
210 |
cattgcttcttctgctttgaatccacttaacacgcagacaacacagaaatgaaaaccatgtatatatacacacacaccacagcctcaaannnnnnnnnnn |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38822972 |
cattgcttcttctgctttgaatccacttaacacgcagacaacacagaaatgaaaaccatgtatatatacacacacaccacaacctcaaatttttttaatt |
38823071 |
T |
|
| Q |
310 |
nnnnnnngacaaaacaacctcaaaattaatgttttcagctattttggaaataaaatactcccta |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38823072 |
tttttttgacaaaacaacctcaaaattaatgttttcagctattttggaaataaaatactcccta |
38823135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 38817184 - 38817379
Alignment:
| Q |
29 |
aagtaaatggtgaaagaggaagagaagaaggtgagtgaaaatggaaggtttttgtggaggaaaaagtgtgcatttgggagtgagaatgggaagtaaaaga |
128 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||||||||| |||| || ||||||||||||| |||| ||| |||||||| |||| |||||| |
|
|
| T |
38817184 |
aagtaaagggtgaaagaggaagagaaggag---agtgaaaatggaagggttttttgtaggaaaaagtgtggattttggaatgagaatgtgaaggaaaaga |
38817280 |
T |
|
| Q |
129 |
gaaggagaatagtgatggaattatggaaagttcagaaagttttggaatcgccattccaactcgtaatcgacagactctcaacattgcttcttctgcttt |
227 |
Q |
| |
|
||| ||||| | ||| ||||| |||||||| ||| ||||||||||||| | |||||| || ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38817281 |
gaaagagaagattgaaggaatagtggaaagtgaagagagttttggaatcggtaatccaacgcgaaattgacaagctctcaacattgcttcttctgcttt |
38817379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1592 times since January 2019
Visitors: 3672