View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_19 (Length: 376)
Name: NF0548_low_19
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 6289799 - 6289642
Alignment:
| Q |
74 |
atgcatatcaaatttcatacgtaccttgagttcgtagcgcctattaaagaaaaggcagatcccaaagtgtttgaagagcatatccttatcatcatagggc |
173 |
Q |
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| T |
6289799 |
atgcacatcaaatttcatacgtaccttgagttcgtagcgcctattaaagaaaaggcagatcccaaagtgtttgaagagcatatccttatcatcatagggc |
6289700 |
T |
|
| Q |
174 |
aaccttggaacaatgtcattgcaataaacaaacctacaataggttatacgattttcct |
231 |
Q |
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| T |
6289699 |
aaccttggaacaatgtcattgcaataaacaaacctgcaataggttatacgattttcct |
6289642 |
T |
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