View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_21 (Length: 362)
Name: NF0548_low_21
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 1350726 - 1350494
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
191 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350726 |
cagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
1350627 |
T |
|
| Q |
192 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttata |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1350626 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttata |
1350527 |
T |
|
| Q |
292 |
aggtattcaacttctttcgccaattgttctctg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
1350526 |
aggtattcaacttctttcgccaattgttctctg |
1350494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 1384380 - 1384148
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
191 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384380 |
cagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
1384281 |
T |
|
| Q |
192 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttata |
291 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1384280 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttata |
1384181 |
T |
|
| Q |
292 |
aggtattcaacttctttcgccaattgttctctg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
1384180 |
aggtattcaacttctttcgccaattgttctctg |
1384148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 1390485 - 1390253
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
191 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390485 |
cagtaacgtccgtcataatatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
1390386 |
T |
|
| Q |
192 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttata |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1390385 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttata |
1390286 |
T |
|
| Q |
292 |
aggtattcaacttctttcgccaattgttctctg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
1390285 |
aggtattcaacttctttcgccaattgttctctg |
1390253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 1394731 - 1394499
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
191 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1394731 |
cagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatttaa |
1394632 |
T |
|
| Q |
192 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttata |
291 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1394631 |
gtttaaaactatatatatgttcattgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttata |
1394532 |
T |
|
| Q |
292 |
aggtattcaacttctttcgccaattgttctctg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
1394531 |
aggtattcaacttctttcgccaattgttctctg |
1394499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 1358632 - 1358400
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccgattaaccatctaa |
191 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1358632 |
cagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagtagattaaccatgacaaaccaattaaccatctaa |
1358533 |
T |
|
| Q |
192 |
gttcaaaactatatatatgttcgttgaaaaggcattgaaaataaattaaaactagacctcagtctcgaattccaagcaagcaacccatcccttccttata |
291 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1358532 |
attcaaaactatatatatgttcattgaaaaggcattgaaaataaattaaaactagacctcggtctcgaattccaagcaagcaacccatcccttccttata |
1358433 |
T |
|
| Q |
292 |
aggtattcaacttctttcgccaattgttctctg |
324 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
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| T |
1358432 |
aggtattcaacttctttggccaattgttctctg |
1358400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 324
Target Start/End: Complemental strand, 1373867 - 1373787
Alignment:
| Q |
244 |
tagacctcagtctcgaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
324 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1373867 |
tagacctcggtctcaaattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttctctg |
1373787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 1374184 - 1374117
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
159 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1374184 |
cagtaacgtccgtcatagtatcctggtgaactgtggttctcacggtacacaaatcctttctgcaagta |
1374117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 7007297 - 7007237
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttct |
152 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7007297 |
cagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
7007237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 7010375 - 7010315
Alignment:
| Q |
92 |
cagtaacgtccgtcgtagtatcctggtgaactgtggttctcacggtacacaaatcctttct |
152 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7010375 |
cagtaacgtccatcatagtatcctggtgaactgtggttctcacggtagacaaatcctttct |
7010315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 7009868 - 7009807
Alignment:
| Q |
259 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattgttc |
320 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || ||||||||||| |
|
|
| T |
7009868 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattgttc |
7009807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 7006774 - 7006716
Alignment:
| Q |
259 |
aattccaagcaagcaacccatcccttccttataaggtattcaacttctttcgccaattg |
317 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||| ||||| || |||||||| |
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|
| T |
7006774 |
aattccaaacaaggaacccatcccttcctgataaggtattctacttccttagccaattg |
7006716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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