View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_23 (Length: 340)
Name: NF0548_low_23
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 42516502 - 42516827
Alignment:
| Q |
15 |
aaggtagtttcgacactggcattgagacttgtcttgcaatgaaaatgagtgtcaaagagggtgtttgatatttcttgttgctcaattattctgacattcc |
114 |
Q |
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| T |
42516502 |
aaggtagtttcgacactggcattgagacttgtcttgcaatgaaaatgagtgtcaaagagggtgtttgttatttcttgttgctcgattattctgacattcc |
42516601 |
T |
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| Q |
115 |
tcacccttaacctgtaaaggagcaatcactattccataaatcagcctctctattattgcaaataattaatcacaataatttgtatatcaatcatttttat |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
42516602 |
tcacccttgacctgtaaaggagcaatcactattccataaatcagcctctctattattgcaaataattaatcacaataatttgtatatcaatcatttattt |
42516701 |
T |
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| Q |
215 |
tagttgattcatagaatatgcttgccatgatttgtaataagttgttattatgtgttaccgtacatgacatgattgagctacactgattagaaccgttctg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42516702 |
tagttgattcatagaatatgcttgccatgatttgtaataagttgttattatgtgttaccgtacatgacatgattgagctacactgattagaaccgttctg |
42516801 |
T |
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| Q |
315 |
attttcttgttcaactctattttctt |
340 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42516802 |
attttcttgttcaactctattttctt |
42516827 |
T |
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