View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_low_24 (Length: 339)
Name: NF0548_low_24
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_24 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6263747 - 6264019
Alignment:
| Q |
1 |
gaaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaag |
100 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
6263747 |
gaaggcaactgcctctcaaaaaacgattccagccacggacaattgtacaacacgagagaattaagattggtgaacaaatgtagtgcaaaaggaaaggaag |
6263846 |
T |
|
| Q |
101 |
aagagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6263847 |
aagagtgccaacctgttatagttaaagtgcgaagggaattacagctacacatattcaaagaggaccattctagatttggaccaaagaagtcttcaacttc |
6263946 |
T |
|
| Q |
201 |
caattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
|| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
6263947 |
cagttcttcaagaaaggcactgctaactagaattttctctagggtggtttcaatgacatgagttccacaaagg |
6264019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6243382 - 6243654
Alignment:
| Q |
1 |
gaaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaag |
100 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6243382 |
gaaggcaactgcctcccgaaaaatgattccagcaatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaaggcaaggagg |
6243481 |
T |
|
| Q |
101 |
aagagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttc |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6243482 |
aagagtgccaacttgttatggttaaagtgcgaagagaattacagctacgcatatccaaagaggaccattctagattttgaccaaagaagtcttcaacttc |
6243581 |
T |
|
| Q |
201 |
caattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
||||||||||||||||| | || ||| |||||||||||||| | || |||||||| |||||||||||||||| |
|
|
| T |
6243582 |
caattcttcaagaaaggtactgttaaatagaattttctctagggcggattcaatgatctgagttccacaaagg |
6243654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 273
Target Start/End: Original strand, 6140352 - 6140623
Alignment:
| Q |
2 |
aaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaaga |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
6140352 |
aaggcaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaattaagattgttgaataagtatagtgcaaaaggcaaggaaga |
6140451 |
T |
|
| Q |
102 |
agagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttcc |
201 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||| | |||| || |||||||||||||||||||| |
|
|
| T |
6140452 |
agagtgccaacctgttatagttaaagtgcgaagggaataacagctacacatatacaaagaggaccattccatattttgaccaaagaagtcttcaacttcc |
6140551 |
T |
|
| Q |
202 |
aattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
|| ||||||||||||||| | ||| |||| ||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
6140552 |
aactcttcaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagttccacaaagg |
6140623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 2 - 273
Target Start/End: Original strand, 6257268 - 6257539
Alignment:
| Q |
2 |
aaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaaga |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6257268 |
aaggcaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaattaagattggtgaacaagtgtagtgcaaaaggcaaggaaga |
6257367 |
T |
|
| Q |
102 |
agagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttcc |
201 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||| ||||||||||| || ||||| |||||||| | |||| || |||||||||||||||||||| |
|
|
| T |
6257368 |
agagtgccaacctgttatagttagagtgcaaagggaataacagctacacacatgcaaagaggaccattccatatttcgaccaaagaagtcttcaacttcc |
6257467 |
T |
|
| Q |
202 |
aattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
|| ||||||||||||||| | ||| |||| ||||||||| |||| ||||||||| ||||| ||||||||| |
|
|
| T |
6257468 |
aactcttcaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagtgccacaaagg |
6257539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 2 - 273
Target Start/End: Original strand, 6166963 - 6167234
Alignment:
| Q |
2 |
aaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaaga |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
6166963 |
aaggcaactgcctcccaaaaaacgattccagcaatggacaatcgtacaacacgagagaattaagattgttgaatacgtgtagtgcaaaaggcaaggaaga |
6167062 |
T |
|
| Q |
102 |
agagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttcc |
201 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||| ||||||| | |||| || |||||||||||||||||||| |
|
|
| T |
6167063 |
agagtgccaacctgttatagttaaagtgcgaagggaataacagctacacatatacaaagagaaccattccatatttcgaccaaagaagtcttcaacttcc |
6167162 |
T |
|
| Q |
202 |
aattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
|| |||| |||||||||| | ||| |||| ||||||||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
6167163 |
aactctttaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagttccacaaagg |
6167234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 2 - 273
Target Start/End: Original strand, 6898154 - 6898425
Alignment:
| Q |
2 |
aaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaaga |
101 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||| || |
|
|
| T |
6898154 |
aaggcaactgcctccagcaaaacgattccagccatggactatcgtacaacaccagagaatgaagattggtgaacaagtgcagtgcaaatggcaaggagga |
6898253 |
T |
|
| Q |
102 |
agagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttcc |
201 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6898254 |
agagtgccaacctgttatagttagagtgcaaagtgaattacagctacacatatccaaagaggaccattctagattttgaccaaagaagtcttcaacttct |
6898353 |
T |
|
| Q |
202 |
aattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
|| |||||||||||||| |||||| |||||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
6898354 |
aacacttcaagaaaggcactgctaaatagaattttctctagggcggattcaatgacctgagttccacaaagg |
6898425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 6593317 - 6593045
Alignment:
| Q |
1 |
gaaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaag |
100 |
Q |
| |
|
||||| |||||||| || ||||||| | |||||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
6593317 |
gaaggcaactgcctgcctgaaaacgaccctagccatggacaatcgtacaaaacgagagaattaagattggtgagcaagtgtagagcaaaaggcaaggagg |
6593218 |
T |
|
| Q |
101 |
aagagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
6593217 |
aagagtgccaacctgttatagttaaagtgcgaagagaattacagctacacatgtccaaagaggaccattctagatttgaatcaaagaagtcctcaacttc |
6593118 |
T |
|
| Q |
201 |
caattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
||| |||||||||||| || || ||| |||||||||||||| | || || |||||||||||||||||||||| |
|
|
| T |
6593117 |
caactcttcaagaaagacactgttaaatagaattttctctagggaggatttaatgacctgagttccacaaagg |
6593045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6880581 - 6880853
Alignment:
| Q |
1 |
gaaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaag |
100 |
Q |
| |
|
||||| |||||||||||| |||| || |||||||||||| | |||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
6880581 |
gaaggcaactgcctcccagaaaatgactccagccatggatagtcgtacaacatgagagaattaagattggtgaacaagtgcagtggaaaaggcaaggaag |
6880680 |
T |
|
| Q |
101 |
aagagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| ||||| ||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6880681 |
aagagtgccaacttgttatagttagagtgcgaagagaattgcagctgcacatgtccaaagaggaccattctagatttggaccaaagaagtcttcaacttc |
6880780 |
T |
|
| Q |
201 |
caattcttcaagaaaggcattgct-aacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
||| ||||||||||||||| | | ||||| ||||| |||||| || | || |||||||||||||||||||||| |
|
|
| T |
6880781 |
caactcttcaagaaaggcacagttcaacaa-aatttgctctagggttgattgaatgacctgagttccacaaagg |
6880853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6724043 - 6723802
Alignment:
| Q |
1 |
gaaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaag |
100 |
Q |
| |
|
|||||||||||||| || |||||||| |||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
6724043 |
gaaggtaactgcctgccgaaaaacgactccagcagtggacaatcgtacaaaacgagagaattaagattggtgagcaagtgtagagcaaaaggcaaggagg |
6723944 |
T |
|
| Q |
101 |
aagagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttc |
200 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6723943 |
aagagtgccaacctgttatagttagagtgcgaagagaattacagctacacatatccaaagaggaccattctagattatgatcaaagaagtcttcaacttc |
6723844 |
T |
|
| Q |
201 |
caattcttcaagaaaggcattgctaacaagaattttctctag |
242 |
Q |
| |
|
||| ||||| ||||||||| || ||| |||||||||||||| |
|
|
| T |
6723843 |
caactcttctagaaaggcactgttaaatagaattttctctag |
6723802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6915166 - 6915438
Alignment:
| Q |
1 |
gaaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaag |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||| ||||||| |||||| || || | |
|
|
| T |
6915166 |
gaaggcaactgcctcccaaaaaatgattccagccatggacactcatacaacgcgagagaatgaagattggtgaacaattgtagtgtaaaaggaaatgagg |
6915265 |
T |
|
| Q |
101 |
aagagtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6915266 |
aagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtcttcaacttc |
6915365 |
T |
|
| Q |
201 |
caattcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
|||||||||||||| |||| | ||| | ||||| |||||| | || | |||||||||||||||||||||| |
|
|
| T |
6915366 |
caattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaagg |
6915438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 6851238 - 6850970
Alignment:
| Q |
5 |
gtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaagaaga |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
6851238 |
gtaactgcctcccaaaaaacgattccagccatggacaatcgtacaaaacaagagaatcaagattgttgaacaattgtggtgcaaaaggcaaggaggaaga |
6851139 |
T |
|
| Q |
105 |
gtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttccaat |
204 |
Q |
| |
|
||||||| |||| |||||| |||| |||| |||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
6851138 |
atgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatccaaagaggaccattctagatttggaccaaagaagtcttcaactttcaac |
6851039 |
T |
|
| Q |
205 |
tcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
||||||||||||||| | ||| | ||||| |||||| | || | ||||||||||||||| |||||| |
|
|
| T |
6851038 |
tcttcaagaaaggcacagttaaataaaatttgctctagggaggatggaatgacctgagttccgcaaagg |
6850970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 104 - 273
Target Start/End: Complemental strand, 13272414 - 13272245
Alignment:
| Q |
104 |
agtgccaacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttccaa |
203 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13272414 |
agtgccaacctgttatagttaaagtgcgaagggaattacaactacacatatccaaagaggaccattctagatttggaccaaagaagtcttcaacttccag |
13272315 |
T |
|
| Q |
204 |
ttcttcaagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacctgagttccacaaagg |
273 |
Q |
| |
|
|||||||||||||| | | ||||| |||||||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
13272314 |
ttcttcaagaaagggactactaactagaattttctctagggtgatttcaatgacatgagttccacaaagg |
13272245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 7748075 - 7748324
Alignment:
| Q |
9 |
ctgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaagaagagtgc |
108 |
Q |
| |
|
||||||||| ||||| |||| |||||||||| ||| ||||||| |||| ||| ||||||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
7748075 |
ctgcctcccggaaaacaattctagccatggactatcatacaacatgagaaaatgaagattggtgaacaagtgcagtgcaaaaggcaaataggaagagtgc |
7748174 |
T |
|
| Q |
109 |
caacttgttatagttaaagtgtgaagggaattacagctacacatatccaaagtcgaccattctagatttggagcaaagaagtcttcaacttccaattctt |
208 |
Q |
| |
|
|||| ||||||||||| | || |||| ||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||| | || |
|
|
| T |
7748175 |
caacctgttatagttagactgcgaagagaattacagctacacatatccgaagaggaccattctaaatttggaccaaagaagtcttcaacttccaactttt |
7748274 |
T |
|
| Q |
209 |
caagaaaggcattgctaacaagaattttctctagtgtggtttcaatgacc |
258 |
Q |
| |
|
||||||| || || ||| | |||||||||||| |||| |||||||||| |
|
|
| T |
7748275 |
caagaaaagcgctgttaaataaaattttctctagggtggattcaatgacc |
7748324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13275368 - 13275261
Alignment:
| Q |
1 |
gaaggtaactgcctcccaaaaaacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaag |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13275368 |
gaaggcaactgcctctaaaaaaacgattccagccacggacaattgtacaacacgagagaattaagattggtgaacaaatgtagtgcaaaaggcaaggaag |
13275269 |
T |
|
| Q |
101 |
aagagtgc |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
13275268 |
aagagtgc |
13275261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 6942024 - 6942113
Alignment:
| Q |
21 |
aaacgattccagccatggacaatcgtaca-acacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaagaagagtgcca |
110 |
Q |
| |
|
||||||||||||| |||||||||||||| | || ||| ||| || ||||||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
6942024 |
aaacgattccagctctggacaatcgtacagatac-agataatgaagtttggtgaacaagtgtagtgaaaaaggcaaggaggaggagtgcca |
6942113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 8570889 - 8570804
Alignment:
| Q |
25 |
gattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaagaagagtgcca |
110 |
Q |
| |
|
||||||||| |||||||||| ||||| | ||| ||| |||||||||||||||||| | | |||||||||||| || |||||||| |
|
|
| T |
8570889 |
gattccagctgtggacaatcggacaactctagataatgaagattggtgaacaagtgtggggtaaaaggcaaggaggaggagtgcca |
8570804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 5262040 - 5262100
Alignment:
| Q |
38 |
gacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaagga |
98 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
5262040 |
gacaatcgtacaaatctagagaatgaagattggtgaacaagttcagtgcaaaaggcaagga |
5262100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 9707 - 9630
Alignment:
| Q |
21 |
aaacgattccagccatggacaatcgtaca-acacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaagga |
98 |
Q |
| |
|
||||||||||||| |||||||||||||| | || ||| |||| ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
9707 |
aaacgattccagctctggacaatcgtacagatac-agataattaagattggtgaacaagtgtagttccaaaggcaagga |
9630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 1738 - 1653
Alignment:
| Q |
22 |
aacgattccagccatggacaatcgtacaacacgagagaatttagattggtgaacaagtgtagtgcaaaaggcaaggaagaagagtg |
107 |
Q |
| |
|
||||||||||| ||||||||||| | ||| | ||| ||| |||| |||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
1738 |
aacgattccagttatggacaatcggaaaactctagataatgatgatttgtgaacaagtgtagcgtaaaaggcaaggaggaagagtg |
1653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 6575234 - 6575193
Alignment:
| Q |
54 |
gagagaatttagattggtgaacaagtgtagtgcaaaaggcaa |
95 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
6575234 |
gagagaatcaagattggtgaacaagtgtagtgaaaaaggcaa |
6575193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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