View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_25 (Length: 331)

Name: NF0548_low_25
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_25
NF0548_low_25
[»] chr5 (18 HSPs)
chr5 (163-217)||(29870769-29870824)
chr5 (163-217)||(30481915-30481970)
chr5 (103-164)||(29851735-29851796)
chr5 (103-159)||(29870646-29870702)
chr5 (163-210)||(30243846-30243894)
chr5 (163-217)||(30340004-30340059)
chr5 (167-217)||(30434409-30434460)
chr5 (66-100)||(30714756-30714790)
chr5 (103-159)||(30058757-30058813)
chr5 (163-222)||(30058880-30058940)
chr5 (103-151)||(30481792-30481840)
chr5 (163-217)||(30748226-30748281)
chr5 (68-97)||(29870580-29870609)
chr5 (67-100)||(30678954-30678987)
chr5 (67-95)||(30244072-30244100)
chr5 (67-95)||(30434201-30434229)
chr5 (168-217)||(30678707-30678758)
chr5 (163-222)||(30714546-30714606)
[»] chr4 (2 HSPs)
chr4 (98-159)||(20298317-20298378)
chr4 (68-97)||(20298405-20298434)
[»] chr7 (1 HSPs)
chr7 (167-210)||(26705848-26705892)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 29870769 - 29870824
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttctta 217  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  29870769 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttctta 29870824  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 30481915 - 30481970
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttctta 217  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  30481915 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttctta 30481970  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 29851735 - 29851796
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaatatataa 164  Q
    |||||| ||||||||||| ||  |||||||||| |||||||||||||||||| |||||||||    
T  29851735 atgtaccctggatctcttcctacggaatgggttacaaagaagtcaacaatgagaatatataa 29851796  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 29870646 - 29870702
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 159  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||| ||||||| ||||    
T  29870646 atgtactctggatctcttcctgcggaatgggttccaaagatgtcgacaatgagaata 29870702  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 30243894 - 30243846
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctg 210  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  30243894 aattgatttttgcgatggtgattgaggcagataagggtaaacgtctctg 30243846  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 30340059 - 30340004
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttctta 217  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  30340059 aattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttctta 30340004  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 30434409 - 30434460
Alignment:
Q  167 gatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttctta 217  Q
    |||||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  30434409 gatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttctta 30434460  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 30714790 - 30714756
Alignment:
Q  66 ttatgatgaagaaaattacctgaattagaacaatt 100  Q
    |||||||||||||||||||||||||||||||||||    
T  30714790 ttatgatgaagaaaattacctgaattagaacaatt 30714756  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 30058757 - 30058813
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 159  Q
    |||||||||||||||||| |||  |||||||||||||||| ||| ||||||| ||||    
T  30058757 atgtactctggatctcttcctgcagaatgggttccaaagatgtcgacaatgagaata 30058813  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 30058880 - 30058940
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttcttataact 222  Q
    ||||||||||||||||||| | || ||||||| |||||||||||||||| |||||| ||||    
T  30058880 aattgatttttgcgatggttaatgaggcagataagggtaaacgtctctgcttcttaaaact 30058940  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 30481792 - 30481840
Alignment:
Q  103 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaa 151  Q
    ||||| |||||||||||| ||| ||||||||||||||| ||||||||||    
T  30481792 atgtagtctggatctcttcctgcggaatgggttccaaataagtcaacaa 30481840  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 30748226 - 30748281
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttctta 217  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||||||||| ||||||    
T  30748226 aattgaattttgcgattgtgattgaggcagataagggtaaacgtctctgcttctta 30748281  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 29870580 - 29870609
Alignment:
Q  68 atgatgaagaaaattacctgaattagaaca 97  Q
    ||||||||||||||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaaca 29870609  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 30678987 - 30678954
Alignment:
Q  67 tatgatgaagaaaattacctgaattagaacaatt 100  Q
    ||||||||||||||||||| ||||||||||||||    
T  30678987 tatgatgaagaaaattaccagaattagaacaatt 30678954  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 95
Target Start/End: Complemental strand, 30244100 - 30244072
Alignment:
Q  67 tatgatgaagaaaattacctgaattagaa 95  Q
    |||||||||||||||||||||||||||||    
T  30244100 tatgatgaagaaaattacctgaattagaa 30244072  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 30434201 - 30434229
Alignment:
Q  67 tatgatgaagaaaattacctgaattagaa 95  Q
    |||||||||||||||||||||||||||||    
T  30434201 tatgatgaagaaaattacctgaattagaa 30434229  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 30678758 - 30678707
Alignment:
Q  168 atttttgcgatggtgattgtggcagat--agggtaaacgtctctgtttctta 217  Q
    ||||||||||||||||||  |||||||  |||||||||||||||| ||||||    
T  30678758 atttttgcgatggtgattaaggcagataaagggtaaacgtctctgcttctta 30678707  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 30714606 - 30714546
Alignment:
Q  163 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact 222  Q
    |||||||||||| |||||  | || |||||||| ||||||||||||||| |||||||||||    
T  30714606 aattgatttttgtgatggctaatgaggcagataagggtaaacgtctctgcttcttataact 30714546  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 20298378 - 20298317
Alignment:
Q  98 attttatgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 159  Q
    |||| |||||||||||||||||||||   ||| |||||||||||||||||||| ||| ||||    
T  20298378 atttcatgtactctggatctctttctacagaacgggttccaaagaagtcaacattgagaata 20298317  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Complemental strand, 20298434 - 20298405
Alignment:
Q  68 atgatgaagaaaattacctgaattagaaca 97  Q
    ||||||||||||||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaaca 20298405  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 26705848 - 26705892
Alignment:
Q  167 gatttttgcgatggtgattgtggcagat-agggtaaacgtctctg 210  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||    
T  26705848 gatttttgtgatggtgattgaggcagataagggtaaacgtctctg 26705892  T

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