View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_low_27 (Length: 324)
Name: NF0548_low_27
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 1699959 - 1700209
Alignment:
| Q |
1 |
atggcatgtatttcacactcttggtttttataaccttggcctgttcattatatacatcaagaagagatatataaaattaaaattggatgacacaatttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1699959 |
atggcatgtatttcacactcttggtttttataaccttggcctgttcattatatacatcaagaagagatatataaaattaaaattggatgacacaatttta |
1700058 |
T |
|
| Q |
101 |
caatatacaaatttaaattatcatggaattaattgagacttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacaaagaacacc |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1700059 |
caatatacaaatttaaatgatcatggaattaattgagacttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacatagaacacc |
1700158 |
T |
|
| Q |
201 |
aacaattaacgatcnnnnnnnagtgccatgaagtgccaacattgttattag |
251 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1700159 |
aacaattaacgatctttttttagtgccatgaagtgccaacattgttattag |
1700209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 248
Target Start/End: Original strand, 1684567 - 1684677
Alignment:
| Q |
138 |
acttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacaaagaacaccaacaattaacgatcnnnnnnnagtgccatgaagtgcc |
237 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | |||||||||||||||| || |||||||||||| || | ||||||||||| | || |
|
|
| T |
1684567 |
acttaccatgattgtaagaggagaaatatacatcaatatgttgaagacatcacaaacaataccaacaattaaagacctgccggtagtgccatgaaatacc |
1684666 |
T |
|
| Q |
238 |
aacattgttat |
248 |
Q |
| |
|
||||||||||| |
|
|
| T |
1684667 |
aacattgttat |
1684677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1674270 - 1674322
Alignment:
| Q |
1 |
atggcatgtatttcacactcttggtttttataaccttggcctgttcattatat |
53 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
1674270 |
atggcatgtatttcacactctttgtttttataacattttcctgttcattatat |
1674322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1694867 - 1694919
Alignment:
| Q |
1 |
atggcatgtatttcacactcttggtttttataaccttggcctgttcattatat |
53 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
1694867 |
atggcatgtatttcacactcttggttcttataaccgttgcctgttcatcatat |
1694919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 248
Target Start/End: Original strand, 1694990 - 1695100
Alignment:
| Q |
138 |
acttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacaaagaacaccaacaattaacgatcnnnnnnnagtgccatgaagtgcc |
237 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| | ||||||| |||||||| || ||||||||||| || | ||||||||| | |||| |
|
|
| T |
1694990 |
acttaccatgatcgtaagaggagaagcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgtaatgcc |
1695089 |
T |
|
| Q |
238 |
aacattgttat |
248 |
Q |
| |
|
||||||||||| |
|
|
| T |
1695090 |
aacattgttat |
1695100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 904 times since January 2019
Visitors: 3660