View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_28 (Length: 322)
Name: NF0548_low_28
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 4832644 - 4832447
Alignment:
| Q |
86 |
tcattgtggctgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaatggctgaataaatctcaagttgttttcaattaatgcgc |
185 |
Q |
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| T |
4832644 |
tcattgtggctgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaatggctgaataaatctcaagttgttttcaattaatacgc |
4832545 |
T |
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| Q |
186 |
caaagcaaggttagcatgcttgggttgaatgaatatccaagtctcacagcttagcttaacccaacacggagttagtgtcggaaa-cccagggatgtca |
282 |
Q |
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| T |
4832544 |
caaagcaaggttagcatgcttgggttgaatgaatatccaagtctcacagcttagcttaccccaactcggagttagtgtcggaaaccccagggatgtca |
4832447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 4831232 - 4831146
Alignment:
| Q |
96 |
tgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaat-ggctgaataaatctcaagttgttttcaattaat |
181 |
Q |
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| T |
4831232 |
tgggtgttctcttttgaagccctttgaaattgattggatcttgtgtgatcaatgggctgaataaatctcaagttattttcaattaat |
4831146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 4834020 - 4833936
Alignment:
| Q |
7 |
gagagaagaatgataggatattactaagtactccatgaagttttaataatgttaactcaatgtgcacgagccctttgattcattgtgg |
94 |
Q |
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| T |
4834020 |
gagaaaagaatgataggatattagtaagtactccatgaagttt---taatgttaactcaatgtacatgagccctttgattcattgtgg |
4833936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 4831703 - 4831667
Alignment:
| Q |
17 |
tgataggatattactaagtactccatgaagttttaat |
53 |
Q |
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| T |
4831703 |
tgataggatattactaagtactccatgaaattttaat |
4831667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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