View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_30 (Length: 311)
Name: NF0548_low_30
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 300
Target Start/End: Complemental strand, 40975465 - 40975195
Alignment:
| Q |
30 |
caatcttctgccacgtacaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtc |
129 |
Q |
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| T |
40975465 |
caatcttctgccacgtacaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtc |
40975366 |
T |
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| Q |
130 |
aataaatttccatattcagttacccaacctccaacctacacatgaattaatttggaaaatagaagtgaataaaattgtaaaccatactaattaaaataat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975365 |
aataaatttccatattcagttacccaacctccaacctacacatgaattaatttggaaattagaagtgaataaaattgtaaaccatactaattaaaataat |
40975266 |
T |
|
| Q |
230 |
ttttcatgtagaaaatggttaaattgttactaatacacacactcgtgcgcacacaaacacacctggtctct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975265 |
ttttcatgtagaaaatggttaaattgttactaatacacacactcgtgcgcacacaaacacacctggtctct |
40975195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 40958788 - 40958909
Alignment:
| Q |
46 |
acaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatatt |
145 |
Q |
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|||||||| ||||||||||| ||||| |||||||||| |||| || || |||||||| ||||||||||| |||||||||||||| |||||| |||| | |
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| T |
40958788 |
acaaaggagctgaatagatgtaatgccctagaaggttgtccatatggcaccatgtgacccgctcctcttacagtggcgaaagtcaacaaattttcatact |
40958887 |
T |
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| Q |
146 |
cagttacccaacctccaaccta |
167 |
Q |
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||||||||||||||||| |||| |
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| T |
40958888 |
cagttacccaacctccagccta |
40958909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 30903528 - 30903646
Alignment:
| Q |
54 |
actgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatattcagttacc |
153 |
Q |
| |
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|||||| ||||||| |||| |||||||||| ||||| ||||| |||||| |||| || | |||||||||||||| || ||||||||||| || ||| || |
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| T |
30903528 |
actgaaaagatgcagtgctctagaaggttgtgcatacggtaccatgtgagctgcaccccgcacggtggcgaaagttaacaaatttccatactcggttgcc |
30903627 |
T |
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| Q |
154 |
caacctccaacctacacat |
172 |
Q |
| |
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||||||||||||||||||| |
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| T |
30903628 |
caacctccaacctacacat |
30903646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 9259980 - 9260108
Alignment:
| Q |
46 |
acaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatatt |
145 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||| ||||| ||||| || ||| ||||||| || ||| |||||| || |||||| |||| | |
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| T |
9259980 |
acaaaggaactgaatagatgcagtactctagaaggttgtgcatagggtaccatatgagctgctccctatatagtgatgaaagttaacaaattttcatact |
9260079 |
T |
|
| Q |
146 |
c--agttacccaacctccaacctacacat |
172 |
Q |
| |
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| || | ||||||||||||||||||||| |
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| T |
9260080 |
caaagatgcccaacctccaacctacacat |
9260108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 32446444 - 32446316
Alignment:
| Q |
46 |
acaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatatt |
145 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| | | ||| ||||| |||||| ||||||| | || ||||||||||| || ||||| |||| | |
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| T |
32446444 |
acaaaggaactgaatagatgcggtgctctagaaggtcgtgtatagggtaccatgtgagctgctccccatatagtggcgaaagttaacgaattttcatact |
32446345 |
T |
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| Q |
146 |
c--agttacccaacctccaacctacacat |
172 |
Q |
| |
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| || | ||||||||||||||||||||| |
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| T |
32446344 |
caaagatgcccaacctccaacctacacat |
32446316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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