View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_35 (Length: 292)

Name: NF0548_low_35
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_35
NF0548_low_35
[»] chr4 (12 HSPs)
chr4 (1-226)||(11160783-11161008)
chr4 (2-151)||(11192325-11192477)
chr4 (2-204)||(6947917-6948119)
chr4 (2-182)||(11179057-11179237)
chr4 (1-182)||(11174804-11174988)
chr4 (1-151)||(11928874-11929024)
chr4 (46-153)||(11932522-11932629)
chr4 (63-120)||(52791802-52791859)
chr4 (76-166)||(11166083-11166173)
chr4 (84-182)||(11182340-11182438)
chr4 (76-166)||(11189735-11189825)
chr4 (1-182)||(11211059-11211243)
[»] chr5 (2 HSPs)
chr5 (40-182)||(8992533-8992675)
chr5 (41-182)||(8983136-8983277)
[»] chr7 (6 HSPs)
chr7 (44-204)||(661945-662105)
chr7 (31-182)||(6778670-6778821)
chr7 (31-182)||(37480619-37480770)
chr7 (31-182)||(37476097-37476248)
chr7 (31-176)||(6774383-6774528)
chr7 (70-110)||(37581002-37581042)
[»] chr1 (1 HSPs)
chr1 (41-182)||(45071573-45071714)
[»] chr8 (4 HSPs)
chr8 (4-160)||(24817345-24817501)
chr8 (41-175)||(37362807-37362941)
chr8 (41-182)||(37365112-37365253)
chr8 (4-104)||(24406313-24406413)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11160783 - 11161008
Alignment:
Q  1 gatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11160783 gatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaggacgccggaggaga 11160882  T
Q  101 ttcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttgacgaatgattagagtctag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11160883 ttcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtagcgaaactcaatgggcttttgacgaatgattagagtctag 11160982  T
Q  201 ggttagggtttagcctctagcgttgt 226  Q
    ||||||||||||||||||||||||||    
T  11160983 ggttagggtttagcctctagcgttgt 11161008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 11192477 - 11192325
Alignment:
Q  2 atctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagat 101  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||  |||||||  ||||| |||||||||||    
T  11192477 atctcatctcggctgctaactatctaaacatcaaaagtctgttggatcttacatgcatgactgcagcagacaatatcaaggacaagacaccggaggagat 11192378  T
Q  102 tcgtaagactttcaacatt---attaatgattacactccggaggaagaggagg 151  Q
    ||| |||| ||||||||||   | | ||||||||||||| |||||||||||||    
T  11192377 tcgcaagattttcaacattaagaatgatgattacactcccgaggaagaggagg 11192325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 6948119 - 6947917
Alignment:
Q  2 atctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttaca-tgcaagactgtagcagacatgatcaagggtaagacgccggaggaga 100  Q
    ||||||||| |||||| | |||||| || ||||| |||||  |||||||| || || ||| || |||||||||||||||||| ||||| |||||||||||    
T  6948119 atctcatctgggctgctagctatctgaatatcaagagtctcttggatctttcaatgaaag-ctctagcagacatgatcaaggataagaagccggaggaga 6948021  T
Q  101 ttcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttgacgaatgattagagtctag 200  Q
    || |||||| |||||||||| | |||| ||||  |||  ||||||| |||||||| ||| | |||| ||||||  |||||||  | ||||||||||||||    
T  6948020 ttagtaagattttcaacattgtgaatgcttaccgtcccaaggaagatgaggaagttcgttgtgaaaatcaatgcacttttgaaaactgattagagtctag 6947921  T
Q  201 ggtt 204  Q
    ||||    
T  6947920 ggtt 6947917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 11179237 - 11179057
Alignment:
Q  2 atctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagat 101  Q
    |||||||| ||||||| |||||| |||||||||| || ||  |||||||||| |||| ||||  |   ||||  |||||||  ||||| || ||||||||    
T  11179237 atctcatcatggctgccaactatttaaacatcaagagcctattggatcttacctgcatgactacaatggacaacatcaaggacaagacaccagaggagat 11179138  T
Q  102 tcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
    ||| |||| |||||||||||  ||||||||||| || ||||||||||||||||| |||||||||| |   |||||||||||    
T  11179137 tcgcaagattttcaacattaagaatgattacaccccagaggaagaggaggaagttcgtcgcgaaaatagttgggcttttga 11179057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 11174804 - 11174988
Alignment:
Q  1 gatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaaggg---taagacgccggagg 97  Q
    ||||||||||||||||| |||||| | |||||||| |||||  |||||||||| || |||| ||| |||||||||||   ||    ||||||||| ||||    
T  11174804 gatctcatcttggctgctaactatttgaacatcaagagtcttttggatcttacttgtaagagtgtggcagacatgatgttggcggctaagacgccagagg 11174903  T
Q  98 agattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
     ||| ||| |||| ||||||||||  |||||||||| ||| ||||||||| || || | ||| |||||| |||||||||||||||    
T  11174904 cgatccgtgagacattcaacattaagaatgattacagtcctgaggaagagcagaaaattcgtagcgaaaatcaatgggcttttga 11174988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 11929024 - 11928874
Alignment:
Q  1 gatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggaga 100  Q
    ||||||||||  |||||||||| | |  ||||||||||| ||   |||||||| ||||||||||||||||||||||| || |  ||||| || ||| |||    
T  11929024 gatctcatctctgctgcaaactttttggacatcaaaagtttgtacgatcttacgtgcaagactgtagcagacatgatgaacgacaagacaccagagcaga 11928925  T
Q  101 ttcgtaagactttcaacattattaatgattacactccggaggaagaggagg 151  Q
    ||||| |||  ||||||||| | |||||||||| |||| ||||||||||||    
T  11928924 ttcgtgagatgttcaacattgtgaatgattacagtccgcaggaagaggagg 11928874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 11932629 - 11932522
Alignment:
Q  46 gatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaag 145  Q
    |||||||| ||||||||||||||||||||||| || || ||||| || ||| ||||||||  ||  ||||||||| | |||||||||| |||| ||||||    
T  11932629 gatcttacgtgcaagactgtagcagacatgatgaacggcaagacaccagagcagattcgtgcgatgttcaacattgtgaatgattacagtccgcaggaag 11932530  T
Q  146 aggaggaa 153  Q
    ||||||||    
T  11932529 aggaggaa 11932522  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 52791859 - 52791802
Alignment:
Q  63 tgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacatt 120  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||    
T  52791859 tgtagcaaacatgatcaagggtaagacgccggaggagatttgcaaggctttcaacatt 52791802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 11166173 - 11166083
Alignment:
Q  76 atcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaa 166  Q
    |||||||  ||||| || ||||||||||| |||| |||||||||||  |||||||||||  | | |||| |||||||||| ||||||||||    
T  11166173 atcaaggacaagacaccagaggagattcgcaagattttcaacattaagaatgattacacctccgcggaaaaggaggaagttcgtcgcgaaa 11166083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 11182340 - 11182438
Alignment:
Q  84 taagacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
    ||||||||| |||| ||| ||| |||  ||||||||||  |||||||||| ||| ||||||||| || || | ||| |||||| |||||||||||||||    
T  11182340 taagacgccagaggcgatccgtgagaagttcaacattaagaatgattacagtcccgaggaagagcagaaaattcgtagcgaaaatcaatgggcttttga 11182438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 11189825 - 11189735
Alignment:
Q  76 atcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaa 166  Q
    |||||||  ||||| |||||||||||| | |||| |||||||||||   |||| ||||| || |||||| |||||||||| ||||||||||    
T  11189825 atcaaggacaagacaccggaggagatttgcaagattttcaacattaaggatgagtacacccccgaggaaaaggaggaagttcgtcgcgaaa 11189735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 11211059 - 11211243
Alignment:
Q  1 gatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatca---agggtaagacgccggagg 97  Q
    |||||||| |||||||| |||||| |  || |||| | |||  |||||||||| ||||||||||| ||| |||||||     ||| ||||||||||||||    
T  11211059 gatctcatgttggctgctaactatttggacttcaagactcttttggatcttacttgcaagactgtggcaaacatgatgttggaggctaagacgccggagg 11211158  T
Q  98 agattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
      || |||||||  ||  ||||||  |   ||||||||||||||||||||||| || ||||| | |||| | |||||||||||||    
T  11211159 caatccgtaagaagttgcacattaagagcaattacactccggaggaagaggagaaaatccgtagtgaaaattaatgggcttttga 11211243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 8992533 - 8992675
Alignment:
Q  40 ctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccgg 139  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| ||||| || ||||||||||| ||||| || |||||||  ||||||| | | || |    
T  8992533 ctgctggatcttacatgccagactgtggcagacatgatcaaggggaagacacctgaggagattcgcaagacctttaacattaagaatgatttctcaccag 8992632  T
Q  140 aggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
    |||||||||||||||| ||| | ||||  |||||||| |||||    
T  8992633 aggaagaggaggaagttcgtagggaaaaccaatgggcatttga 8992675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 8983136 - 8983277
Alignment:
Q  41 tgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccgga 140  Q
    ||||||||||||| ||| | ||||| ||||||||||||||||| || || || |||||||| || ||||| |||||||| |  ||||| | | | || ||    
T  8983136 tgctggatcttacctgccaaactgttgcagacatgatcaagggaaaaacaccagaggagatccgcaagacattcaacatcaagaatgacttctcacctga 8983235  T
Q  141 ggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
    ||||||||||||||| ||| | ||||  |||||||| |||||    
T  8983236 ggaagaggaggaagttcgtagggaaaaccaatgggcatttga 8983277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 662105 - 661945
Alignment:
Q  44 tggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccggagga 143  Q
    |||||||| ||  ||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||| |||||||||||| |||| ||||  ||||||| |    
T  662105 tggatctttcaatcaagactctagcagacatgatcaaggataagaagccggaggatattggtaagattttcaacattataaatgcttaccgtccggagta 662006  T
Q  144 agaggaggaagtccgtcgcgaaactcaatgggcttttgacgaatgattagagtctagggtt 204  Q
    |||||| |||||  |||| |||| ||||||  |||||||  | | ||||||||||||||||    
T  662005 agaggatgaagtttgtcgtgaaaatcaatgcacttttgaaaactaattagagtctagggtt 661945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 6778670 - 6778821
Alignment:
Q  31 atcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgatt 130  Q
    ||||| ||||| ||||||||||||||| || |||| || ||||||||||| || ||||| |||||||| ||||| |||||||| || || |  |||||||    
T  6778670 atcaagagtctactggatcttacatgccagtctgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaatatcaagaatgatt 6778769  T
Q  131 acactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
     |||||||||||||||||| ||||| ||| | |||| ||||||||| |||||    
T  6778770 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggcatttga 6778821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 37480770 - 37480619
Alignment:
Q  31 atcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgatt 130  Q
    ||||| ||||| ||||||||||| ||| ||||||| || ||||||||||| || |||||||||||||| ||||| |||||||| || || |  |||||||    
T  37480770 atcaagagtctactggatcttacctgccagactgtggcggacatgatcaaagggaagacgccggaggaaattcgaaagacttttaatatcaagaatgatt 37480671  T
Q  131 acactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
     |||| ||||||||||||| ||| | ||| | |||| ||||||||| |||||    
T  37480670 tcacttcggaggaagaggaagaaattcgtagggaaaatcaatgggcatttga 37480619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 37476248 - 37476097
Alignment:
Q  31 atcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgatt 130  Q
    ||||| ||||| ||||||||||| ||| ||||||| || ||||||||||| || ||||| || ||||| ||||| |||||||| || || |  |||||||    
T  37476248 atcaagagtctactggatcttacctgccagactgtggcggacatgatcaaagggaagacaccagaggaaattcgaaagacttttaatatcaagaatgatt 37476149  T
Q  131 acactccggaggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
     |||||||||||||||||| ||||| ||  | |||| ||||||||| |||||    
T  37476148 tcactccggaggaagaggaagaagttcgcagggaaaatcaatgggcatttga 37476097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 6774383 - 6774528
Alignment:
Q  31 atcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgatt 130  Q
    ||||| |||||  |||||||||| ||| ||  ||| || ||||||||||| || ||||| |||||||| ||||| |||||||| || || |  |||||||    
T  6774383 atcaagagtctattggatcttacctgccagtatgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaatatcaagaatgatt 6774482  T
Q  131 acactccggaggaagaggaggaagtccgtcgcgaaactcaatgggc 176  Q
     |||||||||||||||||| ||||| ||| | |||| |||||||||    
T  6774483 tcactccggaggaagaggaagaagttcgtagggaaaatcaatgggc 6774528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 37581002 - 37581042
Alignment:
Q  70 gacatgatcaagggtaagacgccggaggagattcgtaagac 110  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  37581002 gacatgatcaaggggaagacgccggaggagattcgcaagac 37581042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 182
Target Start/End: Complemental strand, 45071714 - 45071573
Alignment:
Q  41 tgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccgga 140  Q
    ||||||||||||| ||| ||| ||| || ||||||||||| || ||||| |||||||| ||||| |||||||| ||||| |  ||||||| ||||||| |    
T  45071714 tgctggatcttacctgccagattgtggcggacatgatcaaagggaagacaccggaggaaattcgaaagacttttaacatcaagaatgatttcactccgaa 45071615  T
Q  141 ggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
    |||||| || ||||| ||  | |||| ||||||||| |||||    
T  45071614 ggaagaagaagaagttcgctgggaaaatcaatgggcatttga 45071573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 24817345 - 24817501
Alignment:
Q  4 ctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattc 103  Q
    |||| |||||||||||||||| | |||||||| |   ||   ||||||||||| |||||  ||||||| ||||| |||  |||| | || ||||||||||    
T  24817345 ctcaccttggctgcaaactatttgaacatcaagaacttgtatgatcttacatgtaagaccatagcagatatgatgaagaataagccaccagaggagattc 24817444  T
Q  104 gtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtc 160  Q
    |  |||||||||||||| | |||||||| |||||||||||||| | |||||| ||||    
T  24817445 gcgagactttcaacattgtgaatgattatactccggaggaagaagcggaagttcgtc 24817501  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 37362941 - 37362807
Alignment:
Q  41 tgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccgga 140  Q
    ||||||||||||| ||| ||||||| |   ||||||| || || ||||| |||||| | |||||  |||||||  |||| |  ||||||| |||||||||    
T  37362941 tgctggatcttacctgcgagactgtggtgaacatgattaaagggaagacaccggagcaaattcgagagacttttcacatcaagaatgatttcactccgga 37362842  T
Q  141 ggaagaggaggaagtccgtcgcgaaactcaatggg 175  Q
    ||||||||| ||||| ||| | |||| ||||||||    
T  37362841 ggaagaggaagaagttcgtagggaaaatcaatggg 37362807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 37365112 - 37365253
Alignment:
Q  41 tgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattcgtaagactttcaacattattaatgattacactccgga 140  Q
    ||||||||||||| ||| ||||||| ||  ||||||| || || ||||| |||||| | |||||  |||||||  |||| |  ||||||| |||||||||    
T  37365112 tgctggatcttacctgcgagactgtggcgaacatgattaaagggaagacaccggagcaaattcgagagacttttcacatcaagaatgatttcactccgga 37365211  T
Q  141 ggaagaggaggaagtccgtcgcgaaactcaatgggcttttga 182  Q
    |||| |||| ||||| ||| | ||||  |||||||| |||||    
T  37365212 ggaaaaggaagaagttcgtagggaaaaccaatgggcatttga 37365253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 24406413 - 24406313
Alignment:
Q  4 ctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgcaagactgtagcagacatgatcaagggtaagacgccggaggagattc 103  Q
    ||||||||||||||||||||  |  | ||||| || || ||||| ||||||||| ||  ||||||||| |  ||||||| |||||||  |||||||||||    
T  24406413 ctcatcttggctgcaaactacttggatatcaagagcctactggaacttacatgccaggatgtagcagaaactatcaaggataagacggtggaggagattc 24406314  T
Q  104 g 104  Q
    |    
T  24406313 g 24406313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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