View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_36 (Length: 287)
Name: NF0548_low_36
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 42517696 - 42517493
Alignment:
| Q |
27 |
ttaactattatgtaactacttgactattattttttacataaggttggtacgatgatttcgaatataaaagttaagaagtagagtgataaaaaggtatgcg |
126 |
Q |
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| T |
42517696 |
ttaactattatgtaactacttgactattattttttacataaggttggtacgatgatttcgaatataaaagttaagaagtagagtgataaaaaggtatgcg |
42517597 |
T |
|
| Q |
127 |
tttgatctcttccggctaacataacattaacatttatcattaaaaaatatacaacaattaaagtaaacgaaaataaaagacaatggacacgatcgatctt |
226 |
Q |
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| T |
42517596 |
tttgatctctaccggctaacataacattaacatttatcattaaaaaatatacaacaattaaagtaaacgaaaataaaagacaatggacacgatcgatctt |
42517497 |
T |
|
| Q |
227 |
gttc |
230 |
Q |
| |
|
|||| |
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| T |
42517496 |
gttc |
42517493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 42517244 - 42517202
Alignment:
| Q |
239 |
tggacacgatcgatctttgttaacgaagtacgacctatgatac |
281 |
Q |
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| T |
42517244 |
tggacacgatcgatctttgttaacgaagtacgaccaatgatac |
42517202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 45723305 - 45723337
Alignment:
| Q |
183 |
attaaagtaaacgaaaataaaagacaatggaca |
215 |
Q |
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| T |
45723305 |
attaaagtaaacgaaaataaaagataatggaca |
45723337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 43814335 - 43814378
Alignment:
| Q |
183 |
attaaagtaaacgaaaataaaagacaatggacacgatcgatctt |
226 |
Q |
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| T |
43814335 |
attaaagtaaacgaaagtaaaagacaatggacacaatcgatctt |
43814378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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