View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0548_low_37 (Length: 286)
Name: NF0548_low_37
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_37 |
 | |
|
| [»] scaffold0793 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 720240 - 720042
Alignment:
| Q |
1 |
gatgcatatgcaagagccagaggccacatgtttgagaactaatgtcatgaatgcctaaatgagaaagttaatatttggagtattaaattcaatnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
720240 |
gatgcatatgcaagagccagaggccacatgctagagaactaatgtcatgaatgcctaaatgagaaagttaatatttggagtattaaattcaat-aaaaaa |
720142 |
T |
|
| Q |
101 |
nnttggaactggttacgagtgtagtgatgcatgtgcaaaaacaaccctgannnnnnngggataatgttacacaactaattaaacatgaacatatatgtac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
720141 |
aattggaactggttacgagtgtagtgatgcatgtgcaaaaacaacactgatttttttgggataatgttacacaactgattaaacatgaacatatatgtac |
720042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 771213 - 771295
Alignment:
| Q |
1 |
gatgcatatgcaagagccagaggccacatgtttgagaactaatgtcatgaatgcctaaatgagaaagttaatatttggagtat |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
771213 |
gatgcatatgcaagagccagaggccacatgctagagaactaatgtcatgaatgcctaaatgagaaagttaatatttggagtat |
771295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 773578 - 773675
Alignment:
| Q |
103 |
ttggaactggttacgagtgtagtgatgcatgtgcaaaaacaaccctgannnnnnngggataatgttacacaactaattaaacatgaacatatatgtac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
773578 |
ttggaactggttacgagtgtagtgatgcatgtgcaaaaacagcactgatttttttgggataatgttacacaactaattaaacatgaacatatatgtac |
773675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 1611 - 1795
Alignment:
| Q |
15 |
agccagaggccacatgtttgagaactaatgtcatgaatgcctaaatgagaaagttaatatttggagtattaaattcaatnnnnnnnnnttggaactggtt |
114 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1611 |
agccagaggccacatgctagagaactaatgtcatgaatgcctaaatgagaaagttaatatttggagtattaaattcaataaaaaaaa-ttggaactggtt |
1709 |
T |
|
| Q |
115 |
acgagtgtagtgatgcatgtgcaaaaacaaccctgannnnnnngggataatgttacacaactaattaaacatgaacatatatgtac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1710 |
acgagtgtagtgatgcatgtgcaaaaacaacactgatttttttgggataatgttacacaactaattaaacatgaacatatatgtac |
1795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 421 times since January 2019
Visitors: 3650