View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_4 (Length: 520)
Name: NF0548_low_4
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 36 - 515
Target Start/End: Complemental strand, 32635173 - 32634698
Alignment:
| Q |
36 |
acaccgtgtcatccaccaatcgtctacgtgcactatatttggaataataaaataatagaatgcnnnnnnnnnnngaaagaaaaataatagaaagctttaa |
135 |
Q |
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| T |
32635173 |
acaccatgtcatccaccaatcgtctacgtgcactgtatttggaataataaaataatagaatgcattttttttt-gaaagaaaaataatagaaagttttaa |
32635075 |
T |
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| Q |
136 |
agtttcgttgaggtacgtagatcatgaataaataaaactgaaccacattagtgagacacacacaagacaagaaaggttaggctaaaaactaagtttannn |
235 |
Q |
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| T |
32635074 |
agtttcgttgaggtacgtagatcatgaataaataaaactgaaccacattagtgagacacacacaagacaagaaaggttaggctaaaaact--gtttattt |
32634977 |
T |
|
| Q |
236 |
nnnnnatagcaattatttattaattgagccatgaaatggtaatatactaatattatatgctatttaaacgtaaaaaa-ctttattataacgcaaaatcta |
334 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32634976 |
ttt--atagcaattatttattaattgagccatgaagtggtaatatactaatattatatgctatttaaacgtaaaaaaactttattataacgcaaaatcta |
32634879 |
T |
|
| Q |
335 |
agtcaaatccgtttgcaaatcacatgaaataatgcattattaaattgattttgcaaccagaattagcttttcttttatggtttgttggtgtttgacatga |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32634878 |
agtcaaatccgtttgcaaatcacatgaaataatgcattattaaattgattttgcaaccagaattagcttttcttttatggtttgttggtgtttgacatga |
32634779 |
T |
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| Q |
435 |
catcatggcattagaaaaagtttgaactaaccgtgatgtgattcaaaacaaactttagagtgacatttggtctgtgctgct |
515 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32634778 |
catcatggcattagaaaaagtttgaactaatcgtgatgtgattcaaaacaaactttagagtgacatttggtttgtgctgct |
32634698 |
T |
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