View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_43 (Length: 251)
Name: NF0548_low_43
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_43 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 47292827 - 47292605
Alignment:
| Q |
29 |
acttgatagacatcatctccatttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgt |
128 |
Q |
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| T |
47292827 |
acttgatagacatcatctccatttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagccaatttgaataaatattgt |
47292728 |
T |
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| Q |
129 |
cctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaacttctggaattacagaattg |
228 |
Q |
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| T |
47292727 |
cctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaacttctggaattacagaattg |
47292628 |
T |
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| Q |
229 |
agaccacctttaaacaaggaaac |
251 |
Q |
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| T |
47292627 |
agaccacctttaaataaggaaac |
47292605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 45862519 - 45862594
Alignment:
| Q |
87 |
tagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttc |
162 |
Q |
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| T |
45862519 |
tagaagaagagactttatccagccaatttgaatagatattatccagtaatgcagtcagcatctcacgatgatcttc |
45862594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 56209347 - 56209461
Alignment:
| Q |
48 |
catttatgaagttttcaatatctt-ctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatca |
146 |
Q |
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| T |
56209347 |
catttatgaaattgtcaatatctttctattttctttcctcttgcagaagagactttatcgagccaatttgaatagatattatccaacaatgcagtcagca |
56209446 |
T |
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| Q |
147 |
tttcactatgatctt |
161 |
Q |
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| T |
56209447 |
tctcacgatgttctt |
56209461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 45862404 - 45862444
Alignment:
| Q |
48 |
catttatgaagttttcaatatcttctcttttctttcttgta |
88 |
Q |
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| T |
45862404 |
catttatgaagttctcaacatcttctcttttctttcctgta |
45862444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 7962518 - 7962669
Alignment:
| Q |
48 |
catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcat |
147 |
Q |
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| T |
7962518 |
catttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaataaatactgtcctgcaatgcagtcgtcgt |
7962617 |
T |
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| Q |
148 |
ttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagt |
201 |
Q |
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| T |
7962618 |
ctcacgataatctttgatttgttgacctc--ctacccatctatatttaccaagt |
7962669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 35803176 - 35803256
Alignment:
| Q |
48 |
catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgt |
128 |
Q |
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| T |
35803176 |
catttatgaagttttgaacttcttctcttttcttccctctagaagaagagactttatccagccaatttgaatagatattgt |
35803256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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