View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_46 (Length: 250)

Name: NF0548_low_46
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_46
NF0548_low_46
[»] chr5 (12 HSPs)
chr5 (1-238)||(30058254-30058489)
chr5 (1-238)||(30714872-30715114)
chr5 (182-238)||(30398478-30398534)
chr5 (49-238)||(29870288-29870486)
chr5 (86-185)||(30398554-30398655)
chr5 (182-238)||(30679221-30679277)
chr5 (183-238)||(30433910-30433964)
chr5 (141-186)||(30679157-30679202)
chr5 (182-237)||(30481429-30481484)
chr5 (182-238)||(29851386-29851443)
chr5 (141-174)||(30433997-30434030)
chr5 (1-38)||(30679072-30679109)
[»] chr1 (1 HSPs)
chr1 (113-170)||(595872-595929)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30058489 - 30058254
Alignment:
Q  1 cctttgacacacaagggcggggtcgacaaataaagggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtccc 100  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30058489 cctttgacacacaagggtggggtcgacaaataaatggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtcc- 30058391  T
Q  101 cggtggtggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttttattggtcttttgt 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30058390 -ggtggtggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtacacaatagaaagtctgatcatcaaggtttttattggtcttttgt 30058292  T
Q  201 atttatttgctttagattgtttatttgaatgatatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30058291 atttatttgctttagattgtttatttgaatgatatatt 30058254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30714872 - 30715114
Alignment:
Q  1 cctttgacacacaagggcggggtcgacaaataaagggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtccc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30714872 cctttgacacacaagggtggggtcgacaaataaagggattaataggttcctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtcc- 30714970  T
Q  101 cggtggtggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttttattgg-------t 193  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  30714971 -ggtggtggtagaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttttattggtctttact 30715069  T
Q  194 cttttgtatttatttgctttagattgtttatttgaatgatatatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30715070 cttttgtatttatttgctttagattgtttatttgaatgatatatt 30715114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 30398534 - 30398478
Alignment:
Q  182 gtttttattggtcttttgtatttatttgctttagattgtttatttgaatgatatatt 238  Q
    |||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  30398534 gtttttgttggtcttttttatttatttgttttagattgtttatttgaatgatatatt 30398478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 29870486 - 29870288
Alignment:
Q  49 cctaatgatgaagatgacatcgttcggagtggaggatgtgacaatgagtccccggtggtggta--gaggttttcgcttttgatcattggggcgtgggtcg 146  Q
    ||||||||||||||  || || || ||||||||||| ||||||| ||||||  ||||||||||  |||| || || |||||||  |  |||||||||||     
T  29870486 cctaatgatgaagagaacgtcttttggagtggaggaggtgacaacgagtcc--ggtggtggtatcgaggattgcgattttgatagtgagggcgtgggtca 29870389  T
Q  147 gagctctgtgcacaatagaaagtctgatcatcaaggtttt---------tattggtcttttgtatttatttgctttagattgtttatttgaatgatatat 237  Q
    |||||  |||| || ||| || ||||||||||||||||||         |||||||||||| |||||||||| |||||||| ||| |||||||| |||||    
T  29870388 gagctgcgtgcccattagcaactctgatcatcaaggttttctccatttttattggtcttttttatttatttgttttagattctttctttgaatggtatat 29870289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 30398655 - 30398554
Alignment:
Q  86 gtgacaatgagtccccggtggtggta--gaggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtctgatcatcaaggt 183  Q
    ||||||||||||||| ||||| ||||  |||| || || ||||||  || ||||| |||||||||||||||||| || ||| ||||||||||||||||||    
T  30398655 gtgacaatgagtccctggtgggggtatcgaggattgcgattttgacaatcggggcatgggtcggagctctgtgcccattagcaagtctgatcatcaaggt 30398556  T
Q  184 tt 185  Q
    ||    
T  30398555 tt 30398554  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 30679221 - 30679277
Alignment:
Q  182 gtttttattggtcttttgtatttatttgctttagattgtttatttgaatgatatatt 238  Q
    |||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  30679221 gtttttgttggtcttttttatttatttgttttagactgtttatttgaatgatatatt 30679277  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 30433964 - 30433910
Alignment:
Q  183 tttttattggtcttttgtatttatttgctttagattgtttatttgaatgatatatt 238  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  30433964 tttttattggtctttt-tatttatttgctttatattgtttgtttgaatgatatatt 30433910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 30679157 - 30679202
Alignment:
Q  141 gggtcggagctctgtgcacaatagaaagtctgatcatcaaggtttt 186  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  30679157 gggtcggagctcagtgcacagtagaaagtctgatcatcaaggtttt 30679202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 30481484 - 30481429
Alignment:
Q  182 gtttttattggtcttttgtatttatttgctttagattgtttatttgaatgatatat 237  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||||| ||||||    
T  30481484 gtttttattggtcattcttatttatttgttttagattgtttatttgaataatatat 30481429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 29851443 - 29851386
Alignment:
Q  182 gtttttattggtcttttgt-atttatttgctttagattgtttatttgaatgatatatt 238  Q
    ||||||||||||||||| | |||| |||| ||| ||||||||||||||||||||||||    
T  29851443 gtttttattggtctttttttatttgtttgttttggattgtttatttgaatgatatatt 29851386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 30434030 - 30433997
Alignment:
Q  141 gggtcggagctctgtgcacaatagaaagtctgat 174  Q
    |||||||||||| |||||||||||||||||||||    
T  30434030 gggtcggagctcagtgcacaatagaaagtctgat 30433997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30679072 - 30679109
Alignment:
Q  1 cctttgacacacaagggcggggtcgacaaataaaggga 38  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  30679072 cctttgatacacaagggtggggtcgacaaataaaggga 30679109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 595872 - 595929
Alignment:
Q  113 aggttttcgcttttgatcattggggcgtgggtcggagctctgtgcacaatagaaagtc 170  Q
    |||||| |||||||||| || ||||||| ||||||||||| |||| || |||||||||    
T  595872 aggtttgcgcttttgataatcggggcgttggtcggagctccgtgcccattagaaagtc 595929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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