View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0548_low_48 (Length: 249)
Name: NF0548_low_48
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 28715987 - 28716162
Alignment:
| Q | 11 | agcataggaaagcagtgcaccaatccaatcaatccattatgccacagcacagcaaagtctggtctaagctatggaaattgaggactataccaaggcatgt | 110 | Q |
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| T | 28715987 | agcataggaaagcagtgcaccaatccaatcaatccattatgccacagcacagcaaagtctggtctaagctatggaaattggggactataccaaggcatgt | 28716086 | T |
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| Q | 111 | tcatgcgtatcctacatgattgaactccggttagattggctctttctaatcgaggtgttcagtgtattcctctttg | 186 | Q |
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| T | 28716087 | tcatgcgtatcctacatgattgaactccggttagattggctctttctaatcgaggtgttcggtgtattcctctttg | 28716162 | T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 10537792 - 10537749
Alignment:
| Q | 71 | ggtctaagctatggaaattgaggactataccaaggcatgttcat | 114 | Q |
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| T | 10537792 | ggtctaagctatggaaattgcggactataccaaggcatgttcat | 10537749 | T |
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