View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_5 (Length: 459)
Name: NF0548_low_5
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 52 - 434
Target Start/End: Original strand, 10313562 - 10313943
Alignment:
| Q |
52 |
cccaattcagtgcccatagcaaacccgaagctattgtgatatgtacttcacaacttggtgcaaaccattcagtgttggccaaaacaaaaacacctcagtc |
151 |
Q |
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| T |
10313562 |
cccaattcagtgcccatagcaaacccgaagctactgtgatatgtacttcacaacttggtgaaaaccattcagtgttggccaaaacaaaaacacctcagtc |
10313661 |
T |
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| Q |
152 |
atctcggctatacacacccaacttaatgtggaatactcaaaggagttgaaacggcgcatggcaatatacagacattggatgtgatgtgtgattcttagga |
251 |
Q |
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| T |
10313662 |
atctcggctatacacacctagcttaatgtggaatactcaaaggagttgaaatggcgcattgtaatatacacacattggatgtgatgcgtgattcttagca |
10313761 |
T |
|
| Q |
252 |
cgcgatccaaagtagcaaggagttgatctcattgcttttcttcattccttgttccatttctcataatcgaaacgtctataacaactatttcctaagaatc |
351 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
10313762 |
cgcgatccaaattagcaaggagttgatctcattgcttttcttcattccttgttccatttctcataatcgaaacgtttgtaacaactatttcctaagaatc |
10313861 |
T |
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| Q |
352 |
aacaatgataaaactagtaataagcatatatagtacattcatggagttgtttggtttgggcggctttgacatgttccaaggta |
434 |
Q |
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| T |
10313862 |
aac-atgataaaactagtaataagcatatatagtacattcatagagttgtttggtttaggcggctttgacatgttccaaggta |
10313943 |
T |
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