View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_50 (Length: 243)

Name: NF0548_low_50
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_50
NF0548_low_50
[»] chr3 (1 HSPs)
chr3 (60-190)||(45654495-45654625)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 45654625 - 45654495
Alignment:
60 aaaaagaatcacattaaatgtttgtgttaatagaaagaaatgagatgaaatcataaaagtttctattgtttaattgattggaaaaaggaatagattccat 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45654625 aaaaagaatcacattaaatgtttgtgttaatagaaagaaatgagatgaaatcataaaagtttctattgtttaattgattggaaaaaggaatagattccat 45654526  T
160 tcctttctatttgctccttttttctctatca 190  Q
    |||||||||||||||||||||||||||||||    
45654525 tcctttctatttgctccttttttctctatca 45654495  T

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