View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_62 (Length: 216)
Name: NF0548_low_62
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 45654625 - 45654485
Alignment:
| Q |
71 |
aaaaagaatcacattaaatgtttgtgttaatagaaagaaatgagatgaaatcataaaagtttatattgtttaattgattggaaaaaggaatagattccat |
170 |
Q |
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| T |
45654625 |
aaaaagaatcacattaaatgtttgtgttaatagaaagaaatgagatgaaatcataaaagtttctattgtttaattgattggaaaaaggaatagattccat |
45654526 |
T |
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| Q |
171 |
tcctttctatttgctccttttttctctatcatattgttgga |
211 |
Q |
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| T |
45654525 |
tcctttctatttgctccttttttctctatcatatttttgga |
45654485 |
T |
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