View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_7 (Length: 443)
Name: NF0548_low_7
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 31 - 432
Target Start/End: Original strand, 34175483 - 34175886
Alignment:
| Q |
31 |
gccaaaagatagaaacaaaatgaaaatattatactaataaaatcaaaatgagattatataactgctgccgacacacacccaaattgcagtattttttaga |
130 |
Q |
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| T |
34175483 |
gccaaaagatagaaacaaaatgaaaatattatactaataaaatcaaaatgagattatataactgctgccgacacacacccaaattgcagtattttttaga |
34175582 |
T |
|
| Q |
131 |
gaaagaggggaaaggaagg-ctcacactgtcacgcaacaatatcttctgatgattttatatgactactaggaactaacagtccaataattatatgatagt |
229 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34175583 |
gaaagaggggaaaggaaggcctcacactgtcacgcaacaatatcttctgatgattttatatgactactaggaactaacagtccaataattatatgatagt |
34175682 |
T |
|
| Q |
230 |
tgttatc-nnnnnnnnttggtctatccatgaattagtcaaagtgataagagatttgaaccccttaaacaagtggtcataggtttgttatgcgactcttgc |
328 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
34175683 |
tgttatcaacaaaaaattggtctattcatgaattagtcaaagtgataagagatttgaaccccttaaacaagtgatcataggtttattatgcgactcttgc |
34175782 |
T |
|
| Q |
329 |
gtatggaagaacacatcttttattgagattgatcactattaaacaacaatgaaaacttcatactgataacatgataaaagaaatatatcatattatagcc |
428 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34175783 |
gtatggaagaacacatcttttattgaaattgatcactattaaacaacagtgaaaacttcatactaataacatgataaaagaaatatatcatattatagct |
34175882 |
T |
|
| Q |
429 |
cttt |
432 |
Q |
| |
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|||| |
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| T |
34175883 |
cttt |
34175886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 33858550 - 33858581
Alignment:
| Q |
6 |
aaaaaccccccttaaaaccggaccagccaaaa |
37 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33858550 |
aaaaaccccccttaaaaccggaccagccaaaa |
33858581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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