View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0548_low_70 (Length: 202)

Name: NF0548_low_70
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0548_low_70
NF0548_low_70
[»] scaffold0233 (1 HSPs)
scaffold0233 (32-185)||(17367-17521)
[»] chr5 (5 HSPs)
chr5 (32-185)||(26777976-26778130)
chr5 (32-185)||(26791777-26791931)
chr5 (32-185)||(26745347-26745499)
chr5 (32-158)||(26729224-26729351)
chr5 (67-152)||(26834431-26834517)
[»] scaffold0112 (2 HSPs)
scaffold0112 (34-185)||(17466-17618)
scaffold0112 (23-185)||(26160-26329)
[»] scaffold0093 (1 HSPs)
scaffold0093 (32-185)||(20751-20905)
[»] scaffold0416 (1 HSPs)
scaffold0416 (32-152)||(7694-7815)
[»] scaffold0759 (1 HSPs)
scaffold0759 (32-152)||(1997-2120)
[»] chr3 (9 HSPs)
chr3 (23-152)||(13042260-13042393)
chr3 (23-152)||(13050337-13050470)
chr3 (27-185)||(12109383-12109532)
chr3 (64-118)||(30137397-30137451)
chr3 (64-118)||(30143526-30143580)
chr3 (64-118)||(30146948-30147002)
chr3 (64-118)||(30069338-30069392)
chr3 (64-118)||(30132579-30132633)
chr3 (128-185)||(12127250-12127307)
[»] chr6 (1 HSPs)
chr6 (82-118)||(35162547-35162583)


Alignment Details
Target: scaffold0233 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 17521 - 17367
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtt 129  Q
    ||||||||||||||||||||||||| || ||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |||  ||| ||    
T  17521 aaaaaatatacatacagaatatggtgagcatg-aagacagccaaagtagagagcttaacataagacattgtttgatcaaaagaaagaataagctaaaatt 17423  T
Q  130 atttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  17422 atttgatatgaacttagcttagtgttgcattagttcattgttacatgcaacaattt 17367  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 26777976 - 26778130
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtt 129  Q
    |||||||||||||||||||| |||| || ||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||| |||  ||| ||    
T  26777976 aaaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaatt 26778074  T
Q  130 atttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  26778075 atttattatgaacttagcttagtgttgcattagttcattgttacatgcaacaattt 26778130  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 26791931 - 26791777
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtt 129  Q
    |||||||||||||||||||| |||| || ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||  ||| ||    
T  26791931 aaaaaatatacatacagaatgtggtgagcatg-aagacagccaaattagcaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaatt 26791833  T
Q  130 atttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||    
T  26791832 atttgttatgaacttagcttagtgttgcattagttcattgttatatgcaagaattt 26791777  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 26745499 - 26745347
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaaaagagaaagtta 130  Q
    ||||| |||||||||||||||| || || ||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||  | | |    
T  26745499 aaaaattatacatacagaatatagtgagcatg-aagacagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaata-agctaatca 26745402  T
Q  131 tttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  26745401 tttgttatgaacttagctcagtattgcattagttcattgttacatgcaagaattt 26745347  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 26729351 - 26729224
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtt 129  Q
    |||||||||||||||||||| |||| || ||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||  ||| ||    
T  26729351 aaaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtagcgagcttaacataagtcattctttgatcaaaataaagaataagctaaaatt 26729253  T
Q  130 atttgttatgaacttagcttagtcttgca 158  Q
    |||||| |||||||||||||||| |||||    
T  26729252 atttgtgatgaacttagcttagtgttgca 26729224  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 26834517 - 26834431
Alignment:
Q  67 acagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagttatttgttatgaacttagcttagt 152  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||  ||| ||||||| |||||||||||||||||    
T  26834517 acagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgatatgaacttagcttagt 26834431  T

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Target: scaffold0112 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 17466 - 17618
Alignment:
Q  34 aaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagttat 131  Q
    |||||||||||||| |||||||| || ||| |||||||||||| || | || |||||||||||||||||||||||||||||||||| |||  ||| ||||    
T  17466 aaaatatacatacaaaatatggtgagcatg-aagacagccaaagtaacaagtttaacataagtcattgtttgatcaaaagaaagaataagctaaaattat 17564  T
Q  132 ttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  17565 ttgttatgaacttagcttagtgttgcattagttcattgttacatgcaaaaattt 17618  T

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Target: scaffold0112; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 26160 - 26329
Alignment:
Q  23 cgcaatgttaa--aaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttg----atcaaaagaaa 115  Q
    |||||||||||  |||||||||||||||||| |||| || ||| ||||||||| || || | |||||||||||||||||||||||    |||||||||||    
T  26160 cgcaatgttaagaaaaatatacatacagaatgtggtgagcatg-aagacagccgaagtaacaagcttaacataagtcattgtttgtttgatcaaaagaaa 26258  T
Q  116 gaa-aagagaaagttatttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    ||| |||  ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  26259 gaataagctaaaattatttgttatgaacttagcttagtgttgcattagttcattgttacatgcaacaattt 26329  T

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Target: scaffold0093 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 20905 - 20751
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtt 129  Q
    |||||||||||||||||||| |||| || ||| |||||||||||| || | |||||||||||||||||||||||||||||||||| || |||  ||| ||    
T  20905 aaaaaatatacatacagaatgtggtgagcatg-aagacagccaaagtaacaagcttaacataagtcattgtttgatcaaaagaaataataagctaaaatt 20807  T
Q  130 atttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    ||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  20806 atttgttatgaacttagcttagtgttgcattaattccttgttacatgcaacaattt 20751  T

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Target: scaffold0416 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 7694 - 7815
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa-aagagaaagtt 129  Q
    |||||||||||||||||||| |||| || ||| |||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |||  ||| ||    
T  7694 aaaaaatatacatacagaatgtggtgagcatg-aagacagccaaattagcaagcttaacataagtcattgtttgatcaaaataaagaataagttaaaatt 7792  T
Q  130 atttgttatgaacttagcttagt 152  Q
    |||||||||||||||||||||||    
T  7793 atttgttatgaacttagcttagt 7815  T

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Target: scaffold0759 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 2120 - 1997
Alignment:
Q  32 aaaaaatatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacata--agtcattgtttgatcaaaagaaagaa-aagagaaag 127  Q
    |||| ||||||||||||||| |||| || ||| |||||||||||| || |||||||||||||  ||||||||||||||||||| |||||| |||  |||     
T  2120 aaaatatatacatacagaatgtggtgagcatg-aagacagccaaagtaacgagcttaacatataagtcattgtttgatcaaaataaagaataagctaaaa 2022  T
Q  128 ttatttgttatgaacttagcttagt 152  Q
    |||||||||||||||||||||||||    
T  2021 ttatttgttatgaacttagcttagt 1997  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 13042260 - 13042393
Alignment:
Q  23 cgcaatgttaaaaaa---tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    |||||||||||||||   |||||||||||||| | || || ||| || ||||||||| |||| |||||||||||||||||||||||||||||||||| ||    
T  13042260 cgcaatgttaaaaaacaatatacatacagaatgtcgtgagcatgaaa-acagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaataa 13042358  T
Q  119 -aagagaaagttatttgttatgaacttagcttagt 152  Q
     |||  ||| |||||| ||||||||||||||||||    
T  13042359 taagctaaaattatttattatgaacttagcttagt 13042393  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 13050337 - 13050470
Alignment:
Q  23 cgcaatgttaaaaaa---tatacatacagaatatggtaag-atgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    |||||||||||||||   |||||||||||||| | || || ||| || ||||||||| |||| |||||||||||||||||||||||||||||||||| ||    
T  13050337 cgcaatgttaaaaaacaatatacatacagaatgtcgtgagcatgaaa-acagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaataa 13050435  T
Q  119 -aagagaaagttatttgttatgaacttagcttagt 152  Q
     |||  ||| |||||| ||||||||||||||||||    
T  13050436 taagctaaaattatttattatgaacttagcttagt 13050470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 12109532 - 12109383
Alignment:
Q  27 atgttaaaaaatatacatacagaatatggtaagatgcaagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaaaagagaaa 126  Q
    ||||||||| | ||||||||||| | ||||||   | || | ||||||| ||  ||||||||||||||||||||||| |||| |||||||||            
T  12109532 atgttaaaagaaatacatacagagtgtggtaaccaggaatagagccaaagtaatgagcttaacataagtcattgtttaatcagaagaaagaa-------- 12109441  T
Q  127 gttatttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
     |||||||  |||||||||||||| | ||||||||||||||| ||||||||| ||||||    
T  12109440 -ttatttgaaatgaacttagcttattgttgcattagttcattgttacatgcatcaattt 12109383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 30137397 - 30137451
Alignment:
Q  64 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    ||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30137397 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30137451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 30143526 - 30143580
Alignment:
Q  64 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    ||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30143526 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30143580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 30146948 - 30147002
Alignment:
Q  64 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    ||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30146948 aagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30147002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 30069338 - 30069392
Alignment:
Q  64 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    |||||||| |||  ||| ||||||||||||| ||||| |||||||||||||||||    
T  30069338 aagacagcaaaaggagctagcttaacataagccattgattgatcaaaagaaagaa 30069392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 30132579 - 30132633
Alignment:
Q  64 aagacagccaaaatagcgagcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    |||||||| |||  ||| |||||||||||||||||||||  ||||||||||||||    
T  30132579 aagacagcaaaaggagcaagcttaacataagtcattgttctatcaaaagaaagaa 30132633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 12127307 - 12127250
Alignment:
Q  128 ttatttgttatgaacttagcttagtcttgcattagttcattcttacatgcaacaattt 185  Q
    |||||||||||||||||| |||  | ||||||||||||||| || |||||| ||||||    
T  12127307 ttatttgttatgaacttatcttgttgttgcattagttcattgttgcatgcatcaattt 12127250  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 35162583 - 35162547
Alignment:
Q  82 agcttaacataagtcattgtttgatcaaaagaaagaa 118  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  35162583 agcttaacagaagccattgtttgatcaaaagaaagaa 35162547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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