View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_71 (Length: 202)
Name: NF0548_low_71
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 45654485 - 45654625
Alignment:
| Q |
39 |
tccaataatatgatagagaaaaaaggagaaaatagaaaggaatggaatctattccttttgccaatcaattaaacaatagaaacttttatgaattcatctc |
138 |
Q |
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| T |
45654485 |
tccaaaaatatgatagagaaaaaaggagcaaatagaaaggaatggaatctattcctttttccaatcaattaaacaatagaaacttttatgatttcatctc |
45654584 |
T |
|
| Q |
139 |
atttctttctattaacacaaacatttaatgtgattcttttt |
179 |
Q |
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| T |
45654585 |
atttctttctattaacacaaacatttaatgtgattcttttt |
45654625 |
T |
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