View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0548_low_72 (Length: 201)
Name: NF0548_low_72
Description: NF0548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0548_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 33581154 - 33581007
Alignment:
| Q |
21 |
actcacagcttgcaaatgctttgtcaattgaaggagactacctgggttcagtctccgccttagaatgtggatatgcccgtgctgctgaagtacactaccc |
120 |
Q |
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| T |
33581154 |
actcacagcttgcaaaggctttgtcaattgaaggagactaccgaggttaagtctccgccttagaatgtggatatgcctgtgctgctgaagtacactaccc |
33581055 |
T |
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| Q |
121 |
agatttgcaggttagttttgaaaggttacaagaaaagacatctccttt |
168 |
Q |
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| T |
33581054 |
agatttgcaggttagttttgaaaggtttcaagaaaagacatctccttt |
33581007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 32356462 - 32356315
Alignment:
| Q |
21 |
actcacagcttgcaaatgctttgtcaattgaaggagactacctgggttcagtctccgccttagaatgtggatatgcccgtgctgctgaagtacactaccc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||| |
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| T |
32356462 |
actcacagcttgcaaatgctttgtcaattgaaggagactaccggggttcaatctccgccttagaatgtggatatgcctgtgctactgaagtacgctaccc |
32356363 |
T |
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| Q |
121 |
agatttgcaggttagttttgaaaggttacaagaaaagacatctccttt |
168 |
Q |
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||| |||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
32356362 |
agagttgcaggttagtagtgaaaggctacaagaaaagacatctccttt |
32356315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 17922397 - 17922281
Alignment:
| Q |
21 |
actcacagcttgcaaatgctttgtcaattgaaggagactacctgggttcagtctccgccttagaatgtggatatgcccgtgctgctgaagtacactaccc |
120 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||| ||||| ||||||||| | ||||| | |||||| |||||| |
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| T |
17922397 |
actcacagcttgcaaatgctctgtcaactgaaggagactaccggggttcagtctcggccatagaacgtggatatgtctgtgctagtaaagtaccctaccc |
17922298 |
T |
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| Q |
121 |
agatttgcaggttagtt |
137 |
Q |
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||| |||||||||||| |
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| T |
17922297 |
agagatgcaggttagtt |
17922281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 8024690 - 8024603
Alignment:
| Q |
50 |
gaaggagactacctgggttcagtctccgccttagaatgtggatatgcccgtgctgctgaagtacactacccagatttgcaggttagtt |
137 |
Q |
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||||||||||||| |||||||||||| ||||||||| ||||||||| | ||||| || |||||| ||||||||| ||||||||||||| |
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| T |
8024690 |
gaaggagactaccagggttcagtctcggccttagaacgtggatatgtctgtgctactaaagtaccctacccagagttgcaggttagtt |
8024603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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