View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_high_1 (Length: 912)
Name: NF0549_high_1
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 65 - 841
Target Start/End: Original strand, 8909785 - 8910557
Alignment:
| Q |
65 |
acttatgcttttttgagaagaaattatgaaacagatatgtgatcatgagttagggaaaccaccatgaaaggttgattatctgatctgaatataatgttgg |
164 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909785 |
acttatgcttttttgagaagaaattataaaacagatatgtgatcatgagttagggaaaccaccatgaaaggttgattatctgatctgaatataatgttgg |
8909884 |
T |
|
| Q |
165 |
gaatttctcttagccatattggtaattctctgaaaagtaaccaataaaacgagattaaggaaagatttgtggtaagnnnnnnnnnnnnnttggtagacaa |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8909885 |
gaatttctcttagccatattggtaattctctgaaaagtaaccaataaaacgagattaaggaaagatttgtggtaagaaaaaaataaaaattggtagacaa |
8909984 |
T |
|
| Q |
265 |
atgtcagcatattaattgttatgttagtatcttctccttcactagggtttgaaccttgaatcattaactttttcaacttctttaactcttagctcaaatc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8909985 |
atgtcagcatattaattgttatgttagtatcttctccttcactagggtttgaaccttgaatcattaactttttcaacttctttaactcttagctcaaatc |
8910084 |
T |
|
| Q |
365 |
agttgaacaagatttacaaagatcagtggtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatctt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910085 |
agttgaacaagatttacaaagatcagtggtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatctt |
8910184 |
T |
|
| Q |
465 |
gctcaagaaagcgtcacacaatgaacgtatatgtctctatcaacaaagttcaacccgtggttcgccacactggaggaataattaacctttctgtttgact |
564 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8910185 |
gctcaagaaagcgtcacacaatgaacgtatatgtctctatcgacaaagttcaactcgtggttcgccacactggaggaataa----cctttctgtttgact |
8910280 |
T |
|
| Q |
565 |
caaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccagctctaagtgt |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
8910281 |
caaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccaactctaagtgt |
8910380 |
T |
|
| Q |
665 |
tgcatacatatcatgatcccaatcatctttataaattttattaaatcgtaatttccttcaaaattgaactgcacataataacaaaaaattgttagcaata |
764 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8910381 |
tgcatacatatcatgatcccaatcatctttataaattttattaaatcgtaatttccttcaaaattgaactgcacataataacaaaaaattgttagcaata |
8910480 |
T |
|
| Q |
765 |
gcttattacaatccaagtaaatatatcaaatttggtcttaaaagatatgcagacattacatggccatgcacaggttc |
841 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8910481 |
gcttattacaatccaagtaaatatatcaaatttggtcttaaaagatatgcagacattacatggccatgcacaggttc |
8910557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 31951965 - 31951915
Alignment:
| Q |
268 |
tcagcatattaattgttatgttagtatcttctccttcactagggtttgaac |
318 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
31951965 |
tcagtatattagttgttatgttagtattttctctttcactagggtttgaac |
31951915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 847 - 900
Target Start/End: Complemental strand, 15874261 - 15874208
Alignment:
| Q |
847 |
gttcactgaggatgcaattgaaggctacaataataatgatcttgcttggatatt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
15874261 |
gttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatatt |
15874208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 847 - 900
Target Start/End: Original strand, 15899808 - 15899861
Alignment:
| Q |
847 |
gttcactgaggatgcaattgaaggctacaataataatgatcttgcttggatatt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15899808 |
gttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatatt |
15899861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 847 - 900
Target Start/End: Original strand, 15920836 - 15920889
Alignment:
| Q |
847 |
gttcactgaggatgcaattgaaggctacaataataatgatcttgcttggatatt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
15920836 |
gttcactgaggatgcaattgaaggctacaatgataatgatcttgcttggatatt |
15920889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 847 - 905
Target Start/End: Complemental strand, 14060676 - 14060618
Alignment:
| Q |
847 |
gttcactgaggatgcaattgaaggctacaataataatgatcttgcttggatattattcg |
905 |
Q |
| |
|
||||||||| |||||||||||||| | |||| | |||||||||||||||||||| |||| |
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|
| T |
14060676 |
gttcactgaagatgcaattgaaggattcaatgacaatgatcttgcttggatattgttcg |
14060618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 26533878 - 26533821
Alignment:
| Q |
262 |
caaatgtcagcatattaattgttatgttagtatcttctccttcactagggtttgaacc |
319 |
Q |
| |
|
||||||| || |||||| ||||||||||||||| ||||||||| |||||| ||||||| |
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|
| T |
26533878 |
caaatgttagtatattagttgttatgttagtattttctccttcgctagggcttgaacc |
26533821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 319
Target Start/End: Complemental strand, 43675388 - 43675349
Alignment:
| Q |
280 |
ttgttatgttagtatcttctccttcactagggtttgaacc |
319 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
43675388 |
ttgttatgttagtattttctccttcactatggtttgaacc |
43675349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 372
Target Start/End: Original strand, 11660546 - 11660575
Alignment:
| Q |
343 |
tctttaactcttagctcaaatcagttgaac |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11660546 |
tctttaactcttagctcaaatcagttgaac |
11660575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 15165298 - 15165256
Alignment:
| Q |
328 |
ttaactttttcaacttctttaactcttagctcaaatcagttga |
370 |
Q |
| |
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|||||| |||||||||| |||||||| |||||||||||||||| |
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|
| T |
15165298 |
ttaactctttcaacttcgttaactctaagctcaaatcagttga |
15165256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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