View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0549_high_13 (Length: 460)
Name: NF0549_high_13
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 78 - 341
Target Start/End: Original strand, 46041151 - 46041414
Alignment:
| Q |
78 |
cttgttactattttctgaatcttcaatcaacatttccttatcctcttctaagctttgtatatttgtttgaagttcatctgcttctgatcttagtctcttc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46041151 |
cttgttactattttctgaatcttcaatcaacatttccttatcctcttctaagctttgtatatttgtttgaagttcatctgcttctgatcttagtctcttc |
46041250 |
T |
|
| Q |
178 |
actaatccattctgagaagtaactgccgtttccaaactaacaaccttacctacaagctcatcgatcatctctgcaatttctgtcatagtaagcgagtttc |
277 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46041251 |
accaatccattctgagaagtaactgccgtttccaaactaacaaccttacctacaagctcatcgatcatctctgcaatttctgtcatagtaagcgagtttc |
46041350 |
T |
|
| Q |
278 |
caaaatcttcctcaagcttttccttaatcttctcttgcaacatccctatatcatgttcaagcat |
341 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46041351 |
ccgaatcttcctcaagcttttccttaatcttctcttgcaacatccctatatcatgttcaagcat |
46041414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 154 times since January 2019
Visitors: 3674