View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_high_16 (Length: 403)
Name: NF0549_high_16
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 10201432 - 10201298
Alignment:
| Q |
123 |
gcacatatattaacaaccatcacatcaagaagcaacttaacgcaaatttttgtcaatcaaacctgacatgttacctccaccaccaaaatttattattatc |
222 |
Q |
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| T |
10201432 |
gcacatatattaacaaccatcacatcaagaagcaacttaacgcaaatttttgtcaatcaaacctgacatgttacctccaccaccaaaatttattattatc |
10201333 |
T |
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| Q |
223 |
ccaaacttttttcattttcattatcacagaatcct |
257 |
Q |
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| T |
10201332 |
ccaaacttttttcattttcattatcacagaatcct |
10201298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 10201228 - 10201181
Alignment:
| Q |
327 |
gaagatcgttggtaggtagttgaactaactccaatggtagcatgtatc |
374 |
Q |
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| T |
10201228 |
gaagatcgttggtaggtagttgaactaactccaatggtagcatgtatc |
10201181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 10201543 - 10201499
Alignment:
| Q |
12 |
agagaagaaatcagaatgagatttgtggtgataacgtggaccaat |
56 |
Q |
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| T |
10201543 |
agagaagaaatcagaatgagatttgtggtgataacgtggaccaat |
10201499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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