View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0549_high_26 (Length: 324)
Name: NF0549_high_26
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_high_26 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 4 - 324
Target Start/End: Original strand, 15394104 - 15394424
Alignment:
| Q |
4 |
agtatgtgggatttggaacagaaacttgaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgatgcaatgaattct |
103 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15394104 |
agtatgtgggatttgcaacagaaatttgaccagccaatggatgcagaagcaggaaggctcaaaaatatgtacagagaaaaagtatgatgcaatgaattct |
15394203 |
T |
|
| Q |
104 |
attttgtttacataggatactgcaatttgcaacgttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaatttttcgatctatgttatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15394204 |
attttgtttacataggatactgcaatttgcaactttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaatttttcgatctatgttaat |
15394303 |
T |
|
| Q |
204 |
ttgatttgtttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgt |
303 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15394304 |
ttgatttgtttcagaagttttctgcgctgttgcttctacaactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgt |
15394403 |
T |
|
| Q |
304 |
tttctataacacatttcctta |
324 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15394404 |
tttctataacacatttcctta |
15394424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 15385666 - 15385988
Alignment:
| Q |
1 |
ggcagtatgtgggatttggaacagaaacttgaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgatgcaatgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15385666 |
ggcagtatgtgggatttggaacagaaacttgaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgatgcaatgaat |
15385765 |
T |
|
| Q |
101 |
tctattttgtttacataggatactgcaatttgcaacgttgaaattttgatgtctacaacatgtcttttaagtgattttaagtaa-tttttcgatctatgt |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
15385766 |
tctattttgtttacataggaaactgcaatttgcaactttgaaattttgatgtctacgacatgtctgttaagtgattttaagtaattttttcgatctatgt |
15385865 |
T |
|
| Q |
200 |
tattttgatttgtttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||||| ||||||| |
|
|
| T |
15385866 |
tattttgatttgtttcagaagttttctgcgctgttgcttctacgactagcatatcaaagtcttggtgtagtttacggagatttgggaacttcgcccttat |
15385965 |
T |
|
| Q |
300 |
acgttttctataacacatttcct |
322 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
15385966 |
atgttttctataacacatttcct |
15385988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 38669765 - 38669678
Alignment:
| Q |
4 |
agtatgtgggatttggaacagaaacttgaccagccaatggatgcagaagcaggaaggctcagaaatatgtacagagaaaaagtatgat |
91 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| | ||| |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
38669765 |
agtatgtgggatttggatcagaagcttgaccagcctatggaggaagaggcaggaagactcaggaatatgtacagagaaaaagtatgat |
38669678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 38669414 - 38669318
Alignment:
| Q |
213 |
ttcagaagttttctgtgctgttgcttctacgactggcatatcaaagtcttggtgtcgtttatggagatctgggaacttcacccttatacgttttcta |
309 |
Q |
| |
|
||||||| ||||||| ||||| |||| || || |||||||| |||||||| || |||||||||||| |||| ||||||||||| || |||||||| |
|
|
| T |
38669414 |
ttcagaaattttctgcattgttgattctgcggcttgcatatcagagtcttggcgtggtttatggagatttgggcacttcacccttgtatgttttcta |
38669318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1139 times since January 2019
Visitors: 3663