View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_high_35 (Length: 291)

Name: NF0549_high_35
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_high_35
NF0549_high_35
[»] chr1 (21 HSPs)
chr1 (40-291)||(52873325-52873569)
chr1 (1-36)||(16024313-16024348)
chr1 (1-35)||(1762674-1762708)
chr1 (1-35)||(23476341-23476375)
chr1 (1-38)||(32047740-32047777)
chr1 (1-37)||(8760270-8760306)
chr1 (2-38)||(32048599-32048635)
chr1 (1-37)||(46593646-46593682)
chr1 (1-32)||(37585696-37585727)
chr1 (1-36)||(45053105-45053140)
chr1 (2-36)||(12127056-12127090)
chr1 (1-35)||(16023897-16023931)
chr1 (1-30)||(10832002-10832031)
chr1 (1-38)||(20305999-20306036)
chr1 (2-35)||(31704030-31704063)
chr1 (2-35)||(37576598-37576631)
chr1 (1-34)||(44323076-44323109)
chr1 (1-33)||(6797809-6797841)
chr1 (2-34)||(12481060-12481092)
chr1 (1-37)||(26707194-26707230)
chr1 (1-33)||(28884839-28884871)
[»] chr4 (24 HSPs)
chr4 (1-36)||(25269416-25269451)
chr4 (1-38)||(24898605-24898642)
chr4 (1-36)||(14985747-14985782)
chr4 (1-36)||(15477644-15477679)
chr4 (2-37)||(16037792-16037827)
chr4 (5-44)||(41878278-41878317)
chr4 (2-41)||(42855333-42855372)
chr4 (2-36)||(25181811-25181845)
chr4 (1-35)||(33091453-33091487)
chr4 (1-35)||(38339908-38339942)
chr4 (1-35)||(44957773-44957807)
chr4 (1-35)||(44991279-44991313)
chr4 (6-36)||(53259168-53259198)
chr4 (1-38)||(1433687-1433724)
chr4 (2-35)||(8398031-8398064)
chr4 (2-35)||(8592386-8592419)
chr4 (1-38)||(21763597-21763634)
chr4 (1-34)||(30683527-30683560)
chr4 (2-35)||(53994934-53994967)
chr4 (1-38)||(53995351-53995388)
chr4 (2-38)||(624096-624132)
chr4 (1-37)||(47603777-47603813)
chr4 (1-33)||(50769237-50769269)
chr4 (1-33)||(52557089-52557121)
[»] chr5 (9 HSPs)
chr5 (1-35)||(27185874-27185908)
chr5 (72-116)||(26522258-26522302)
chr5 (1-35)||(19128469-19128503)
chr5 (1-35)||(24040503-24040537)
chr5 (1-35)||(38958724-38958758)
chr5 (1-35)||(38959139-38959173)
chr5 (1-38)||(9989320-9989357)
chr5 (1-34)||(19184598-19184631)
chr5 (1-34)||(32288079-32288112)
[»] scaffold0115 (2 HSPs)
scaffold0115 (1-38)||(22569-22606)
scaffold0115 (1-36)||(21511-21546)
[»] chr8 (15 HSPs)
chr8 (1-38)||(24666094-24666131)
chr8 (1-37)||(1646499-1646535)
chr8 (1-37)||(24652821-24652857)
chr8 (1-36)||(1870351-1870386)
chr8 (2-36)||(11920075-11920109)
chr8 (1-35)||(40659983-40660017)
chr8 (1-35)||(45077221-45077255)
chr8 (1-30)||(1432136-1432165)
chr8 (1-38)||(1646922-1646959)
chr8 (1-38)||(5434897-5434934)
chr8 (71-152)||(21141836-21141917)
chr8 (2-35)||(34470961-34470994)
chr8 (1-38)||(37569311-37569348)
chr8 (1-37)||(22763349-22763385)
chr8 (1-37)||(33296100-33296136)
[»] chr7 (15 HSPs)
chr7 (2-35)||(7578872-7578905)
chr7 (1-37)||(4155596-4155632)
chr7 (1-33)||(29276877-29276909)
chr7 (1-36)||(21391189-21391224)
chr7 (1-35)||(17749935-17749969)
chr7 (2-36)||(29277760-29277794)
chr7 (1-35)||(41891966-41892000)
chr7 (2-35)||(1114462-1114495)
chr7 (1-38)||(10526308-10526345)
chr7 (2-35)||(35146699-35146732)
chr7 (1-30)||(41192101-41192130)
chr7 (2-35)||(41453005-41453038)
chr7 (2-35)||(48626063-48626096)
chr7 (2-34)||(19681496-19681528)
chr7 (1-37)||(36423816-36423852)
[»] chr2 (14 HSPs)
chr2 (1-38)||(13192985-13193022)
chr2 (1-38)||(15405753-15405790)
chr2 (2-37)||(7495978-7496013)
chr2 (2-37)||(33470340-33470375)
chr2 (2-36)||(24371966-24372000)
chr2 (1-38)||(8173882-8173919)
chr2 (2-35)||(15744864-15744897)
chr2 (1-34)||(26181701-26181734)
chr2 (2-38)||(7496396-7496432)
chr2 (2-34)||(12860381-12860413)
chr2 (1-37)||(13193404-13193440)
chr2 (1-37)||(24138066-24138102)
chr2 (1-37)||(24372383-24372419)
chr2 (1-37)||(29472658-29472694)
[»] chr6 (20 HSPs)
chr6 (1-37)||(6137377-6137413)
chr6 (1-36)||(9046502-9046537)
chr6 (2-37)||(21856553-21856588)
chr6 (1-36)||(34517271-34517306)
chr6 (2-36)||(978414-978448)
chr6 (1-35)||(9046086-9046120)
chr6 (1-35)||(17244664-17244698)
chr6 (2-35)||(2517419-2517452)
chr6 (1-38)||(18053369-18053406)
chr6 (1-30)||(31237751-31237780)
chr6 (2-35)||(31238163-31238196)
chr6 (1-30)||(31247121-31247150)
chr6 (2-35)||(31247533-31247566)
chr6 (2-35)||(35167490-35167523)
chr6 (1-33)||(6137793-6137825)
chr6 (1-37)||(6235919-6235955)
chr6 (1-33)||(6236337-6236369)
chr6 (1-37)||(7271045-7271081)
chr6 (1-33)||(32753589-32753621)
chr6 (1-37)||(35167871-35167907)
[»] chr3 (24 HSPs)
chr3 (2-38)||(42592201-42592237)
chr3 (1-37)||(49528147-49528183)
chr3 (2-38)||(51509116-51509152)
chr3 (2-37)||(4757492-4757527)
chr3 (1-36)||(4773242-4773277)
chr3 (1-36)||(18464872-18464907)
chr3 (1-36)||(27801905-27801940)
chr3 (1-36)||(39664183-39664218)
chr3 (2-36)||(1994168-1994202)
chr3 (2-36)||(1999327-1999361)
chr3 (2-36)||(4757910-4757944)
chr3 (1-35)||(44317631-44317665)
chr3 (1-38)||(11256519-11256556)
chr3 (5-38)||(22152267-22152300)
chr3 (1-46)||(30681018-30681063)
chr3 (2-35)||(45307109-45307142)
chr3 (1-38)||(47303016-47303053)
chr3 (1-38)||(47303432-47303469)
chr3 (1-37)||(10505946-10505982)
chr3 (1-37)||(11256101-11256137)
chr3 (1-37)||(16931604-16931640)
chr3 (1-37)||(30681833-30681869)
chr3 (2-34)||(42853342-42853374)
chr3 (1-37)||(53716709-53716745)
[»] scaffold0029 (2 HSPs)
scaffold0029 (2-37)||(73178-73213)
scaffold0029 (2-36)||(72761-72795)
[»] scaffold0221 (2 HSPs)
scaffold0221 (1-31)||(8844-8874)
scaffold0221 (1-37)||(8427-8463)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-35)||(15864-15898)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-35)||(113782-113816)
[»] scaffold0526 (1 HSPs)
scaffold0526 (2-35)||(4030-4063)
[»] scaffold0186 (1 HSPs)
scaffold0186 (2-38)||(24159-24195)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-37)||(14551-14587)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 40 - 291
Target Start/End: Original strand, 52873325 - 52873569
Alignment:
Q  40 ttctaatcaaaattggtgatggaaaacttaagagggactaaaagccaaagaaattctttagtggaactaaaacaaaatgttaaaataattttaaggacta 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||    
T  52873325 ttctaaccaaaattggtgatggaaaacttaagagggactaaaagccaaagaaattttttagtggaactaaaacaaaatattaaaatagttttagggacta 52873424  T
Q  140 agaacatatttaaacnnnnnnnnnnctttctttcgcactgcagttatctggatcagttgctgtttgtgttcgtggtaactgcgactacacaactaaagct 239  Q
    ||||||||||||| |           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52873425 agaacatatttaacccctt-------ttttttttgcactgcagttatctggatcagttgctgtttgtgttcgtggtaactgcgactacacaactaaagct 52873517  T
Q  240 acattatcacagtcagtgggtgctactgctgtgttgatgataaatgagagta 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52873518 acattatcacagtcagtgggtgctactgctgtgttgatgataaatgagagta 52873569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16024313 - 16024348
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  16024313 ttaaatagttagaggaccaaaaaagtaattaagcct 16024348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1762708 - 1762674
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1762708 ttaaatagttagaggaccaaaaaagtaattaagcc 1762674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23476375 - 23476341
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23476375 ttaaatagttagaggaccaaaaaagtaattaagcc 23476341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32047777 - 32047740
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32047777 ttaaatagttagaggaccaaaaaggtaattaagcctat 32047740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8760306 - 8760270
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8760306 ttaaatagttagaggaccaaaaaggtaattaagccta 8760270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 32048599 - 32048635
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    |||||||||||||||||||||||||||||||| ||||    
T  32048599 taaatagttagaggaccaaaaaagtaattaagtctat 32048635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46593646 - 46593682
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  46593646 ttaaatagttagaggaccaaaaaagtaatttagccta 46593682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 37585727 - 37585696
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  37585727 ttaaatagttagaggaccaaaaaagtaattaa 37585696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45053105 - 45053140
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  45053105 ttaaatagttagaggaccaaaaaagtaatttagcct 45053140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 12127090 - 12127056
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  12127090 taaatagttagaggaccaaaaaggtaattaagcct 12127056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16023931 - 16023897
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  16023931 ttaaatagttagaggaccaaaaaagtaatttagcc 16023897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 10832002 - 10832031
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  10832002 ttaaatagttagaggaccaaaaaagtaatt 10832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20306036 - 20305999
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  20306036 ttaaatagttagaggaccaaaaaggtaattaaacctat 20305999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 31704030 - 31704063
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  31704030 taaatagttagaggaccaaaaatgtaattaagcc 31704063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 37576598 - 37576631
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  37576598 taaatagttagaggaccaaaaaggtaattaagcc 37576631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44323076 - 44323109
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  44323076 ttaaatagttagaggaccaaaaaggtaattaagc 44323109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6797841 - 6797809
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    |||||||||||||| ||||||||||||||||||    
T  6797841 ttaaatagttagagaaccaaaaaagtaattaag 6797809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 12481092 - 12481060
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagc 34  Q
    |||||||||||||||||||||| ||||||||||    
T  12481092 taaatagttagaggaccaaaaatgtaattaagc 12481060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26707230 - 26707194
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  26707230 ttaaatagttagaggaccaaaaaggtatttaagccta 26707194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28884839 - 28884871
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    ||||||||||||||||||||||||| |||||||    
T  28884839 ttaaatagttagaggaccaaaaaagcaattaag 28884871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25269416 - 25269451
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  25269416 ttaaatagttagaggaccaaaaaagtaattaagcct 25269451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24898605 - 24898642
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  24898605 ttaaatagttagaggacaaaaaaagtaattaagcctat 24898642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14985747 - 14985782
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14985747 ttaaatagttagaggaccaaaaaggtaattaagcct 14985782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15477679 - 15477644
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15477679 ttaaatagttagaggaccaaaaaggtaattaagcct 15477644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 16037827 - 16037792
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  16037827 taaatagttagaggaccaaaaatgtaattaagccta 16037792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 41878278 - 41878317
Alignment:
Q  5 atagttagaggaccaaaaaagtaattaagcctatgttcta 44  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  41878278 atagttagaggaccaaaaaagtaatttagcctatattcta 41878317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 42855372 - 42855333
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcctatgtt 41  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  42855372 taaatagttagaggaccaaaaaggtaattacgcctatgtt 42855333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 25181845 - 25181811
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  25181845 taaatagttagaggaccaaaaatgtaattaagcct 25181811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33091487 - 33091453
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  33091487 ttaaatagttagaggaccaaaaaggtaattaagcc 33091453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38339908 - 38339942
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38339908 ttaaatagttagaggaccaaaaaggtaattaagcc 38339942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44957773 - 44957807
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44957773 ttaaatagttagaggaccaaaaaggtaattaagcc 44957807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44991313 - 44991279
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44991313 ttaaatagttagaggaccaaaaaggtaattaagcc 44991279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 53259198 - 53259168
Alignment:
Q  6 tagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||||||||||||    
T  53259198 tagttagaggaccaaaaaagtaattaagcct 53259168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1433687 - 1433724
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  1433687 ttaaatagttagaggaccaaaaatgtaatttagcctat 1433724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 8398064 - 8398031
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  8398064 taaatagttagaggaccaaaaaggtaattaagcc 8398031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 8592386 - 8592419
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  8592386 taaatagttagaggaccaaaaatgtaattaagcc 8592419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21763597 - 21763634
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  21763597 ttaaatagttagaggaccaaaaatgtaatttagcctat 21763634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30683560 - 30683527
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  30683560 ttaaatagttagaggaccaaaaaggtaattaagc 30683527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 53994967 - 53994934
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  53994967 taaatagttagaggaccaaaaaggtaattaagcc 53994934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 53995351 - 53995388
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  53995351 ttaaatagttagaggaccaaaaaggtaatttagcctat 53995388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 624096 - 624132
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    |||||||||||||||||||||| |||||| |||||||    
T  624096 taaatagttagaggaccaaaaatgtaatttagcctat 624132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47603777 - 47603813
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  47603777 ttaaatagttagaggaccaaaaaggtaatttagccta 47603813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50769237 - 50769269
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    ||||||||||||||||||||||| |||||||||    
T  50769237 ttaaatagttagaggaccaaaaaggtaattaag 50769269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52557121 - 52557089
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    ||||||||||||||||||||||| |||||||||    
T  52557121 ttaaatagttagaggaccaaaaaggtaattaag 52557089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27185908 - 27185874
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27185908 ttaaatagttagaggaccaaaaaagtaattaagcc 27185874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 26522258 - 26522302
Alignment:
Q  72 agggactaaaagccaaagaaattctttagtggaactaaaacaaaa 116  Q
    |||||||||||||  |||||||| |||||||||||||||||||||    
T  26522258 agggactaaaagctgaagaaattttttagtggaactaaaacaaaa 26522302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19128469 - 19128503
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  19128469 ttaaatagttagaggaccaaaaaggtaattaagcc 19128503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24040503 - 24040537
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  24040503 ttaaatagttagaggaccaaaaaagtaatttagcc 24040537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38958758 - 38958724
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38958758 ttaaatagttagaggaccaaaaaggtaattaagcc 38958724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38959139 - 38959173
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  38959139 ttaaatagttagaggaccaaaaaggtaattaagcc 38959173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9989357 - 9989320
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  9989357 ttaaatagttagatgaccaaaaaagtaatttagcctat 9989320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19184631 - 19184598
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  19184631 ttaaatagttagaggaccaaaaaggtaattaagc 19184598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32288112 - 32288079
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  32288112 ttaaatagttagaggaccaaaaaggtaattaagc 32288079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22569 - 22606
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  22569 ttaaatagttagaggaccaaaaaggtaattaagcctat 22606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21546 - 21511
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21546 ttaaatagttagaggaccaaaaaggtaattaagcct 21511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24666094 - 24666131
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24666094 ttaaatagttagaggaccaaaaaggtaattaagcctat 24666131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1646535 - 1646499
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1646535 ttaaatagttagaggaccaaaaaggtaattaagccta 1646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24652857 - 24652821
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24652857 ttaaatagttagaggaccaaaaatgtaattaagccta 24652821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1870351 - 1870386
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1870351 ttaaatagttagaggaccaaaaatgtaattaagcct 1870386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 11920109 - 11920075
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  11920109 taaatagttagaggaccaaaaatgtaattaagcct 11920075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40660017 - 40659983
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  40660017 ttaaatagttagaggaccaaaaaagtaatttagcc 40659983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45077255 - 45077221
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  45077255 ttaaatagttagaggaccaaaaaggtaattaagcc 45077221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 1432165 - 1432136
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  1432165 ttaaatagttagaggaccaaaaaagtaatt 1432136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1646922 - 1646959
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  1646922 ttaaatagttagaggacgaaaaaggtaattaagcctat 1646959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5434934 - 5434897
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  5434934 ttaaatagttagaggaccaaaaaggtaattaagactat 5434897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 21141917 - 21141836
Alignment:
Q  71 gagggactaaaagccaaagaaattctttagtggaactaaaacaaaatgttaaaataattttaaggactaagaacatatttaa 152  Q
    |||||||||||||   |||||||| ||||| || |||||||  ||| ||||| ||| || |||||||||| |||||||||||    
T  21141917 gagggactaaaagttgaagaaattttttagagggactaaaatgaaaggttaacatatttataaggactaaaaacatatttaa 21141836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 34470961 - 34470994
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  34470961 taaatagttagaggaccaaaaaggtaattaagcc 34470994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37569348 - 37569311
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  37569348 ttaaatagttagaggaccaaaaaggtaatcaagcctat 37569311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22763349 - 22763385
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  22763349 ttaaatagttagaggaccaaaaaggtaatttagccta 22763385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33296100 - 33296136
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  33296100 ttaaatagttagaggaccaaaaaggtaatttagccta 33296136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 7578905 - 7578872
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||||||||||||||    
T  7578905 taaatagttagaggaccaaaaaagtaattaagcc 7578872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4155632 - 4155596
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4155632 ttaaatagttagaggaccaaaaaggtaattaagccta 4155596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29276909 - 29276877
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    |||||||||||||||||||||||||||||||||    
T  29276909 ttaaatagttagaggaccaaaaaagtaattaag 29276877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21391224 - 21391189
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21391224 ttaaatagttagaggaccaaaaaggtaattaagcct 21391189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17749969 - 17749935
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  17749969 ttaaatagttagaggaccaaaaaggtaattaagcc 17749935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 29277760 - 29277794
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  29277760 taaatagttagaggaccaaaaaggtaattaagcct 29277794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41892000 - 41891966
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  41892000 ttaaatagttagaggaccaaaaaagtaatttagcc 41891966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 1114462 - 1114495
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  1114462 taaatagttagaggaccaaaaatgtaattaagcc 1114495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10526345 - 10526308
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  10526345 ttaaatagttagaggaccaaaaaggtaatttagcctat 10526308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 35146732 - 35146699
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  35146732 taaatagttagaggaccaaaaaggtaattaagcc 35146699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 41192101 - 41192130
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  41192101 ttaaatagttagaggaccaaaaaagtaatt 41192130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 41453038 - 41453005
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  41453038 taaatagttagaggaccaaaaatgtaattaagcc 41453005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 48626096 - 48626063
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  48626096 taaatagttagaggaccaaaaaggtaattaagcc 48626063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 19681528 - 19681496
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagc 34  Q
    |||||||||||||||||||||| ||||||||||    
T  19681528 taaatagttagaggaccaaaaaggtaattaagc 19681496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36423816 - 36423852
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  36423816 ttaaatagttagaggaccaaaaaggtaatttagccta 36423852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13193022 - 13192985
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  13193022 ttaaatagttagaggaccaaaaaagtaatttagcctat 13192985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15405790 - 15405753
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  15405790 ttaaatagttagaggaccaaaaatgtaattaagcctat 15405753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 7496013 - 7495978
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  7496013 taaatagttagaggaccaaaaatgtaattaagccta 7495978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 33470340 - 33470375
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  33470340 taaatagttagaggaccaaaaaggtaattaagccta 33470375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 24372000 - 24371966
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  24372000 taaatagttagaggaccaaaaaggtaattaagcct 24371966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8173919 - 8173882
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  8173919 ttaaatagttagaggaccaaaaaggtaattaaacctat 8173882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 15744864 - 15744897
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  15744864 taaatagttagaggaccaaaaatgtaattaagcc 15744897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26181734 - 26181701
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  26181734 ttaaatagttagaggaccaaaaaggtaattaagc 26181701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 7496396 - 7496432
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  7496396 taaatagttagaggactaaaaatgtaattaagcctat 7496432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 12860413 - 12860381
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagc 34  Q
    |||||||||||||||||||||| ||||||||||    
T  12860413 taaatagttagaggaccaaaaatgtaattaagc 12860381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13193404 - 13193440
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  13193404 ttaaatagttagaggaccaaaaatataattaagccta 13193440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24138102 - 24138066
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  24138102 ttaaatagttagaggaccaaaaaggtaatttagccta 24138066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24372383 - 24372419
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  24372383 ttaaatagttagaggaccaaaaatgtaatttagccta 24372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29472658 - 29472694
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29472658 ttaaatagttagaggaccaaaaaggtatttaagccta 29472694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6137413 - 6137377
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  6137413 ttaaatagttagaggaccaaaaaggtaattaagccta 6137377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9046502 - 9046537
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9046502 ttaaatagttagaggaccaaaaaggtaattaagcct 9046537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 21856588 - 21856553
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  21856588 taaatagttagaggaccaaaaatgtaattaagccta 21856553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34517306 - 34517271
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  34517306 ttaaatagttagaggaccaaaaaagtaatttagcct 34517271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 978448 - 978414
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  978448 taaatagttagaggaccaaaaatgtaattaagcct 978414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9046120 - 9046086
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  9046120 ttaaatagttagaggaccaaaaaagtaatttagcc 9046086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17244698 - 17244664
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  17244698 ttaaatagttagaggaccaaaaaggtaattaagcc 17244664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 2517419 - 2517452
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  2517419 taaatagttagaggaccaaaaaggtaattaagcc 2517452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18053369 - 18053406
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  18053369 ttaaatagttagaggaccaaaaaggtaactaagcctat 18053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 31237780 - 31237751
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  31237780 ttaaatagttagaggaccaaaaaagtaatt 31237751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 31238163 - 31238196
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  31238163 taaatagttagaggaccaaaaaggtaattaagcc 31238196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 31247150 - 31247121
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  31247150 ttaaatagttagaggaccaaaaaagtaatt 31247121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 31247533 - 31247566
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  31247533 taaatagttagaggaccaaaaaggtaattaagcc 31247566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 35167523 - 35167490
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  35167523 taaatagttagaggaccaaaaaggtaattaagcc 35167490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6137793 - 6137825
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    ||||||||||||||||||||||| |||||||||    
T  6137793 ttaaatagttagaggaccaaaaaggtaattaag 6137825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6235955 - 6235919
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  6235955 ttaaatagttagaggaccaaaaaggtaatttagccta 6235919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6236337 - 6236369
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    |||||||||||| ||||||||||||||||||||    
T  6236337 ttaaatagttaggggaccaaaaaagtaattaag 6236369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7271045 - 7271081
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| | |||||||||||    
T  7271045 ttaaatagttagaggaccaaaaaggcaattaagccta 7271081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32753589 - 32753621
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaag 33  Q
    ||||||||||||||||||||||| |||||||||    
T  32753589 ttaaatagttagaggaccaaaaaggtaattaag 32753621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35167871 - 35167907
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  35167871 ttaaatagttagaggaccaaaaatgtaatttagccta 35167907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 42592201 - 42592237
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  42592201 taaatagttagaggaccaaaaatgtaattaagcctat 42592237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49528183 - 49528147
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49528183 ttaaatagttagaggaccaaaaaggtaattaagccta 49528147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 51509152 - 51509116
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  51509152 taaatagttagaggaccaaaaaggtaattaagcctat 51509116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 4757527 - 4757492
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  4757527 taaatagttagaggaccaaaaatgtaattaagccta 4757492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4773277 - 4773242
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4773277 ttaaatagttagaggaccaaaaaggtaattaagcct 4773242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18464872 - 18464907
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18464872 ttaaatagttagaggaccaaaaaggtaattaagcct 18464907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27801905 - 27801940
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27801905 ttaaatagttagaggaccaaaaaggtaattaagcct 27801940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39664218 - 39664183
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39664218 ttaaatagttagaggaccaaaaaggtaattaagcct 39664183  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 1994202 - 1994168
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  1994202 taaatagttagaggaccaaaaatgtaattaagcct 1994168  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 1999361 - 1999327
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  1999361 taaatagttagaggaccaaaaatgtaattaagcct 1999327  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 4757910 - 4757944
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  4757910 taaatagttagaggaccaaaaatgtaattaagcct 4757944  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44317631 - 44317665
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44317631 ttaaatagttagaggaccaaaaaggtaattaagcc 44317665  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11256519 - 11256556
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  11256519 ttaaatagttagaggaccaaaaaggtaattacgcctat 11256556  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 22152267 - 22152300
Alignment:
Q  5 atagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  22152267 atagttagaggaccaaaaaggtaattaagcctat 22152300  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30681063 - 30681018
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctatgttctaat 46  Q
    ||||||||||||| ||||||||| |||||||||||| | |||||||    
T  30681063 ttaaatagttagatgaccaaaaatgtaattaagcctcttttctaat 30681018  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 45307109 - 45307142
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  45307109 taaatagttagaggaccaaaaaggtaattaagcc 45307142  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47303053 - 47303016
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||| || |||||||||||||||||||||    
T  47303053 ttaaatagttagatgatcaaaaaagtaattaagcctat 47303016  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47303432 - 47303469
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  47303432 ttaaatagttagaggaccaaaaatgtaattaaacctat 47303469  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10505982 - 10505946
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  10505982 ttaaatagttagaggaccaaaaaggtaattaaaccta 10505946  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11256137 - 11256101
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  11256137 ttaaatagttagaggactaaaaaggtaattaagccta 11256101  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16931640 - 16931604
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  16931640 ttaaatagttagaggaccaaaaatgtaatttagccta 16931604  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30681833 - 30681869
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  30681833 ttaaatagttagaggaccaaaaagataattaagccta 30681869  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 42853342 - 42853374
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagc 34  Q
    |||||||||||||||||||||| ||||||||||    
T  42853342 taaatagttagaggaccaaaaatgtaattaagc 42853374  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 53716709 - 53716745
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  53716709 ttaaatagttagatgaccaaaaaggtaattaagccta 53716745  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 73178 - 73213
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagccta 37  Q
    |||||||||||||||||||||| |||||||||||||    
T  73178 taaatagttagaggaccaaaaatgtaattaagccta 73213  T

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Target: scaffold0029; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 72795 - 72761
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcct 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  72795 taaatagttagaggaccaaaaaggtaattaagcct 72761  T

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Target: scaffold0221 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8844 - 8874
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaatta 31  Q
    |||||||||||||||||||||||||||||||    
T  8844 ttaaatagttagaggaccaaaaaagtaatta 8874  T

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Target: scaffold0221; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8463 - 8427
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  8463 ttaaatagttagaggaccaaaaaggtaatttagccta 8427  T

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Target: scaffold0072 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15864 - 15898
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  15864 ttaaatagttagaggatcaaaaaagtaattaagcc 15898  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 113782 - 113816
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  113782 ttaaatagttagaggaccaaaaatgtaattaagcc 113816  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 4063 - 4030
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcc 35  Q
    |||||||||||||||||||||| |||||||||||    
T  4063 taaatagttagaggaccaaaaaggtaattaagcc 4030  T

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Target: scaffold0186 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 24195 - 24159
Alignment:
Q  2 taaatagttagaggaccaaaaaagtaattaagcctat 38  Q
    |||||||||||||||||||||| |||||| |||||||    
T  24195 taaatagttagaggaccaaaaaggtaatttagcctat 24159  T

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Target: scaffold0134 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14551 - 14587
Alignment:
Q  1 ttaaatagttagaggaccaaaaaagtaattaagccta 37  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  14551 ttaaatagttagaggaccaaaaaggtaatttagccta 14587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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