View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_high_37 (Length: 261)
Name: NF0549_high_37
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 43384116 - 43383963
Alignment:
| Q |
10 |
aataatatgaaacatacatgagcaacggtgat----gatgacctaataacttaactaagtagtaaaatatatattagaagagtaaagaagaagaaattaa |
105 |
Q |
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| T |
43384116 |
aataaaatgaaacaaacatgagcaacggtgatcgatgatgacctaataacttaattaagtagtaaaatatatattagaagagtaaagaagaagaaattaa |
43384017 |
T |
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| Q |
106 |
ttaattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgattat |
159 |
Q |
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| T |
43384016 |
ttaattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgattat |
43383963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 25870684 - 25870636
Alignment:
| Q |
108 |
aattaaagtcccaacctcaaatcaagagtgaggggagaagaagaatgat |
156 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
25870684 |
aattaaagtcacaacctcaaatgaagagtgaggggagaagaagaatgat |
25870636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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