View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_high_46 (Length: 230)

Name: NF0549_high_46
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_high_46
NF0549_high_46
[»] chr5 (30 HSPs)
chr5 (1-230)||(27351258-27351489)
chr5 (21-148)||(43511548-43511676)
chr5 (21-148)||(10591279-10591407)
chr5 (21-148)||(29156120-29156248)
chr5 (22-148)||(138075-138202)
chr5 (21-148)||(17513942-17514070)
chr5 (60-148)||(20975955-20976043)
chr5 (21-148)||(42291887-42292015)
chr5 (21-148)||(4734588-4734716)
chr5 (21-148)||(5829315-5829441)
chr5 (8-148)||(26377780-26377924)
chr5 (16-148)||(13474554-13474688)
chr5 (23-148)||(40956245-40956371)
chr5 (21-148)||(3349735-3349862)
chr5 (34-148)||(10033489-10033605)
chr5 (1-147)||(23069129-23069277)
chr5 (8-148)||(13656123-13656268)
chr5 (34-148)||(19099320-19099435)
chr5 (62-148)||(18873425-18873515)
chr5 (13-148)||(36718573-36718711)
chr5 (8-148)||(12661219-12661367)
chr5 (19-148)||(16515452-16515582)
chr5 (76-148)||(13423850-13423922)
chr5 (26-137)||(40779127-40779239)
chr5 (24-148)||(17325777-17325903)
chr5 (90-135)||(37029051-37029096)
chr5 (64-132)||(931354-931422)
chr5 (20-137)||(8379538-8379656)
chr5 (16-113)||(26311929-26312029)
chr5 (5-98)||(8398893-8398989)
[»] chr1 (40 HSPs)
chr1 (1-148)||(27703535-27703684)
chr1 (19-148)||(5560411-5560541)
chr1 (21-148)||(12971336-12971464)
chr1 (8-148)||(12884143-12884286)
chr1 (34-148)||(37873768-37873883)
chr1 (1-137)||(15441199-15441337)
chr1 (7-148)||(24556722-24556864)
chr1 (36-148)||(44836727-44836840)
chr1 (13-148)||(17674360-17674495)
chr1 (5-148)||(30899567-30899714)
chr1 (13-148)||(10109640-10109778)
chr1 (8-148)||(50552410-50552553)
chr1 (8-148)||(51110107-51110250)
chr1 (5-148)||(25930515-25930662)
chr1 (37-148)||(50371080-50371192)
chr1 (34-148)||(6150664-6150779)
chr1 (29-146)||(42740048-42740166)
chr1 (5-148)||(48722376-48722524)
chr1 (8-148)||(1269475-1269609)
chr1 (1-147)||(3907381-3907528)
chr1 (8-148)||(18127943-18128086)
chr1 (19-148)||(14084707-14084837)
chr1 (7-148)||(20905293-20905438)
chr1 (29-148)||(22386843-22386963)
chr1 (34-148)||(17487289-17487404)
chr1 (16-112)||(26486407-26486504)
chr1 (5-148)||(33124636-33124784)
chr1 (76-148)||(28885677-28885749)
chr1 (90-146)||(30004915-30004971)
chr1 (5-71)||(20470640-20470708)
chr1 (104-148)||(52055566-52055610)
chr1 (104-149)||(13120871-13120916)
chr1 (167-223)||(17487213-17487269)
chr1 (64-135)||(9777387-9777458)
chr1 (77-148)||(29208104-29208175)
chr1 (104-135)||(32810370-32810401)
chr1 (167-225)||(5560561-5560619)
chr1 (167-225)||(28885599-28885657)
chr1 (2-111)||(31369432-31369542)
chr1 (168-220)||(12971484-12971536)
[»] chr6 (25 HSPs)
chr6 (5-148)||(12614722-12614866)
chr6 (8-148)||(2618271-2618413)
chr6 (21-148)||(31860933-31861059)
chr6 (61-148)||(3748574-3748661)
chr6 (34-148)||(30915372-30915487)
chr6 (8-148)||(6754122-6754264)
chr6 (22-148)||(19231544-19231670)
chr6 (8-148)||(6360676-6360817)
chr6 (21-137)||(29308484-29308601)
chr6 (21-148)||(1690639-1690767)
chr6 (77-148)||(628101-628172)
chr6 (8-148)||(3514856-3514999)
chr6 (20-148)||(57616-57746)
chr6 (16-148)||(7525172-7525306)
chr6 (16-148)||(29149324-29149461)
chr6 (26-136)||(1093058-1093169)
chr6 (8-148)||(29401055-29401198)
chr6 (1-135)||(11088465-11088591)
chr6 (74-135)||(31234897-31234956)
chr6 (5-71)||(31258541-31258609)
chr6 (64-148)||(14893423-14893507)
chr6 (92-144)||(21946109-21946161)
chr6 (61-135)||(350385-350459)
chr6 (1-86)||(6294189-6294275)
chr6 (74-135)||(31244034-31244092)
[»] chr8 (25 HSPs)
chr8 (21-148)||(34523957-34524085)
chr8 (1-148)||(32098184-32098333)
chr8 (5-148)||(43968076-43968222)
chr8 (8-148)||(3628753-3628894)
chr8 (21-148)||(39697944-39698072)
chr8 (21-148)||(23567280-23567408)
chr8 (8-148)||(7858000-7858143)
chr8 (8-148)||(13585214-13585357)
chr8 (62-148)||(3471572-3471658)
chr8 (21-148)||(12531489-12531617)
chr8 (16-148)||(43926329-43926464)
chr8 (8-148)||(18420615-18420758)
chr8 (19-148)||(5869328-5869456)
chr8 (19-134)||(35874852-35874970)
chr8 (34-137)||(30915305-30915409)
chr8 (76-148)||(42951775-42951847)
chr8 (62-148)||(27074546-27074632)
chr8 (77-148)||(18112103-18112174)
chr8 (26-133)||(33452728-33452834)
chr8 (34-148)||(44665052-44665167)
chr8 (74-147)||(42076092-42076165)
chr8 (21-98)||(42777683-42777761)
chr8 (119-152)||(3575142-3575175)
chr8 (167-220)||(43968003-43968056)
chr8 (169-225)||(34523880-34523936)
[»] chr7 (29 HSPs)
chr7 (21-148)||(26282548-26282676)
chr7 (21-148)||(40001702-40001830)
chr7 (5-148)||(18015588-18015733)
chr7 (20-148)||(26633292-26633421)
chr7 (16-148)||(6380090-6380225)
chr7 (20-148)||(33909992-33910122)
chr7 (19-148)||(36438357-36438487)
chr7 (16-148)||(44894035-44894169)
chr7 (5-145)||(4099880-4100023)
chr7 (20-226)||(32956703-32956911)
chr7 (16-148)||(9479052-9479185)
chr7 (20-148)||(40737997-40738126)
chr7 (21-148)||(1365939-1366067)
chr7 (5-148)||(33419123-33419270)
chr7 (76-146)||(7636334-7636404)
chr7 (1-148)||(30739031-30739181)
chr7 (8-148)||(8358300-8358443)
chr7 (8-148)||(46221709-46221852)
chr7 (16-148)||(36796378-36796512)
chr7 (8-148)||(42161126-42161271)
chr7 (20-144)||(25061833-25061957)
chr7 (24-148)||(42311943-42312067)
chr7 (64-148)||(773890-773974)
chr7 (21-148)||(18895403-18895531)
chr7 (8-148)||(11672499-11672644)
chr7 (77-148)||(12251294-12251365)
chr7 (3-101)||(40841298-40841399)
chr7 (13-148)||(7366609-7366745)
chr7 (8-51)||(12251492-12251536)
[»] chr4 (29 HSPs)
chr4 (21-148)||(35653986-35654114)
chr4 (20-147)||(22423613-22423741)
chr4 (23-148)||(5545261-5545387)
chr4 (19-148)||(21791553-21791683)
chr4 (8-148)||(32130796-32130938)
chr4 (5-144)||(19661292-19661433)
chr4 (8-148)||(43154794-43154936)
chr4 (8-148)||(53011628-53011770)
chr4 (5-148)||(23256508-23256652)
chr4 (21-148)||(34982154-34982282)
chr4 (19-148)||(27632325-27632456)
chr4 (5-148)||(28463594-28463740)
chr4 (7-148)||(23426172-23426316)
chr4 (21-148)||(45172651-45172778)
chr4 (21-148)||(55134138-55134266)
chr4 (7-148)||(11681748-11681893)
chr4 (7-148)||(11690027-11690172)
chr4 (19-134)||(24449052-24449170)
chr4 (16-148)||(44477962-44478097)
chr4 (29-148)||(10575529-10575646)
chr4 (34-148)||(29579823-29579938)
chr4 (62-144)||(16072566-16072648)
chr4 (6-101)||(21168970-21169068)
chr4 (167-225)||(53011790-53011848)
chr4 (188-225)||(11681670-11681707)
chr4 (188-225)||(11689949-11689986)
chr4 (1-101)||(26329085-26329185)
chr4 (167-223)||(23426096-23426152)
chr4 (8-47)||(48512330-48512370)
[»] chr2 (39 HSPs)
chr2 (19-145)||(39081326-39081453)
chr2 (5-148)||(42411564-42411709)
chr2 (21-148)||(18916060-18916188)
chr2 (5-148)||(19367425-19367571)
chr2 (8-148)||(1418827-1418967)
chr2 (5-148)||(13020334-13020481)
chr2 (21-148)||(21747236-21747364)
chr2 (21-148)||(38985715-38985842)
chr2 (5-148)||(7993545-7993690)
chr2 (21-148)||(15457430-15457558)
chr2 (24-148)||(2063738-2063863)
chr2 (21-148)||(18172946-18173073)
chr2 (8-148)||(18676317-18676460)
chr2 (5-148)||(26151753-26151900)
chr2 (19-148)||(34061862-34061992)
chr2 (5-148)||(41096544-41096690)
chr2 (5-148)||(45618889-45619034)
chr2 (1-144)||(36059915-36060060)
chr2 (34-148)||(6530602-6530717)
chr2 (22-148)||(27302534-27302661)
chr2 (21-148)||(13997244-13997372)
chr2 (34-148)||(45042332-45042450)
chr2 (76-148)||(4855979-4856051)
chr2 (20-135)||(1226286-1226400)
chr2 (21-148)||(17117651-17117771)
chr2 (64-147)||(38599376-38599459)
chr2 (61-148)||(29480643-29480730)
chr2 (16-149)||(12269350-12269483)
chr2 (8-147)||(31273173-31273313)
chr2 (62-101)||(13001617-13001656)
chr2 (8-148)||(25222238-25222381)
chr2 (61-145)||(18482515-18482600)
chr2 (26-101)||(9029547-9029623)
chr2 (29-88)||(32186216-32186276)
chr2 (8-111)||(36481321-36481425)
chr2 (167-225)||(25222401-25222459)
chr2 (167-225)||(36481472-36481530)
chr2 (169-225)||(17117574-17117630)
chr2 (168-220)||(18172874-18172926)
[»] chr3 (30 HSPs)
chr3 (5-148)||(23164578-23164723)
chr3 (5-148)||(51939562-51939707)
chr3 (8-148)||(7766978-7767121)
chr3 (5-145)||(54430465-54430607)
chr3 (16-148)||(21784790-21784923)
chr3 (21-148)||(36538192-36538320)
chr3 (8-148)||(29387760-29387903)
chr3 (8-148)||(41707061-41707204)
chr3 (34-148)||(27303130-27303245)
chr3 (22-148)||(42009268-42009395)
chr3 (5-148)||(8364084-8364230)
chr3 (8-148)||(18408107-18408249)
chr3 (21-148)||(21596265-21596393)
chr3 (8-148)||(28132741-28132884)
chr3 (8-148)||(23067731-23067875)
chr3 (21-148)||(48627035-48627163)
chr3 (8-148)||(46791703-46791846)
chr3 (34-148)||(50677320-50677435)
chr3 (61-135)||(1649850-1649924)
chr3 (22-148)||(52655129-52655257)
chr3 (34-148)||(25599092-25599207)
chr3 (21-135)||(43905862-43905977)
chr3 (61-148)||(46904713-46904800)
chr3 (20-137)||(40152147-40152265)
chr3 (34-148)||(13401402-13401517)
chr3 (61-148)||(19965886-19965973)
chr3 (17-148)||(27729775-27729908)
chr3 (8-148)||(24252534-24252678)
chr3 (61-148)||(51146909-51146995)
chr3 (167-220)||(24252698-24252751)
[»] scaffold0126 (1 HSPs)
scaffold0126 (16-148)||(16634-16768)
[»] scaffold0181 (1 HSPs)
scaffold0181 (16-148)||(17138-17273)
[»] scaffold0606 (1 HSPs)
scaffold0606 (25-148)||(8401-8525)
[»] scaffold0100 (1 HSPs)
scaffold0100 (76-148)||(46179-46251)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27351258 - 27351489
Alignment:
Q  1 tacttccttttctttttt-agtacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgt 98  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||    
T  27351258 tacttccttttctttcttcagtatacgtttgagatttttctagactctagttctcctttctgaacataaatttggtgctatcaaaccacctccaatttgt 27351357  T
Q  99 atagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcacctaannnnnnnnnnnnnngcataaaccattcattttcttctttttcacaa 198  Q
    ||| ||||||||||| |||||||| |||| ||||||||| ||||||| ||||||              |||||||||| ||||||||||||||  |||||    
T  27351358 ataaccacttaatcagtcaatttggaaagttatttcattgaaagaataacctaaatcatttcttttttgcataaaccagtcattttcttctttcccacaa 27351457  T
Q  199 cggatgagtgacaaatccaaacaacactatta 230  Q
    |||| |||||||||||| |||| |||||||||    
T  27351458 cggaggagtgacaaatctaaacgacactatta 27351489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 43511548 - 43511676
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || |||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||| |||||    
T  43511548 tacacgtttgagttttttctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaat 43511647  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||  ||||||||||    
T  43511648 ttgaaaagctatttcatggaaagaatcac 43511676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 10591407 - 10591279
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || ||||| ||||||| |||| ||||||||||||||||||||||||||  |||||||||| | |||    
T  10591407 tacacgtttgagttttttctagactttagttctcctatctgaacataaatatggtactatcaaaccacccccaatttgtataatcacttaatcagttaat 10591308  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| ||||||||| ||||||||||    
T  10591307 ttgaaaagttatttcattgaaagaatcac 10591279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 29156120 - 29156248
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||||| || ||||| ||||||| |||| ||||||||||||||| ||||||||||  |||||||||| |||||    
T  29156120 tacacgtttgagttttttctagactatagttatcctatctgaacataaatctggtactatcaaaccacccctaatttgtataatcacttaatcagtcaat 29156219  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    || ||||| ||||||||| ||||||||||    
T  29156220 ttaaaaagttatttcattgaaagaatcac 29156248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 138075 - 138202
Alignment:
Q  22 acacgtttgagatttttctagactctagttattcttt-ctgacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatt 120  Q
    |||||| |||| |||||||||||||||||| | |||| | |||||||||||| |||||||||||||||  |||||||||||  |||||||||| ||||||    
T  138075 acacgtatgagttttttctagactctagttctacttttcggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 138174  T
Q  121 tgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||||| ||| ||||||    
T  138175 tgaaaagctatttcattgaaataatcac 138202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 17514070 - 17513942
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || |||| | |||||| |||| ||| ||||||||||||||||||||||  |||||||||| |||||    
T  17514070 tacacgtttgaggtttttctagactttagttctcctatctggatataaatctggtactaacaaaccacccccaatttgtataatcacttaatcagtcaat 17513971  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| ||||||| | ||||||||||    
T  17513970 ttgaaaagttatttcactgaaagaatcac 17513942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 20975955 - 20976043
Alignment:
Q  60 tgacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||| ||||||||||||| ||||||||||||  || ||||||| ||||||||||||||||||||||| ||||||||||    
T  20975955 tgacataaatttggtactatcaaaccaccaccaatttgtataatcatttaatcagtcaatttgaaaagctatttcattgaaagaatcac 20976043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 42292015 - 42291887
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||  |||||||| ||| ||||| | || |||| ||||||||||||| |||||||| |||| ||||||||||||  |||||||||| |||||    
T  42292015 tacacgtttgacttttttctaaactttagttctcctatctggacataaatttggtactatcaaatcaccaccaatttgtataatcacttaatcagtcaat 42291916  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| |||||||||| ||||||||||    
T  42291915 ttgaaaatctatttcattgaaagaatcac 42291887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 4734716 - 4734588
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||| ||||||| |||||||||||| ||||| | || |||| |||||||| |||| ||||||||||||| ||||||||||||  | ||| |||| |||||    
T  4734716 tacatgtttgagttttttctagactttagttctcctatctggacataaatctggtactatcaaaccaccaccaatttgtataatcccttgatcactcaat 4734617  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| |||||||||| ||||||||||    
T  4734616 ttgaaaatctatttcattgaaagaatcac 4734588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 5829315 - 5829441
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| ||||| |||||| ||||| | || ||| ||||||||| |||| ||||||||||| || |||||||||||  |||||||||| |||||    
T  5829315 tacacgtttgagttttttatagactttagttctcctatcttgacataaatctggtactatcaaaccaacctcaatttgtataatcacttaatcagtcaat 5829414  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||  |||||||||||||| ||||||||||    
T  5829415 tt--aaagctatttcattaaaagaatcac 5829441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 26377924 - 26377780
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagc 103  Q
    |||||||| ||||||||||||||||| |||||  ||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||      
T  26377924 ttttctttctttagtacacgtttgagttttttttctagactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataat 26377825  T
Q  104 cacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  26377824 cacttattcagtcaatgtgagaagctatttcattgaaagaatcac 26377780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 13474554 - 13474688
Alignment:
Q  16 tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatca 113  Q
    ||||||||||||||||| ||||| ||| ||||||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||  ||||||||||    
T  13474554 tttagtacacgtttgagtttttttctaaactctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatca 13474653  T
Q  114 atcaatttgaaaagctatttcatttaaagaatcac 148  Q
     ||||||||||||| | ||||||| ||||||||||    
T  13474654 gtcaatttgaaaagttgtttcattgaaagaatcac 13474688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 40956245 - 40956371
Alignment:
Q  23 cacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaattt 121  Q
    |||||||||| |||||||||||||||||| | |||| || |||||||| || ||| |||||||   | ||||||||||||  |||||||||| | |||||    
T  40956245 cacgtttgagttttttctagactctagttctcctttgtggacataaatctgatgcaatcaaacattctccaatttgtataatcacttaatcatttaattt 40956344  T
Q  122 gaaaagctatttcatttaaagaatcac 148  Q
    ||||| |||||||||| ||||||||||    
T  40956345 gaaaaactatttcattaaaagaatcac 40956371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 3349862 - 3349735
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || |||| ||||||||||||| | ||||||||||  |||||| | |||   ||||||||| |||||    
T  3349862 tacacgtttgagttttttctagactttagttctcctatctggacataaatttggtac-atcaaaccactaccaattggaataatgacttaatcagtcaat 3349764  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||  ||||||||||    
T  3349763 ttgaaaagctatttcatagaaagaatcac 3349735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 10033489 - 10033605
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaa-tcaatttgaaaagctat 131  Q
    |||||||||||||||||| | ||||||| ||||||||||| |||||||||||| ||  |||||||||||  |||| | | || |||||||||||||||||    
T  10033489 tttttctagactctagttctactttctgtacataaatttgatgctatcaaacccccatcaatttgtataatcactgattaaagtcaatttgaaaagctat 10033588  T
Q  132 ttcatttaaagaatcac 148  Q
    || ||| ||||||||||    
T  10033589 tttattgaaagaatcac 10033605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 23069129 - 23069277
Alignment:
Q  1 tacttccttttcttttttagt-acacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgt 98  Q
    |||||| |||||||| || || ||||||||| | ||||| || |||||| || | |||||||| ||||||| || ||||| |||||||||||||||||||    
T  23069129 tacttctttttctttcttcgttacacgtttgtgttttttttatactctaattctcctttctgaacataaatatgatgctagcaaaccacccccaatttgt 23069228  T
Q  99 atagccacttaatcaatcaatttgaaaagctatttcatttaaagaatca 147  Q
    |||  | |||||||| || ||||| ||||||||||||||  ||||||||    
T  23069229 ataatcccttaatcattcgatttggaaagctatttcattacaagaatca 23069277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 13656123 - 13656268
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaa---ccacccccaatttgtatag 102  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| | |||| || ||||||||  | | |||  |||   ||| ||| ||||||||||     
T  13656123 ttttctttctttagtacacgtttgagttttttctagactctagttctcctttttgtacataaatcggatcctaaaaaaaaaccatccctaatttgtataa 13656222  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||||| ||||||||||||| ||||||||| ||||||||||    
T  13656223 tcacttaatcagtcaatttgaaaagttatttcattgaaagaatcac 13656268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 19099435 - 19099320
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    ||||| |||||| ||||| | |||| || |||||||| || | ||||||||||| ||| ||||||||||  |||||||||| ||||||| ||||||||||    
T  19099435 tttttttagactatagttctcctttttgtacataaatctgatcctatcaaaccatccctaatttgtataatcacttaatcagtcaatttaaaaagctatt 19099336  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  19099335 tcattgaaagaatcac 19099320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 18873425 - 18873515
Alignment:
Q  62 acataaatttggtgctatcaaaccaccccc----aatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||| |||||||||||||||  |    |||||||||| |||||||||||  |||||||||||||||||||||| ||||||||||    
T  18873425 acataaatttgatgctatcaaaccaccatcaattaatttgtataaccacttaatcagccaatttgaaaagctatttcattgaaagaatcac 18873515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 36718711 - 36718573
Alignment:
Q  13 ttttttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccactta 109  Q
    ||||||||||||||| |||| |||||  ||||||||||||| | |||| || |||| |||  | | ||||||||||||||| ||||||||||  || |||    
T  36718711 ttttttagtacacgtgtgagttttttttctagactctagttctcctttttgtacatgaatcggatcctatcaaaccacccctaatttgtataatcattta 36718612  T
Q  110 atcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||| |||||||| |||| ||||| ||| ||||||||||    
T  36718611 atcagtcaatttgtaaagttattttattgaaagaatcac 36718573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 12661219 - 12661367
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-------acataaatttggtgctatcaaaccacccccaatttgta 99  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| || ||| |        | ||||||  | | ||||||||||||| | ||||||||    
T  12661219 ttttctttctttagtacacgtttgagttttttctagactctagtttttttttttttttttgtatataaatcggattctatcaaaccacctctaatttgta 12661318  T
Q  100 tagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||  ||||||| || |||||||| |||||||||||||| ||||||||||    
T  12661319 taatcacttaaccagtcaatttggaaagctatttcattgaaagaatcac 12661367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 16515452 - 16515582
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    ||||||||| |||| ||||| || ||| ||||| | |||||| |||||||||||| |||||| ||| ||||  ||||||  |||  ||||||||||||||    
T  16515452 agtacacgtatgagctttttttaaactttagttctactttctagacataaatttgatgctattaaaacaccatcaattttaataatcacttaatcaatca 16515551  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||  ||||| ||| ||||||||||    
T  16515552 atttgaaaaattattttattgaaagaatcac 16515582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 13423850 - 13423922
Alignment:
Q  76 ctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||  || ||||||||||  ||||||||||||||||||  |||||||||||||| ||||||||||    
T  13423850 ctatcaaaccattcctaatttgtataatcacttaatcaatcaatttagaaagctatttcattgaaagaatcac 13423922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 40779127 - 40779239
Alignment:
Q  26 gtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaa 124  Q
    ||||||| |||||||||| ||||||| | |||||||| |||||||||| || |||||||| | ||||||||||||||  |  ||||| | ||||||||||    
T  40779127 gtttgagttttttctagagtctagttctcctttctgaacataaatttgatgttatcaaactatccccaatttgtataatcgtttaataagtcaatttgaa 40779226  T
Q  125 aagctatttcatt 137  Q
    || ||||| ||||    
T  40779227 aaactattccatt 40779239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 17325777 - 17325903
Alignment:
Q  24 acgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttg 122  Q
    |||| |||| ||||| ||||||||||||   ||||||| ||||||||||| |||||| |||| |||  | ||||| |||  |||||||||| ||||||||    
T  17325777 acgtatgagttttttttagactctagttccactttctggacataaatttgatgctattaaactaccatcgatttgaataatcacttaatcagtcaatttg 17325876  T
Q  123 -aaaagctatttcatttaaagaatcac 148  Q
     |||| |||||||||| ||||||||||    
T  17325877 aaaaaactatttcattgaaagaatcac 17325903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 37029096 - 37029051
Alignment:
Q  90 ccaatttgtatagccacttaatcaatcaatttgaaaagctatttca 135  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||    
T  37029096 ccaatttgtataatcacttaatcaatcaatttaaaaagctatttca 37029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 931354 - 931422
Alignment:
Q  64 ataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    ||||||||| |||||| ||| ||| |||||||||||||  |||||||||| |||||||  |||||||||    
T  931354 ataaatttgatgctattaaatcacacccaatttgtataatcacttaatcagtcaatttagaaagctatt 931422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 8379656 - 8379538
Alignment:
Q  20 gtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaa 118  Q
    |||||| |||||| ||||||||||||||  || |  ||| || |||||||| || || ||||||| |||||| ||||||||||   ||||||||||| ||    
T  8379656 gtacacatttgagttttttctagactctcattctcatttatggacataaatatgatgttatcaaatcacccctaatttgtataattacttaatcaattaa 8379557  T
Q  119 tttgaaaagctatttcatt 137  Q
    |||  |||| |||||||||    
T  8379556 tttcgaaagttatttcatt 8379538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 26311929 - 26312029
Alignment:
Q  16 tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatc 112  Q
    |||||||| |||||||| |||||  ||||| ||||||| |||||| || ||||||||  | | ||||||||||||||  ||||||||||  |||||||||    
T  26311929 tttagtactcgtttgagttttttttctagattctagttcttctttttgtacataaatcggatcctatcaaaccacccataatttgtataatcacttaatc 26312028  T
Q  113 a 113  Q
    |    
T  26312029 a 26312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 8398893 - 8398989
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgag-atttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgt 98  Q
    ||||||||||| |||||||||||||||||  ||||| |||||||||||| |  ||| || ||||||||  | | ||||||||||||||| |||||||    
T  8398893 tccttttctttctttagtacacgtttgagtttttttttagactctagttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgt 8398989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 27703684 - 27703535
Alignment:
Q  1 tacttccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgt 98  Q
    |||||| |||||||| ||||||||||||||||| |||||||||||||||||| |  ||| ||| |||||||||| |||||||||||||||||||||||||    
T  27703684 tacttctttttctttctttagtacacgtttgagttttttctagactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgt 27703585  T
Q  99 atagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||  |||||||||| |||||||| |||||||||||||  ||||||||||    
T  27703584 ataatcacttaatcagtcaatttggaaagctatttcatcgaaagaatcac 27703535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 5560411 - 5560541
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    |||||||||||||||||||| |||||| ||||| |  |||||| |||||||| |||||||| ||||||||||||||||||||||  |||||||||| |||    
T  5560411 agtacacgtttgagatttttttagactatagttctcatttctggacataaatctggtgctaccaaaccacccccaatttgtataatcacttaatcagtca 5560510  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    |||| ||||| ||||||||| ||||||||||    
T  5560511 atttaaaaagttatttcattgaaagaatcac 5560541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 12971336 - 12971464
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || |||| |||||||| || |  |||||||||||||||||||||||||  |||||||||| |||||    
T  12971336 tacacgtttgagttttttctagactttagttctcctatctggacataaatctgatattatcaaaccacccccaatttgtataatcacttaatcagtcaat 12971435  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||  ||||||||||    
T  12971436 ttgaaaagctatttcatcgaaagaatcac 12971464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 12884286 - 12884143
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||  |    
T  12884286 ttttctttctttagtacacgtttgagtttttttctagactctagttttcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatc 12884187  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||||    
T  12884186 acttaatcagtcaatttaaaaagctatttcattgaaagaatcac 12884143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 37873883 - 37873768
Alignment:
Q  34 tttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||||||||||||||||| | |||||| |||||||||||| |||||||||||||||  |||||||||||| |||||||||| | |||||||||| || ||    
T  37873883 tttttctagactctagttctactttctagacataaatttgatgctatcaaaccaccatcaatttgtatagtcacttaatcagttaatttgaaaaactgtt 37873784  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  37873783 tcattgaaagaatcac 37873768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 15441199 - 15441337
Alignment:
Q  1 tacttccttttcttttttag-tacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgt 98  Q
    |||||| |||||||| || | |||||||||||| |||||||||||||||||| | |||||| ||||||||| |  |||||||||||||||  ||||||||    
T  15441199 tacttctttttctttcttcgatacacgtttgagttttttctagactctagttctcctttctagacataaatataatgctatcaaaccacctacaatttgt 15441298  T
Q  99 atagccacttaatcaatcaatttgaaaagctatttcatt 137  Q
    |||  |||||||||| |||||||  ||||||||||||||    
T  15441299 ataatcacttaatcactcaatttataaagctatttcatt 15441337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 24556722 - 24556864
Alignment:
Q  7 cttttcttttttagtacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    ||||| || ||| |||||||| |||| ||||||||||||||| ||   |||||| | ||||||||||||||||| ||||||||  ||||||| |||  ||    
T  24556722 ctttttttctttggtacacgtatgagttttttctagactctaattccactttctcaacataaatttggtgctattaaaccaccatcaatttgaataatca 24556821  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||| | |||||||||||| |||||||||||||||||||||    
T  24556822 cttaataagtcaatttgaaaaactatttcatttaaagaatcac 24556864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 44836840 - 44836727
Alignment:
Q  36 tttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttc 134  Q
    |||||||| ||||||| | |||||||| |||||||||| |||||||||||||||  |||||||||||  |||||||||| |||||||||||| |||||||    
T  44836840 tttctagattctagttctactttctgaacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttc 44836741  T
Q  135 atttaaagaatcac 148  Q
    | | ||||||||||    
T  44836740 actgaaagaatcac 44836727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 17674495 - 17674360
Alignment:
Q  13 ttttttagtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaat 111  Q
    ||||| ||||||||| |||| ||||||||||||||||||   |||||| || ||||||||| |||||| ||||||||  ||||||| |||  ||||||||    
T  17674495 tttttcagtacacgtatgag-tttttctagactctagtttcactttctagatataaatttgatgctattaaaccaccatcaatttgaataatcacttaat 17674397  T
Q  112 caatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    || |||||||||||| |||||||||| ||||||||||    
T  17674396 cagtcaatttgaaaaactatttcattgaaagaatcac 17674360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 30899567 - 30899714
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtat 100  Q
    ||||||||||| ||||||||||||||||| |||||  ||||||||||||| | |||| || ||||||||  | | |||||||| |||||| |||||||||    
T  30899567 tccttttctttctttagtacacgtttgagttttttttctagactctagttctcctttttgtacataaatcggatcctatcaaatcacccctaatttgtat 30899666  T
Q  101 agccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |  |||||||| | |||||||| |||||||||||||| ||||||||||    
T  30899667 aatcacttaattagtcaatttggaaagctatttcattgaaagaatcac 30899714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 10109640 - 10109778
Alignment:
Q  13 ttttttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccactta 109  Q
    ||||||| |||||||||||| |||||  ||||||||||||| | |||| || ||||||||| | | ||||||||||||| | ||||||||||  ||||||    
T  10109640 ttttttattacacgtttgagttttttttctagactctagttctcctttttgtacataaattggatcctatcaaaccaccactaatttgtataatcactta 10109739  T
Q  110 atcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||| |||||||| ||||| |||||||| ||||||||||    
T  10109740 atcagtcaatttggaaagcaatttcattgaaagaatcac 10109778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 50552410 - 50552553
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttc-tagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| |||||  |||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||  |    
T  50552410 ttttctttctttagtacacgtttgagtttttttgtagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatc 50552509  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||  ||||||||||||| ||||||||| ||||||||||    
T  50552510 acttaatcggtcaatttgaaaagttatttcattgaaagaatcac 50552553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 51110250 - 51110107
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||||||| ||||||| |||| || ||||||||  | | ||||||||||||||| ||||| ||||  |    
T  51110250 ttttctttctttagtacacgtttgagtttttttctagactatagttatcctttttgtacataaatcggatcctatcaaaccacccctaatttctataatc 51110151  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||  |||||||||||||| ||||||||||    
T  51110150 acttaatcagtcaatttagaaagctatttcattgaaagaatcac 51110107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 25930515 - 25930662
Alignment:
Q  5 tccttttcttttttag-tacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtat 100  Q
    |||||||||||||| | |||||||||||| |||||  ||||||||||||| |  ||| || |||||||| || | ||||||||| ||||| |||||||||    
T  25930515 tccttttcttttttcggtacacgtttgagttttttgtctagactctagttctcatttttgtacataaatctgatcctatcaaactacccctaatttgtat 25930614  T
Q  101 agccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |  |||||||||| |||| |||||||||||||||||| |||| |||||    
T  25930615 aatcacttaatcagtcaacttgaaaagctatttcattgaaaggatcac 25930662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 50371080 - 50371192
Alignment:
Q  37 ttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttca 135  Q
    ||||||||||||||| | ||||||| | ||||| ||| |||||||||| ||||| |||||||||||  |||||||||| |||||||||||| || |||||    
T  50371080 ttctagactctagttctcctttctggatataaagttgatgctatcaaatcaccctcaatttgtataatcacttaatcagtcaatttgaaaaactgtttca 50371179  T
Q  136 tttaaagaatcac 148  Q
    || ||||||||||    
T  50371180 ttgaaagaatcac 50371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 6150664 - 6150779
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||||||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||| ||||  || ||||||| ||||||||||||||||||    
T  6150664 tttttctagactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttatataatcatttaatcagtcaatttgaaaagctatt 6150763  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  6150764 tcattgaaagaatcac 6150779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 42740048 - 42740166
Alignment:
Q  29 tgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaag 127  Q
    |||| |||||||||||||||||| | ||||||| |||||| |||| ||||||||||| |||  |||||||||||   ||||||| | ||||||||||||     
T  42740048 tgagttttttctagactctagttctactttctggacataagtttgatgctatcaaacaaccatcaatttgtataataacttaattagtcaatttgaaaaa 42740147  T
Q  128 ctatttcatttaaagaatc 146  Q
    |||||||||| ||||||||    
T  42740148 ctatttcattgaaagaatc 42740166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 48722524 - 48722376
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt---ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgta 99  Q
    ||||||||||| ||||||||||||||||| |||||   |||||||||| || |  ||| || ||||||||  | | ||||||||||||||| ||||||||    
T  48722524 tccttttctttctttagtacacgtttgagtttttttttctagactctatttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgta 48722425  T
Q  100 tagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||  |||||||||| |||||||| |||||||||||||| ||| ||||||    
T  48722424 taatcacttaatcagtcaatttggaaagctatttcattgaaataatcac 48722376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 1269475 - 1269609
Alignment:
Q  8 ttttctttttta-gtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||||||  ||||||||||||| ||||||||||||||| || | |||||| ||||||||| || |||||| |||||||||||||||||||          
T  1269475 ttttcttttttctgtacacgtttgagttttttctagactctaattctcctttctagacataaatctgatgctatgaaaccacccccaatttgta------ 1269568  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
       ||| | ||||||||||||||||||||||| ||||||||||    
T  1269569 --aaattagtcaatttgaaaagctatttcattaaaagaatcac 1269609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 3907381 - 3907528
Alignment:
Q  1 tacttccttttctttttt-agtacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgt 98  Q
    |||||| ||||||||||| ||||||||||| || ||||| |||||| || || |||||| ||| |||||||  | || ||||||||||| || |||||||    
T  3907381 tacttctttttctttttttagtacacgtttaagttttttttagactttattttttctttatgaacataaatacgatggtatcaaaccactcc-aatttgt 3907479  T
Q  99 atagccacttaatcaatcaatttgaaaagctatttcatttaaagaatca 147  Q
    |||  || ||||||||||||||||||||  ||||||||| |||||||||    
T  3907480 ataatcatttaatcaatcaatttgaaaaattatttcattgaaagaatca 3907528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 18128086 - 18127943
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt--ctagactctagttattctttctgacataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| |||||  ||||| ||||||| | ||||   || |||||  | | ||||||||||||||  ||||||||||  |    
T  18128086 ttttctttctttagtacacgtttgagttttttttctagattctagttctccttttgtacgtaaatcggatcctatcaaaccacccataatttgtataatc 18127987  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||||||||||||||||||  |||||||||    
T  18127986 acttaatcagtcaatttgaaaagctatttcattgcaagaatcac 18127943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 14084837 - 14084707
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    |||||| ||||||  |||||||||||||||||| | |||| || |||||||| || | |||||||| |||||| ||  ||||||  |||||||||| |||    
T  14084837 agtacaggtttgaattttttctagactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaaaatgtataatcacttaatcagtca 14084738  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    ||||  |||||||||||||| ||||||||||    
T  14084737 atttagaaagctatttcattgaaagaatcac 14084707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 20905438 - 20905293
Alignment:
Q  7 cttttcttt-tttagtacacgtttgagattt--ttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||| ||||||||||||||||| |||  ||||||||||||||| | |||| || |||||||| |  | ||||||||||| ||| ||||||||||     
T  20905438 cttttctttctttagtacacgtttgagttttatttctagactctagttctcctttttgtacataaatctaatcctatcaaaccagccctaatttgtataa 20905339  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||| ||| |||||||| ||  |||||||||| ||||||||||    
T  20905338 tcacttattcagtcaatttggaagtctatttcattgaaagaatcac 20905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 22386963 - 22386843
Alignment:
Q  29 tgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaag 127  Q
    |||| ||||||||||||||||||   || |||| ||||||||||| ||||||  |||||||  ||||||| | |  |||||||||| ||||||||||||     
T  22386963 tgagttttttctagactctagttccactgtctggacataaatttgatgctatttaaccaccatcaatttgaacaatcacttaatcagtcaatttgaaaaa 22386864  T
Q  128 ctatttcatttaaagaatcac 148  Q
    |||||||||| ||||||||||    
T  22386863 ctatttcattgaaagaatcac 22386843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 17487404 - 17487289
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||||||||||||||||| | |||| |  ||||||||  | | ||||||||||||||| ||||| ||||  |||||||| |||||||||| |||| ||||    
T  17487404 tttttctagactctagttctcctttttttacataaatcggatcctatcaaaccacccctaatttatataatcacttaataaatcaatttggaaagttatt 17487305  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  17487304 tcattgaaagaatcac 17487289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26486504 - 26486407
Alignment:
Q  16 tttagtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatc 112  Q
    |||||||||||| |||| |||||||| ||||||||| | |||||| || ||||||||| ||||||||||||| |  |||||||||||  |||||||||    
T  26486504 tttagtacacgtatgagttttttctaaactctagttctactttctggaaataaatttgatgctatcaaaccatcatcaatttgtataatcacttaatc 26486407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 33124784 - 33124636
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttct-agactcta--gttattctttctg-acataaatttggtgctatcaaaccacccccaatttgta 99  Q
    ||||||||||| ||||||||||||||||| ||||| | ||||||||  ||| | |||| |  ||||||||  | | |||| |||||||| | ||||||||    
T  33124784 tccttttctttctttagtacacgtttgagtttttttttagactctatagttctcctttttctacataaatcggatcctattaaaccacctctaatttgta 33124685  T
Q  100 tagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||  |||||||| | ||||||||||||||||||||||| ||||||||||    
T  33124684 taatcacttaataagtcaatttgaaaagctatttcattgaaagaatcac 33124636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 28885749 - 28885677
Alignment:
Q  76 ctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||  ||||||||||  ||||||||||||||||||  ||||||||||||||  |||||||||    
T  28885749 ctatcaaaccacccataatttgtataatcacttaatcaatcaattttgaaagctatttcattgtaagaatcac 28885677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 30004971 - 30004915
Alignment:
Q  90 ccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatc 146  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||||    
T  30004971 ccaatttgtataatcacttaatcaattaatttgaaaagctatttcattgaaagaatc 30004915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 20470640 - 20470708
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaattt 71  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| || ||||||||||    
T  20470640 tccttttctttctttagtacacgtttgagttttttctagactctaattatcctttttgtacataaattt 20470708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 52055566 - 52055610
Alignment:
Q  104 cacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  52055566 cacttaatcaatcaatttggaaagctatttcattgaaagaatcac 52055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 13120916 - 13120871
Alignment:
Q  104 cacttaatcaatcaatttgaaaagctatttcatttaaagaatcacc 149  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||    
T  13120916 cacttaatcagtcaatttgaaaaactatttcattgaaagaatcacc 13120871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 17487269 - 17487213
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaac 223  Q
    ||||||||||||| |||| | ||||| |||||| || ||||||||||||||||||||    
T  17487269 gcataaaccattcgttttatccttttccacaacagaggagtgacaaatccaaacaac 17487213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 9777387 - 9777458
Alignment:
Q  64 ataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttca 135  Q
    |||||| || ||||| ||||||||||||||||| ||||  |||| ||||| |||||||||| | ||||||||    
T  9777387 ataaatctgatgctaccaaaccacccccaatttatataatcactcaatcagtcaatttgaataactatttca 9777458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 29208175 - 29208104
Alignment:
Q  77 tatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||| ||||||||||  || ||||||| ||||| || ||  |||||||||| ||||||||||    
T  29208175 tatcaaaccacccctaatttgtataatcatttaatcagtcaatctggaagtctatttcattgaaagaatcac 29208104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 135
Target Start/End: Complemental strand, 32810401 - 32810370
Alignment:
Q  104 cacttaatcaatcaatttgaaaagctatttca 135  Q
    ||||||||||||||||||||||||||||||||    
T  32810401 cacttaatcaatcaatttgaaaagctatttca 32810370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 5560561 - 5560619
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    |||||||| |||||||||||  |||  ||||||||| |||||||||||||||| |||||    
T  5560561 gcataaactattcattttctcttttcccacaacggaggagtgacaaatccaaataacac 5560619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 28885657 - 28885599
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||||||||||| |||| |  |||| |||||| |||||||||||||||||||| ||||    
T  28885657 gcataaaccattcgttttatctttttccacaacagatgagtgacaaatccaaacgacac 28885599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 31369542 - 31369432
Alignment:
Q  2 acttccttttcttttttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtat 100  Q
    ||||| |||||||| || | ||| ||||||| |||||||| |||||| || | ||||||| |||||||| || || |||||||||||   ||||||||||    
T  31369542 acttctttttctttcttcgaacatgtttgagttttttctaaactctaattctcctttctggacataaatctgatgttatcaaaccactttcaatttgtat 31369443  T
Q  101 agccacttaat 111  Q
    |  ||||||||    
T  31369442 aatcacttaat 31369432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 12971484 - 12971536
Alignment:
Q  168 cataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaac 220  Q
    |||||||||||| |||||  ||||  |||||||||| ||||||||||||||||    
T  12971484 cataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaac 12971536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 12614866 - 12614722
Alignment:
Q  5 tccttttcttttttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagc 103  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||      
T  12614866 tccttttcttttttagtacacgtttgagttttttttagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataat 12614767  T
Q  104 cacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  12614766 cacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 12614722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 2618271 - 2618413
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||  ||    
T  2618271 ttttctttctttagtacacgtttgagttttttctagactttagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatca 2618370  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  2618371 cttaatcagtcaatttgaaaagctatttcattgaaagaatcac 2618413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 31860933 - 31861059
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| |||| |||| |||||||| ||||  |||||||||||||| ||||||||||   ||||||||| |||||    
T  31860933 tacacgtttgaggtttttctagactttagttcttctatctggacataaatctggta-tatcaaaccacccc-aatttgtataattacttaatcagtcaat 31861030  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  31861031 ttgaaaagctatttcattgaaagaatcac 31861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 3748661 - 3748574
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||| |||||||||||| ||  |||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||    
T  3748661 gacataaatttgatgctatcaaaccgccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatcac 3748574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 30915487 - 30915372
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||||||||||||||||| | ||||||| ||||||||||| |||||||||||| ||  |||||||||||   ||||||||| ||||||||||||||||||    
T  30915487 tttttctagactctagttctactttctggacataaatttgatgctatcaaacccccatcaatttgtataattacttaatcagtcaatttgaaaagctatt 30915388  T
Q  133 tcatttaaagaatcac 148  Q
    | ||| ||||||||||    
T  30915387 taattgaaagaatcac 30915372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 6754122 - 6754264
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| |||||||| |||||||| |||||||||| ||||||| |  ||| || ||||||||  | | ||||||||||| ||| ||||||||||| ||    
T  6754122 ttttctttctttagtacgcgtttgagttttttctagattctagttctcttttttgtacataaatcggatcctatcaaaccatccctaatttgtatagtca 6754221  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| |||||||| |||||||||||||| ||||||||||    
T  6754222 cttaatcagtcaatttggaaagctatttcattgaaagaatcac 6754264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 19231544 - 19231670
Alignment:
Q  22 acacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatt 120  Q
    ||||||||||| |||||||||| | ||||| | ||||||| |||||||| |||||||||||||| |||  ||||||||||| | ||||||||||||||||    
T  19231544 acacgtttgagttttttctagagtttagttctactttctggacataaatctggtgctatcaaactaccttcaatttgtatatc-acttaatcaatcaatt 19231642  T
Q  121 tgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||  |||| ||| ||||||    
T  19231643 tgaaaagctatgacattgaaaaaatcac 19231670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 6360676 - 6360817
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| |  ||| || ||||||||  | | ||||||||||||||  ||||||||||  ||    
T  6360676 ttttctttctttagtacacgtttgagttttttctagactctagttctcttttttgcacataaatcggatcctatcaaaccacccttaatttgtataatca 6360775  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| ||||||||||||| || |||||| ||||||||||    
T  6360776 cttaatcagtcaatttgaaaagtta-ttcattgaaagaatcac 6360817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 29308601 - 29308484
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||| ||| ||||| |||| |||| ||||||||||||| ||||||||||||  |||||| |||||   ||||||||| |||||    
T  29308601 tacacgtttgagttttttctaaactttagtttttctatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaat 29308502  T
Q  120 ttgaaaagctatttcatt 137  Q
    ||||||| ||||||||||    
T  29308501 ttgaaaaactatttcatt 29308484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 1690767 - 1690639
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattct-ttctgacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||| | | ||||| | || ||  ||||||||| |||| ||||||||||||| ||||||||||||  ||||| ||||||||||    
T  1690767 tacacgtttgagttttttctaaattttagttctcctatttggacataaatctggtactatcaaaccaccaccaatttgtataatcacttgatcaatcaat 1690668  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||  ||||||||| ||||||||||    
T  1690667 ttgaaaatttatttcattgaaagaatcac 1690639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 628172 - 628101
Alignment:
Q  77 tatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||| ||||||||||    
T  628172 tatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 628101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 3514999 - 3514856
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||| ||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||  |    
T  3514999 ttttctttctttagtacacgtttgagtttttttctaaactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataatc 3514900  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    || |||||| |||||||| |||||||| ||||| ||||||||||    
T  3514899 acgtaatcattcaatttggaaagctatatcattgaaagaatcac 3514856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 57616 - 57746
Alignment:
Q  20 gtacacgtttgagatttttct-agactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    ||||||||||||| ||||| | | ||||||||| | |||| || |||||||| || | ||||||||||||||  ||||||||||  |||||||||| |||    
T  57616 gtacacgtttgagtttttttttaaactctagttctcctttttgtacataaatctgatcctatcaaaccacccataatttgtataatcacttaatcagtca 57715  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    ||||  |||||||||||||| ||||||||||    
T  57716 atttagaaagctatttcattcaaagaatcac 57746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 7525306 - 7525172
Alignment:
Q  16 tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatca 113  Q
    ||||||||||||||||| ||||| ||||||||||||| | | || || ||||||||  | | ||||||||||||||  ||||||||||  ||||||||||    
T  7525306 tttagtacacgtttgagtttttttctagactctagttctccattttgtacataaatcggatcctatcaaaccacccataatttgtataatcacttaatca 7525207  T
Q  114 atcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||| |||| ||||| ||| ||||||||||    
T  7525206 gtcaatttggaaagttattttattgaaagaatcac 7525172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 29149324 - 29149461
Alignment:
Q  16 tttagtacacgtttgag----atttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaa 110  Q
    |||||||||||||||||     |||||||||||||||||| | |||| || ||||||||  | | |||||||||||| || ||||||||||  |||||||    
T  29149324 tttagtacacgtttgagttgtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacacctaatttgtataatcacttaa 29149423  T
Q  111 tcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||| |||||||| |||| || |||||| ||||||||||    
T  29149424 tcagtcaatttggaaagttagttcattgaaagaatcac 29149461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 1093169 - 1093058
Alignment:
Q  26 gtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaa 124  Q
    ||||||| |||||||||||| ||||| | || |||| ||||||||||||| ||||||||||||  |||||| |||||   ||| ||||| ||||||| ||    
T  1093169 gtttgagttttttctagactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgactaaatcagtcaatttaaa 1093070  T
Q  125 aagctatttcat 136  Q
    ||||||||||||    
T  1093069 aagctatttcat 1093058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 29401055 - 29401198
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| || |||||||||| |  ||| || ||||||||    | ||||||||| ||||| |||| |||||  |    
T  29401055 ttttctttctttagtacacgtttgagtttttttcttgactctagttttcatttttgtacataaatcgaatcctatcaaactacccctaattagtataatc 29401154  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||    
T  29401155 acttaatcagtcaatttgaaaagttatttcattgaaagaatcac 29401198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 11088465 - 11088591
Alignment:
Q  1 tacttccttttcttttttag-tacacgtttgagatttttctagactctagttattctttctgacataaatttggtgctatcaaaccacccccaatttgta 99  Q
    |||||| ||||||||||| | |||||||||||| ||||||||||||||| || | ||||  ||||||||| || ||||| ||||||||||||||||| ||    
T  11088465 tacttctttttcttttttcggtacacgtttgagttttttctagactctaattctccttt-ggacataaatctgatgctaccaaaccacccccaatttata 11088563  T
Q  100 tagccacttaatcaatcaatttgaaaagctatttca 135  Q
            |||||| |||||||||||||||||||||    
T  11088564 --------taatcagtcaatttgaaaagctatttca 11088591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 31234897 - 31234956
Alignment:
Q  74 tgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttca 135  Q
    ||||||||||||| ||  ||||||||||  ||||||||||||||||||||||||||||||||    
T  31234897 tgctatcaaaccatcc--aatttgtataatcacttaatcaatcaatttgaaaagctatttca 31234956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 31258609 - 31258541
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaattt 71  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| || ||||||||||    
T  31258609 tccttttctttctttagtacacgtttgagttttttctagactctaattatcctttttgtacataaattt 31258541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 14893507 - 14893423
Alignment:
Q  64 ataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||| || ||||||||||| || |  ||||||||||   ||||||||| |||||||||||| ||||||| || ||||||||||    
T  14893507 ataaatctgatgctatcaaacaactctgaatttgtataattacttaatcagtcaatttgaaaaactatttcgttaaaagaatcac 14893423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 21946109 - 21946161
Alignment:
Q  92 aatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaa 144  Q
    ||||||||||  |||||||||| || |||||||||||||||||||| ||||||    
T  21946109 aatttgtataatcacttaatcagtctatttgaaaagctatttcattgaaagaa 21946161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 350385 - 350459
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttca 135  Q
    ||||||||| || |||||||||||||||  |||||| ||||  |||| ||||| |||||||  ||||||||||||    
T  350385 gacataaatatgatgctatcaaaccaccatcaatttatataatcactcaatcagtcaatttcgaaagctatttca 350459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 6294189 - 6294275
Alignment:
Q  1 tacttccttttcttttttagtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaacca 86  Q
    |||||| ||| |||| || ||||| || |||| |||||||||||||||||| | |||| | | |||||||||| |||||||||||||    
T  6294189 tacttcttttactttcttggtacatgtatgagttttttctagactctagttctactttttgggcataaatttgatgctatcaaacca 6294275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 31244034 - 31244092
Alignment:
Q  74 tgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttca 135  Q
    ||||||||||||| ||  ||||||||||  ||||||||||||||| ||||||||||||||||    
T  31244034 tgctatcaaaccatcc--aatttgtataatcacttaatcaatcaa-ttgaaaagctatttca 31244092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 34524085 - 34523957
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || |||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||| |||||    
T  34524085 tacacgtttgagttttttctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaat 34523986  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  34523985 ttgaaaagctatttcattgaaagaatcac 34523957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 32098333 - 32098184
Alignment:
Q  1 tacttccttttctttttt-agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgt 98  Q
    |||||| |||||||| || |||||||||||||| |||||||||||||||||||| |||| || ||||||||||| |||||||||||||| |  |||||||    
T  32098333 tacttctttttctttcttcagtacacgtttgagttttttctagactctagttatcctttttggacataaatttgatgctatcaaaccactcttaatttgt 32098234  T
Q  99 atagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||   |||||||||| |||||||| ||| |||||||||| ||||||||||    
T  32098233 atgatcacttaatcagtcaatttggaaaactatttcattgaaagaatcac 32098184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 43968222 - 43968076
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | |||||||||||| || ||||||||||    
T  43968222 tccttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccactcctaatttgtata 43968123  T
Q  102 gccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
      |||||||||||||||||||||||| ||||||||| ||||||||||    
T  43968122 atcacttaatcaatcaatttgaaaagttatttcattgaaagaatcac 43968076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 3628894 - 3628753
Alignment:
Q  8 ttttcttttttagtacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccac 106  Q
    ||||||| || ||||||||| |||| |||||||||||||||||| | | |||||  |||||||||| |||||||||||||||   ||||||||||  |||    
T  3628894 ttttcttcttcagtacacgtatgagttttttctagactctagttctacattctggtcataaatttgatgctatcaaaccaccattaatttgtataatcac 3628795  T
Q  107 ttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||| ||||||||||||| ||||||||| ||||||||||    
T  3628794 ataatcagtcaatttgaaaagttatttcattgaaagaatcac 3628753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 39698072 - 39697944
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || ||| | |||||||||||| ||||||||||||| |||||||||||   || ||||| | |||||    
T  39698072 tacacgtttgagttttttctagactttagttctcctatcttggcataaatttggtactatcaaaccaccaccaatttgtatgatcatttaattagtcaat 39697973  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  39697972 ttgaaaagctatttcattgaaagaatcac 39697944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 23567408 - 23567280
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| |  | ||||| ||||||| || | ||||||||||||||||||||||||||  |||||||||| |||||    
T  23567408 tacacgtttgaggtttttctagactttagttctcttatctgaacataaatctgctactatcaaaccacccccaatttgtataatcacttaatcagtcaat 23567309  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||  |||||||||| |||| |||||    
T  23567308 ttgaaatactatttcattgaaagtatcac 23567280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 7858000 - 7858143
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| ||| |||||||  | | |||||||| |||||| ||||||||||  |    
T  7858000 ttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgaacataaatcggatcctatcaaatcacccctaatttgtataatc 7858099  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||| |||| || |||||||||||||||||    
T  7858100 acttaatcagtcaatttggaaagttaattcatttaaagaatcac 7858143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 13585214 - 13585357
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||  |    
T  13585214 ttttctttctttagtacacgtttgagtttttttctagactctagttttcttttttgtacataaatcagatcctatcaaaccacccctaatttgtataatc 13585313  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    | ||||||| |||||||| |||||||||||||| ||||||||||    
T  13585314 aattaatcagtcaatttggaaagctatttcattgaaagaatcac 13585357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 3471572 - 3471658
Alignment:
Q  62 acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| || | ||||||||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||| ||||||||||    
T  3471572 acataaatgtgattctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 3471658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 12531489 - 12531617
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || || || ||||||| | || ||||||||| ||| ||||||||||||  |||||||||| |||||    
T  12531489 tacacgtttgagttttttctagactttagttctcctatccgaacataaatcttgtactatcaaactacctccaatttgtataatcacttaatcagtcaat 12531588  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    || |||| |||||||||| ||||||||||    
T  12531589 ttaaaaatctatttcattgaaagaatcac 12531617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 43926464 - 43926329
Alignment:
Q  16 tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatc 112  Q
    ||||||||||||||||| |||||  ||||||||||||| | |||| || | ||||||  | | ||||||||||||||  ||||||||||   ||||||||    
T  43926464 tttagtacacgtttgagttttttttctagactctagttctactttttgtatataaatcggatcctatcaaaccacccataatttgtataattacttaatc 43926365  T
Q  113 aatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    | ||||||||||||||||||||||| ||||||||||    
T  43926364 agtcaatttgaaaagctatttcattgaaagaatcac 43926329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 18420758 - 18420615
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| | ||||||||||| | |||| || ||||||||  | | |||||||||||| |  ||||||||||  |    
T  18420758 ttttctttctttagtacacgtttgagtttttttccagactctagttctcctttttgtacataaatcagatcctatcaaaccacacttaatttgtataatc 18420659  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||    
T  18420658 acttaatcagtcaatttgaaaagctgtttcattgaaagaatcac 18420615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 5869456 - 5869328
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    |||||||| ||||| ||||| |||||| ||||| | ||||||| ||||||||| | | ||||||||||||| | ||||| || |  |||||||||| |||    
T  5869456 agtacacgattgagttttttttagactttagttctcctttctgtacataaatt-gatactatcaaaccaccac-aatttttaaaatcacttaatcagtca 5869359  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||||| ||||||||||    
T  5869358 atttgaaaagctatttcattgaaagaatcac 5869328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 35874852 - 35874970
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccac--ccccaatttgtatagccacttaatcaat 115  Q
    ||||||||| |||| |||||||||||||||||| | |||||| || ||||||||| ||||||||||||||     |||||||||||  |||||||||  |    
T  35874852 agtacacgtatgagttttttctagactctagttctactttctggatataaatttgatgctatcaaaccactatatcaatttgtataatcacttaatcggt 35874951  T
Q  116 caatttgaaaagctatttc 134  Q
    ||||||||||| |||||||    
T  35874952 caatttgaaaaactatttc 35874970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 30915409 - 30915305
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    ||||| ||||||||| || | ||||||| ||||| || || ||||| |||||| || ||||| ||||||  |||||||||| ||||||||||||||||||    
T  30915409 tttttttagactctaattctcctttctggacatagatctgatgctaccaaacctcctccaatatgtataatcacttaatcagtcaatttgaaaagctatt 30915310  T
Q  133 tcatt 137  Q
    |||||    
T  30915309 tcatt 30915305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 42951847 - 42951775
Alignment:
Q  76 ctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||| || ||||||||||  |||||||||| ||||||||||||| ||||| ||| ||||||||||    
T  42951847 ctatcaaaccactcctaatttgtataatcacttaatcagtcaatttgaaaagttattttattgaaagaatcac 42951775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 27074546 - 27074632
Alignment:
Q  62 acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| || | ||||||||||||||| ||||||||||  |||||||||| ||||||| |||  |||||||||| ||| ||||||    
T  27074546 acataaatctgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaagtctatttcattgaaaaaatcac 27074632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 18112103 - 18112174
Alignment:
Q  77 tatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||| || ||||||||||  |||||||||| |||||||| ||| |||||| ||| ||||||||||    
T  18112103 tatcaaaccactcctaatttgtataatcacttaatcagtcaatttggaaaactattttattgaaagaatcac 18112174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 33452728 - 33452834
Alignment:
Q  26 gtttgagatttttctagactctagttattctttctgacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaa 125  Q
    ||||||| ||||||||||||||| || | ||||  ||||||||| |  || |||||||||||| ||||||| ||||  |||| ||| |||||||||||||    
T  33452728 gtttgagttttttctagactctaattct-cttttggacataaatcttatggtatcaaaccacctccaatttatataatcactcaattaatcaatttgaaa 33452826  T
Q  126 agctattt 133  Q
    || |||||    
T  33452827 agttattt 33452834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 44665167 - 44665052
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    ||||| |||||||||||| | |||| || ||||||||  | | ||||||||||||| | |||||||||   |||||||||| || ||||| |||| ||||    
T  44665167 tttttatagactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtatcatcacttaatcagtctatttggaaagttatt 44665068  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  44665067 tcattgaaagaatcac 44665052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 42076092 - 42076165
Alignment:
Q  74 tgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatca 147  Q
    ||||||||||| | |  |||||||||||   |||||||||||||||||||||||||||  |||| |||||||||    
T  42076092 tgctatcaaactatcatcaatttgtataataacttaatcaatcaatttgaaaagctataacattgaaagaatca 42076165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 42777683 - 42777761
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgt 98  Q
    |||||||||||  |||||||||| |||| || | ||||||  |||||||| || || ||||||||||||||||||||||    
T  42777683 tacacgtttgaattttttctagattctaattctcctttctatacataaatatgatgatatcaaaccacccccaatttgt 42777761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 3575175 - 3575142
Alignment:
Q  119 tttgaaaagctatttcatttaaagaatcacctaa 152  Q
    ||||||||||||||||||| ||||||||||||||    
T  3575175 tttgaaaagctatttcattgaaagaatcacctaa 3575142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 43968056 - 43968003
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaac 220  Q
    ||||||||||||| ||||  |||||| |||||| || |||||||||||||||||    
T  43968056 gcataaaccattcgttttactcttttccacaacagaggagtgacaaatccaaac 43968003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 34523936 - 34523880
Alignment:
Q  169 ataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||||||||| |||||  ||||  |||||||||| |||||||||||||||| ||||    
T  34523936 ataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaacgacac 34523880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 26282676 - 26282548
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | || |||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||| |||||    
T  26282676 tacacgtttgagttttttctagactttagttctcctatctgcacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaat 26282577  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  26282576 ttgaaaagctatttcattgaaagaatcac 26282548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 40001830 - 40001702
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| |||| ||||| ||||||| |||| ||||||||||||| ||||||||||||  |||||||||| |||||    
T  40001830 tacacgtttgaggtttttctagactttagttcttctatctgaacataaatctggtactatcaaaccacctccaatttgtataatcacttaatcagtcaat 40001731  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  40001730 ttgaaaagctatttcattgaaagaatcac 40001702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 18015733 - 18015588
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||     
T  18015733 tccttttctttctttagtacatgtttgagttttttctagactctagttttcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa 18015634  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     ||||||||||||||||||| |||||||||||||| ||||||||||    
T  18015633 tcacttaatcaatcaatttggaaagctatttcattgaaagaatcac 18015588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 26633292 - 26633421
Alignment:
Q  20 gtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaa 118  Q
    |||||||| |||| |||||||||||||||||| | ||||||| ||||||||||| |||||| ||||||||  |||||||||||  |||||||||| ||||    
T  26633292 gtacacgtatgagttttttctagactctagttctactttctggacataaatttgatgctataaaaccaccatcaatttgtataatcacttaatcagtcaa 26633391  T
Q  119 tttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||||||| ||||||||||    
T  26633392 tttgaaaagctatttcattgaaagaatcac 26633421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 6380225 - 6380090
Alignment:
Q  16 tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatc 112  Q
    ||||||||||||||||| |||||  ||||||||||||| |||||| || |||| ||| || | ||||||||||||||| ||||||||||  |||||||||    
T  6380225 tttagtacacgtttgagttttttttctagactctagttcttctttttgtacatgaatctgatcctatcaaaccacccctaatttgtataatcacttaatc 6380126  T
Q  113 aatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||| ||  |||||||||| ||||||||||    
T  6380125 aatcaatttggaagtctatttcattgaaagaatcac 6380090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 33909992 - 33910122
Alignment:
Q  20 gtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    ||||||||||||| ||||| ||||||||||||| | |||| || |||||||| || | |||||||| |||||| ||||||||||  | |||||||| |||    
T  33909992 gtacacgtttgagtttttttctagactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaatttgtataatcgcttaatcagtca 33910091  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||||| ||||||||||    
T  33910092 atttgaaaagctatttcattgaaagaatcac 33910122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 36438487 - 36438357
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    |||||| || |||| ||||||||| |||||||| | ||||||| ||||||||||| ||||||||||||||   |||||||||||  |||||||||| |||    
T  36438487 agtacaggtatgagttttttctaggctctagttctactttctggacataaatttgatgctatcaaaccactatcaatttgtataatcacttaatcagtca 36438388  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| | |||||||| ||||||||||    
T  36438387 atttgaaaaaccatttcattgaaagaatcac 36438357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 44894169 - 44894035
Alignment:
Q  16 tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatca 113  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||||| || ||||||||  | | |||| |||||||||| ||||||||||  ||||||||||    
T  44894169 tttagtacacgtttgagtttttttctagactatagttcttctttttgtacataaatcggatcctattaaaccacccctaatttgtataatcacttaatca 44894070  T
Q  114 atcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||||| ||| ||||||||||    
T  44894069 atcaatttggaaagctattttattgaaagaatcac 44894035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 4099880 - 4100023
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtat 100  Q
    ||||||||||| ||||||||||||||||| |||||  |||||| ||| || | |||| || ||||||||  | | ||||||||||||||| |||||||||    
T  4099880 tccttttctttctttagtacacgtttgagttttttttctagacgctaattctcctttttgtacataaatcggat-ctatcaaaccacccctaatttgtat 4099978  T
Q  101 agccacttaatcaatcaatttgaaaagctatttcatttaaagaat 145  Q
    |  |||||||||||||||||||||||||||||||||| |||||||    
T  4099979 aatcacttaatcaatcaatttgaaaagctatttcattgaaagaat 4100023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 32956703 - 32956911
Alignment:
Q  20 gtacacgtttgagatttttct-agactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    ||||||||||||| ||||| | ||||||||||| | ||||||| |||||||| || ||||||||||||||||||||||| ||||  || ||||||| |||    
T  32956703 gtacacgtttgagtttttttttagactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatttttataatcatttaatcagtca 32956802  T
Q  118 atttgaaaagctatttcatttaaagaatcacctaannnnnnnnnnnnnngcataaaccattcattttcttctttttcacaacggatgagtgacaaatcca 217  Q
    ||||  |||| ||||||||| ||||||||||   |              ||||||||||||| |||||  ||||  ||||||||||||||||||||||||    
T  32956803 atttataaagttatttcattgaaagaatcacaacaatgatttctttttcgcataaaccattcgttttcccctttcccacaacggatgagtgacaaatcca 32956902  T
Q  218 aacaacact 226  Q
    ||| |||||    
T  32956903 aacgacact 32956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 9479052 - 9479185
Alignment:
Q  16 tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaa 114  Q
    |||| ||||||| |||  |||||||| ||||||||| | ||||||| ||||||||||| |||||||||||||||  |||||||||||   |||||||||     
T  9479052 tttaatacacgtatgatttttttctaaactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcag 9479151  T
Q  115 tcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| |||| ||||||| || ||||||||||    
T  9479152 tcaatttaaaaaactatttcgttgaaagaatcac 9479185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 40738126 - 40737997
Alignment:
Q  20 gtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaa 118  Q
    |||| ||| |||| |||||||| ||||||||| | |||| | |||||||||||| |||||||||||||||  |||||||||||   ||||||||| ||||    
T  40738126 gtacgcgtatgagttttttctaaactctagttctacttttttgacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaa 40738027  T
Q  119 tttgaaaagctatttcatttaaagaatcac 148  Q
    ||| ||||||||||| ||| ||||||||||    
T  40738026 tttaaaaagctattttattgaaagaatcac 40737997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 1365939 - 1366067
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| || ||||||||| ||||| | || |||| ||||||||||||| ||||||||||||  |||||| |||||   ||||||||| |||||    
T  1365939 tacacgtttgagtttcttctagactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaat 1366038  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| ||||||||  ||||||||||    
T  1366039 ttgaaaagttatttcatagaaagaatcac 1366067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 33419270 - 33419123
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| |||| |||||||||||| ||||| ||||||||||||| || ||| || ||||||||  | | ||||||||| ||||| ||||||||||    
T  33419270 tccttttctttctttaatacacgtttgagtttttttctagactctagttcttgtttttgtacataaatcggatcctatcaaactacccctaatttgtata 33419171  T
Q  102 gccacttaatcaa-tcaatttgaaaagctatttcatttaaagaatcac 148  Q
      |||||||| || ||||||||||||| ||||||||| ||||||||||    
T  33419170 atcacttaattaagtcaatttgaaaagttatttcattgaaagaatcac 33419123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 7636404 - 7636334
Alignment:
Q  76 ctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatc 146  Q
    ||||||||||||||| ||||||||||   ||||||||| ||||||||||||||||||||||| ||||||||    
T  7636404 ctatcaaaccacccctaatttgtataattacttaatcagtcaatttgaaaagctatttcattgaaagaatc 7636334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 30739031 - 30739181
Alignment:
Q  1 tacttccttttcttttttag-tacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttg 97  Q
    |||||| ||||||||||| | |||||||||||| ||||| ||||| || | || | ||||||| ||||||||  | ||||||||||||| |  ||||||     
T  30739031 tacttctttttcttttttcggtacacgtttgagtttttttctagattccaattctcctttctggacataaatcggatgctatcaaaccatcttcaatttt 30739130  T
Q  98 tatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||  |||||||||| ||||||||||||| ||||||||| ||||||||||    
T  30739131 tataatcacttaatcagtcaatttgaaaagttatttcattaaaagaatcac 30739181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 8358443 - 8358300
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttt-tctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||| ||||||||| |||| |||||||| ||||| | |||| || ||||||||  | | ||||||||||||||| ||||| ||||  |    
T  8358443 ttttctttctttagtatacgtttgagtttttctctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttatataatc 8358344  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| ||||||| ||||| ||| ||||| ||||||||||    
T  8358343 acttaatcagtcaatttaaaaagttatctcattgaaagaatcac 8358300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 46221852 - 46221709
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||| ||||||||| ||||| ||||||||||||| |  ||| || ||||||||    | ||||||||| ||||| |||||||| |  |    
T  46221852 ttttctttctttagtatacgtttgagtttttttctagactctagttctcttttttgtacataaatcgaatcctatcaaactacccctaatttgtagaatc 46221753  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  46221752 acttaatcagtcaatttggaaagctatttcattgaaagaatcac 46221709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 36796512 - 36796378
Alignment:
Q  16 tttagtacacgtttgagatttttctagac-tctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatca 113  Q
    ||||||||||||||||| ||||||||||| ||||||| | |||| || ||||||||  | | ||||||||| ||||  ||||||||||   |||||||||    
T  36796512 tttagtacacgtttgagttttttctagacttctagttctcctttttgtacataaatcggatcctatcaaactacccttaatttgtataataacttaatca 36796413  T
Q  114 atcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||| |||  ||||||||| ||||||||||    
T  36796412 gtcaatttggaaaattatttcattgaaagaatcac 36796378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 42161271 - 42161126
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctat--caaaccacccccaatttgtatag 102  Q
    |||||||| ||||||||||||||||| ||||| |||||||||| || |  ||| || ||||||||| | | ||||  ||||||||||| ||||||||||     
T  42161271 ttttctttctttagtacacgtttgagtttttttctagactctaattctcatttttgtacataaattggatcctatatcaaaccacccctaatttgtataa 42161172  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     ||||| |||| | |||||| |||||||||||||| ||||||||||    
T  42161171 tcacttgatcagttaatttggaaagctatttcattgaaagaatcac 42161126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 25061833 - 25061957
Alignment:
Q  20 gtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaa 118  Q
    |||||||||| | |||||| |||||||||||| |||||| || |||||||| || ||||||||||| |  | ||||||||| |  ||||| |||| | ||    
T  25061833 gtacacgtttta-atttttttagactctagttcttctttttggacataaatctgatgctatcaaactattctcaatttgtacaatcactttatcagttaa 25061931  T
Q  119 tttgaaaagctatttcatttaaagaa 144  Q
    ||||||||||||||||||| ||||||    
T  25061932 tttgaaaagctatttcattgaaagaa 25061957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 42311943 - 42312067
Alignment:
Q  24 acgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttg 122  Q
    ||||||||| ||||||||||||||| || |  |||||| |||||||| || || || ||||| |||| | |||||||||  ||||| || | ||||||||    
T  42311943 acgtttgagttttttctagactctaattctcttttctggacataaatctgatgtta-caaactaccctcgatttgtataatcacttgattagtcaatttg 42312041  T
Q  123 aaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||| ||||||||||    
T  42312042 aaaagctatttcattaaaagaatcac 42312067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 773974 - 773890
Alignment:
Q  64 ataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||| || |||||||||| |||||| ||||||||||   |||| |||| ||||||||||||||||||| ||| ||||||||||    
T  773974 ataaatctgatgctatcaaatcacccctaatttgtataattactttatcagtcaatttgaaaagctattttattgaaagaatcac 773890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 18895531 - 18895403
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    ||||||| |||| ||||||||||||| |||| | |||  | |||||||||||| || |||||||||||    ||||||||||  || ||||||| |||||    
T  18895531 tacacgtatgagttttttctagactcgagttctacttattagacataaatttgatgttatcaaaccactattaatttgtataatcaattaatcagtcaat 18895432  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    || ||||| ||||||||| ||||||||||    
T  18895431 ttaaaaagttatttcattgaaagaatcac 18895403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 11672499 - 11672644
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg---acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||||| | |||| ||   | ||||||  | | |||||||||||| || ||||||||||     
T  11672499 ttttctttctttagtacacatttgagtttttttctagactctagttctcctttttgtacatataaatcggatcctatcaaaccactcctaatttgtataa 11672598  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||||| |||||||| |||| ||||||| | ||||||||||    
T  11672599 tcacttaatcagtcaatttggaaagttatttcaatgaaagaatcac 11672644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 12251365 - 12251294
Alignment:
Q  77 tatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||| ||||| ||||  || ||||||| |||||||| |||||||||||||| ||||||||||    
T  12251365 tatcaaaccacccctaatttctataatcatttaatcagtcaatttggaaagctatttcattgaaagaatcac 12251294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 40841399 - 40841298
Alignment:
Q  3 cttccttttctttttt-agtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacc-cccaatttgta 99  Q
    |||| |||||||| || |||||| ||||||| ||||||||||||||| ||||||||| | ||||||||| || || |||||||||||| || ||||||||    
T  40841399 cttctttttctttcttcagtacatgtttgagttttttctagactctaattattctttttggacataaatatgatgttatcaaaccacctcctaatttgta 40841300  T
Q  100 ta 101  Q
    ||    
T  40841299 ta 40841298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 7366609 - 7366745
Alignment:
Q  13 ttttttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaat 111  Q
    ||||| || |||||| |||| |||||||| |||||||||   ||||||| ||||||||||| || ||| ||||||||  ||||||| |||   |||||||    
T  7366609 tttttcagcacacgtatgagttttttctatactctagttccactttctggacataaatttgatgatattaaaccaccatcaatttgaataattacttaat 7366708  T
Q  112 caatcaatttgaaaagctatttcatttaaagaatcac 148  Q
       |||||||||||| |||||| ||| ||||||||||    
T  7366709 ttgtcaatttgaaaaactattttattgaaagaatcac 7366745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 12251536 - 12251492
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagtt 51  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  12251536 ttttctttctttagtacacgtttgagttttttctagactctagtt 12251492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 35654114 - 35653986
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    ||||||| |||| |||||||||||||||||| | ||||||| |||||||| || |||||||||||||||  |||||||||||  ||||||||||||||||    
T  35654114 tacacgtatgagttttttctagactctagttctactttctggacataaatatgatgctatcaaaccaccatcaatttgtataatcacttaatcaatcaat 35654015  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  35654014 ttgaaaagctatttcattgaaagaatcac 35653986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 22423613 - 22423741
Alignment:
Q  20 gtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaa 118  Q
    |||||||| |||| |||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||  ||||||||||   |||||||||||||||    
T  22423613 gtacacgtatgagttttttctagactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtatgatcacttaatcaatcaa 22423712  T
Q  119 tttgaaaagctatttcatttaaagaatca 147  Q
    |||||||| |||||| ||| |||||||||    
T  22423713 tttgaaaaactattttattgaaagaatca 22423741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 5545261 - 5545387
Alignment:
Q  23 cacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaattt 121  Q
    |||||||||| ||||||||||||||| || |||| |||| ||||||||||| ||| ||||||||||| ||||||||||||  |||||||||  |||||||    
T  5545261 cacgtttgagttttttctagactctaattcttctgtctggacataaatttgatgccatcaaaccaccaccaatttgtataatcacttaatcggtcaattt 5545360  T
Q  122 gaaaagctatttcatttaaagaatcac 148  Q
    | |||||||||||||| ||||||||||    
T  5545361 ggaaagctatttcattaaaagaatcac 5545387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 21791683 - 21791553
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    |||||| ||||||| |||||||||||||||||| | |||||||| |||||||||| ||| |||||||||||  |||| ||||||  |||||||||| |||    
T  21791683 agtacatgtttgagttttttctagactctagttctcctttctgaacataaatttgatgccatcaaaccaccttcaatgtgtataatcacttaatcagtca 21791584  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||| ||||||||| ||||||||||    
T  21791583 atttgaaaagttatttcattgaaagaatcac 21791553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 32130938 - 32130796
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| |||||||| |||||||| ||||||||||| |||||| |||||| || ||||||||  | | ||||||||||||||| ||||||||||  ||    
T  32130938 ttttctttctttagtacccgtttgagttttttctagacactagttcttctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatca 32130839  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| |||||||||||| |||||||||| ||||||||||    
T  32130838 cttaatcagtcaatttgaaaaactatttcattgaaagaatcac 32130796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 19661292 - 19661433
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||     
T  19661292 tccttttctttctttagtacacgtttgagttttttctagactctagttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataa 19661391  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaa 144  Q
     |||||||||| |||||||| |||||||||||||| ||||||    
T  19661392 tcacttaatcagtcaatttggaaagctatttcattgaaagaa 19661433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 43154936 - 43154794
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| ||||| |||||| |||| |||||||||| ||||||| | |||| || ||||||||||| |||||||||||||||  |||||||||||  ||    
T  43154936 ttttctttctttaggacacgtatgagttttttctagattctagttctactttttggacataaatttgatgctatcaaaccaccatcaatttgtataatca 43154837  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| ||||||| ||||| ||||||||| ||||||||||    
T  43154836 cttaatcagtcaatttaaaaagttatttcattaaaagaatcac 43154794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 53011628 - 53011770
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| ||||||||||||||||| |||||||| |||||| || | |||| || ||||||||  | | ||||||||||||||| ||||||||||  ||    
T  53011628 ttttctttctttagtacacgtttgagttttttctaaactctaattctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataatca 53011727  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| |||||||| |||||||||||||| ||||||||||    
T  53011728 cttaatcagtcaatttggaaagctatttcattaaaagaatcac 53011770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 23256508 - 23256652
Alignment:
Q  5 tccttttcttttttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagc 103  Q
    ||||||||||| ||||||||| |||||| ||||| ||||||| |||| | |||| || ||||||||  | | ||||||||||||||| |||||||||| |    
T  23256508 tccttttctttcttagtacacatttgagttttttttagactccagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataac 23256607  T
Q  104 cacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||| |||||||  |||||||||||| | ||||||||||    
T  23256608 cacttaatcagtcaatttagaaagctatttcaatgaaagaatcac 23256652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 34982154 - 34982282
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| |||| |||| |||||||| |||| ||| ||||||| ||||||||||||||  |||||||||| |||||    
T  34982154 tacacgtttgagttttttctagactttagtttttctatctggacataaatctggtactaacaaaccatccccaatttgtataatcacttaatcagtcaat 34982253  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    | ||||| ||||||| || ||||||||||    
T  34982254 tggaaaaactatttcgttgaaagaatcac 34982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 27632325 - 27632456
Alignment:
Q  19 agtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatc 116  Q
    |||||||||||||| ||||| ||||| ||||||| | |||| || ||||||||||| | ||||||||||||||| ||||||||||  |||||||| | ||    
T  27632325 agtacacgtttgagtttttttctagattctagttctcctttttgtacataaatttgatcctatcaaaccacccctaatttgtataatcacttaattagtc 27632424  T
Q  117 aatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||| |||||| ||||||||||    
T  27632425 aatttgaaaagctacttcattgaaagaatcac 27632456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 28463740 - 28463594
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| ||||||| ||||||||| ||||| ||||||||||||| | |||| || ||||||||  | |  |||||||||||||| ||||||||||    
T  28463740 tccttttctttctttagtaaacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcttatcaaaccacccctaatttgtata 28463641  T
Q  102 gccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
      ||||||||||||||| |||||||||||||||||| ||| ||||||    
T  28463640 atcacttaatcaatcaagttgaaaagctatttcattgaaaaaatcac 28463594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 23426316 - 23426172
Alignment:
Q  7 cttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagc 103  Q
    ||||||||| ||||||| ||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | ||||||||||||| | ||||||||||      
T  23426316 cttttctttctttagtatacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtataat 23426217  T
Q  104 cacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||    
T  23426216 cacttaatcagtcaatttggaaagctatttcattgaaagaatcac 23426172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 45172778 - 45172651
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | |  |||| |||||||| |||| ||||||||||||||  ||||||||||  |||||||||| |||||    
T  45172778 tacacgtttgagttttttctagactttagttctccaatctggacataaatctggtactatcaaaccaccct-aatttgtataatcacttaatcagtcaat 45172680  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||  ||||||||||    
T  45172679 ttgaaaagctatttcatggaaagaatcac 45172651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 55134138 - 55134266
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| ||||| |||||| ||||| |  | |||| ||||||||||||| ||||||||||||  |||||| |||||   ||||||||| |||||    
T  55134138 tacacgtttgagttttttgtagactttagttctcttatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaat 55134237  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||  ||||||||||    
T  55134238 ttgaaaagctatttcatagaaagaatcac 55134266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 11681893 - 11681748
Alignment:
Q  7 cttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg--acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| |   ||||||||  | | ||||||||||||||| ||||| ||||     
T  11681893 cttttctttctttagtacacgtttgagtttttttctagactctagttctccttttttttacataaatcggatcctatcaaaccacccctaatttttataa 11681794  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||||| |||||||| |||| ||||||||| ||||||||||    
T  11681793 tcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 11681748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 11690172 - 11690027
Alignment:
Q  7 cttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg--acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| |   ||||||||  | | ||||||||||||||| ||||| ||||     
T  11690172 cttttctttctttagtacacgtttgagtttttttctagactctagttctccttttttttacataaatcggatcctatcaaaccacccctaatttttataa 11690073  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||||| |||||||| |||| ||||||||| ||||||||||    
T  11690072 tcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 11690027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 24449052 - 24449170
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccac--ccccaatttgtatagccacttaatcaat 115  Q
    ||||||||| |||| |||||||||||||||||| | |||||| || ||||||||| ||||||||||||||     |||||||||||  |||||||||  |    
T  24449052 agtacacgtatgagttttttctagactctagttctactttctggatataaatttgatgctatcaaaccactatatcaatttgtataatcacttaatcggt 24449151  T
Q  116 caatttgaaaagctatttc 134  Q
    ||||||||||| |||||||    
T  24449152 caatttgaaaaactatttc 24449170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 44477962 - 44478097
Alignment:
Q  16 tttagtacacgtttgagattttt-ctagact-ctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatc 112  Q
    ||||||||||||||||| ||||| ||| ||| ||||||||  ||| || ||||||||  | | ||||||||||||||  ||||||||||  |||| ||||    
T  44477962 tttagtacacgtttgagtttttttctaaacttctagttatcatttttgtacataaatcagatcctatcaaaccacccataatttgtataatcactaaatc 44478061  T
Q  113 aatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    | |||||||| |||||||||||||| ||||||||||    
T  44478062 agtcaatttggaaagctatttcattgaaagaatcac 44478097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 10575646 - 10575529
Alignment:
Q  29 tgagatttttctagactctagttattctttctgacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagc 128  Q
    |||| |||||||| ||||||||| || |||   ||||||||||  |||||||||||||||| ||| |||||||  |||||||||| |||||||  ||||     
T  10575646 tgagttttttctaaactctagttctttttta--acataaattttatgctatcaaaccaccctcaacttgtataatcacttaatcagtcaatttagaaagt 10575549  T
Q  129 tatttcatttaaagaatcac 148  Q
    ||||||||| ||| ||||||    
T  10575548 tatttcattgaaataatcac 10575529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 29579823 - 29579938
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||||||||||||||||| |  ||| || |||||||| || | ||||||||||||||  ||||||||||   | ||||||| |||| |||||||||||||    
T  29579823 tttttctagactctagttctattttttgtacataaatctgatcctatcaaaccacccataatttgtataattaattaatcagtcaaattgaaaagctatt 29579922  T
Q  133 tcatttaaagaatcac 148  Q
    ||| | ||||||||||    
T  29579923 tcaatgaaagaatcac 29579938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 16072566 - 16072648
Alignment:
Q  62 acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaa 144  Q
    ||||||||||| | ||||||||||| ||| ||||||||||  || ||||||| |||||||||||| |||||||| | ||||||    
T  16072566 acataaatttgatcctatcaaaccatccctaatttgtataatcatttaatcagtcaatttgaaaaactatttcaatgaaagaa 16072648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 21168970 - 21169068
Alignment:
Q  6 ccttttcttt-tttagtacacgtttgagatttt-tctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    |||||||||| ||| ||||||||||||| |||| |||||||||||||| | |||| || ||||||||  | | |||||||| |||||| ||||||||||    
T  21168970 ccttttctttcttttgtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaatcacccctaatttgtata 21169068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 53011790 - 53011848
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||||||||||||||||   ||||| |||||| || ||||||||||||||||| ||||    
T  53011790 gcataaaccattcattttacccttttccacaacagaggagtgacaaatccaaacgacac 53011848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 11681707 - 11681670
Alignment:
Q  188 ctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  11681707 cttttccacaacagatgagtgacaaatccaaacaacac 11681670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 11689986 - 11689949
Alignment:
Q  188 ctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  11689986 cttttccacaacagatgagtgacaaatccaaacaacac 11689949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26329185 - 26329085
Alignment:
Q  1 tacttccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctgacataaatttggtgctatcaaaccacccccaatttgta 99  Q
    |||||| |||||||| ||| ||||||||||||  |||||||||||| || || | ||||  ||||||||| || ||||| ||||||||| ||||||| ||    
T  26329185 tacttctttttctttctttggtacacgtttgaattttttctagactgtaattctccttt-ggacataaatctgatgctaccaaaccacctccaatttata 26329087  T
Q  100 ta 101  Q
    ||    
T  26329086 ta 26329085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 23426152 - 23426096
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaac 223  Q
    ||||||||||||| ||||   ||||| |||||| || ||||||||||||||||||||    
T  23426152 gcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacaac 23426096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 48512370 - 48512330
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactct 47  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  48512370 ttttctttctttagtacacgtttgagttttttctagactct 48512330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 39081326 - 39081453
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    ||||||||| |||| |||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||  |||||||||||  |||||||||| |||    
T  39081326 agtacacgtatgagttttttctagactctagttttactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtca 39081425  T
Q  118 atttgaaaagctatttcatttaaagaat 145  Q
    |||||||||||||||||||| |||||||    
T  39081426 atttgaaaagctatttcattgaaagaat 39081453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 42411709 - 42411564
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||     
T  42411709 tccttttctttctttagtacacgtttgagttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataa 42411610  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||| | |||||||| |||||||||||||||||||||||||    
T  42411609 tcacttaattagtcaatttggaaagctatttcatttaaagaatcac 42411564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 18916188 - 18916060
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| |||  |||| |||||||| |||| ||||||||||| ||||||||||||||  ||||||||||||||||    
T  18916188 tacacgtttgaggtttttctagactttagttcttcaatctggacataaatctggtactatcaaaccatccccaatttgtataatcacttaatcaatcaat 18916089  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||| | ||||||||||    
T  18916088 ttgaaaagctatttcactgaaagaatcac 18916060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 19367571 - 19367425
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||    
T  19367571 tccttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggattctatcaaaccacccctaatttgtata 19367472  T
Q  102 gccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
      |||||||||| ||||||||||||||||||||||| ||||||||||    
T  19367471 atcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 19367425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 1418827 - 1418967
Alignment:
Q  8 ttttcttttttagtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccac 106  Q
    ||||||| || ||||||||| |||| |||||||||||||||||| | |||| | ||||||| |||| |||||||||||||||  |||||||||||  |||    
T  1418827 ttttcttcttcagtacacgtatgagttttttctagactctagttctactttttagacataa-tttgatgctatcaaaccaccatcaatttgtataatcac 1418925  T
Q  107 ttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| |||||||| |||||||||||||| ||||||||||    
T  1418926 ttaatcagtcaatttgtaaagctatttcattgaaagaatcac 1418967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 13020334 - 13020481
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtat 100  Q
    ||||||||||| ||||||||||||||||| |||||  ||||||||||||| |  ||| || ||||||||  | | ||||||||||||||| |||||||||    
T  13020334 tccttttctttctttagtacacgtttgagttttttttctagactctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtat 13020433  T
Q  101 agccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |  |||||||||| |||||||| |||||||||||||||||||||||||    
T  13020434 aatcacttaatcagtcaatttggaaagctatttcatttaaagaatcac 13020481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 21747364 - 21747236
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctga-cataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| |||| ||||| ||||||| |||| ||||||||||||||||||||||||||  |||||||||| |||||    
T  21747364 tacacgtttgaggtttttctagactttagttcttctatctgaacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaat 21747265  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    || |||  |||| ||||| ||||||||||    
T  21747264 ttaaaatactatgtcattgaaagaatcac 21747236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 38985842 - 38985715
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||| ||| || || | || ||| |||||||||||||| ||||||||||||| ||||||||||||  || |||||||||||||    
T  38985842 tacacgtttgagttttttctaaacttta-ttctcctatctggacataaatttggtactatcaaaccacctccaatttgtataatcatttaatcaatcaat 38985744  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  38985743 ttgaaaagctatttcattgaaagaatcac 38985715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 7993545 - 7993690
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||||| |||||||||| |||||| |||||||||||||||||| | |||| || |||||||   | | ||||||||||||||| ||||||||||     
T  7993545 tccttttctttctttagtacacatttgagttttttctagactctagttctcctttttgtacataaaccggatcctatcaaaccacccctaatttgtataa 7993644  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     ||||||||||  ||||||| |||||||||||||| ||||||||||    
T  7993645 tcacttaatcagccaatttggaaagctatttcattgaaagaatcac 7993690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 15457430 - 15457558
Alignment:
Q  21 tacacgtttgagatttttctagactctagtt-attctttctgacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| | |  | | ||||||||| |||| ||||||||| ||||||||||||||||  |||||||||| |||||    
T  15457430 tacacgtttgagttttttctagactttagttcacttatccggacataaatctggtactatcaaactacccccaatttgtataatcacttaatcagtcaat 15457529  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||| ||| ||||||||||    
T  15457530 ttgaaaagctattttattgaaagaatcac 15457558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 2063738 - 2063863
Alignment:
Q  24 acgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttg 122  Q
    ||||||||| ||||| |||||||||||| | |||| || |||||||| |  | ||||||||||||||| ||||||||||  |||||||||| ||||||||    
T  2063738 acgtttgagttttttttagactctagttttcctttttgtacataaatataatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttg 2063837  T
Q  123 aaaagctatttcatttaaagaatcac 148  Q
     |||||||||||||| ||||||||||    
T  2063838 gaaagctatttcattgaaagaatcac 2063863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 18173073 - 18172946
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| || || | || | || |||||||| |||| ||||||||||||||| ||||||||||  |||||||||| |||||    
T  18173073 tacacgtttgagttttttctagacttta-ttctcctatatggacataaatctggtactatcaaaccacccctaatttgtataatcacttaatcactcaat 18172975  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||  ||||||||||    
T  18172974 ttgaaaagctatttcatcgaaagaatcac 18172946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 18676460 - 18676317
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | ||||||||| ||||| ||||||||||       
T  18676460 ttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaactacccctaatttgtataata 18676361  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  18676360 acttaatcagtcaatttggaaagctatttcattgaaagaatcac 18676317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 26151900 - 26151753
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt-ctagact-ctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtat 100  Q
    ||||||||||| ||||||| ||||||||| ||||| ||||||| |||||| | |||| || ||||||||  | | ||||||||||||||| |||||||||    
T  26151900 tccttttctttctttagtatacgtttgagtttttttctagacttctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtat 26151801  T
Q  101 agccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |  |||||||||| |||||||| |||||||||||||| ||||||||||    
T  26151800 aatcacttaatcagtcaatttggaaagctatttcattgaaagaatcac 26151753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 34061992 - 34061862
Alignment:
Q  19 agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatca 117  Q
    ||||||||| |||| ||||| |||||| ||||| |||||| || |||||||| |||| ||||||||||||||  |||||||||    ||||||||| |||    
T  34061992 agtacacgtatgagttttttttagactatagttcttctttttgtacataaatctggtcctatcaaaccacccataatttgtatgattacttaatcagtca 34061893  T
Q  118 atttgaaaagctatttcatttaaagaatcac 148  Q
    ||||| |||||||||||||| ||||||||||    
T  34061892 atttggaaagctatttcattgaaagaatcac 34061862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 41096690 - 41096544
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| |||||||||| |||||| ||||| ||||||||||||| | |||| || ||||||||  | | |||||||| |||||| ||||||||||    
T  41096690 tccttttctttctttagtacacatttgagtttttttctagactctagttctcctttttgtacataaatcagatcctatcaaatcacccctaatttgtata 41096591  T
Q  102 gccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
      |||||||||| |||||||| ||| |||||||||| ||||||||||    
T  41096590 atcacttaatcagtcaatttggaaaactatttcattgaaagaatcac 41096544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 45618889 - 45619034
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagact-ctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| ||||||| ||||||||| |||||||||||| |||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||    
T  45618889 tccttttctttctttagtatacgtttgagttttttctagacttctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtata 45618988  T
Q  102 gccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
      |||||||||| ||||||||  ||||||||||||| ||||||||||    
T  45618989 atcacttaatcagtcaatttg-gaagctatttcattgaaagaatcac 45619034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 36060060 - 36059915
Alignment:
Q  1 tacttccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgt 98  Q
    |||||| |||||||| ||| |||| ||| | || |||||||||||||||||| | |||| | |||| ||||||| |||||||||||||||  ||||||||    
T  36060060 tacttctttttctttctttggtacgcgtataagttttttctagactctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatttgt 36059961  T
Q  99 atagccacttaatcaatcaatttgaaaagctatttcatttaaagaa 144  Q
    |||  |||||||||| | ||||| ||||||||||||||| ||||||    
T  36059960 ataatcacttaatcagttaatttaaaaagctatttcattgaaagaa 36059915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 6530602 - 6530717
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||||||||||||||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||  |||||||||| ||||||||||||| ||||    
T  6530602 tttttctagactctagttctcatttttgtacataaatcggatactatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaaggtatt 6530701  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  6530702 tcattgaaagaatcac 6530717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 27302661 - 27302534
Alignment:
Q  22 acacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatt 120  Q
    |||| |||||| ||||||||||||||| || |||| |||| ||| ||||| | ||||| |||| ||||| |||||||||||  |||||||||  ||||||    
T  27302661 acacatttgagttttttctagactctaattcttctgtctggacaaaaattcgatgctaccaaatcaccctcaatttgtataatcacttaatcggtcaatt 27302562  T
Q  121 tgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||| ||||| ||||||||||    
T  27302561 tgaaaagctatatcattaaaagaatcac 27302534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 13997244 - 13997372
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    ||||||| |||| |||| |||||||||||||   ||||||| ||||||||||| ||||||  |||||||  ||||||| |||  |||||||| | |||||    
T  13997244 tacacgtatgagtttttcctagactctagtttcactttctggacataaatttgatgctattgaaccaccgtcaatttgaataatcacttaatgagtcaat 13997343  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| |||||||||| ||||||||||    
T  13997344 ttgaaaaactatttcattgaaagaatcac 13997372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 45042332 - 45042450
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatt---tgaaaagct 129  Q
    |||||||||||||||||| ||||||  | ||||||||||| | ||||||||||||||| ||||||||||  |||||||||| ||||||   |||||  ||    
T  45042332 tttttctagactctagttcttcttttcgtacataaatttgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggtgaaagtct 45042431  T
Q  130 atttcatttaaagaatcac 148  Q
    |||||||| ||||||||||    
T  45042432 atttcattgaaagaatcac 45042450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 4855979 - 4856051
Alignment:
Q  76 ctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||| ||||||||||  |||||||||| | |||||| |||||||||||||| ||||||||||    
T  4855979 ctatcaaaccacccctaatttgtataatcacttaatcagtgaatttggaaagctatttcattgaaagaatcac 4856051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 1226400 - 1226286
Alignment:
Q  20 gtacacgtttgagatttttctagactctagttattctttctgacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    ||||||||||||| ||||||||||||||| || | ||||  ||||||||| || ||||| |||||||||| |||||| ||||  |||| |||||  ||||    
T  1226400 gtacacgtttgagttttttctagactctaattctcctttg-gacataaatctgatgctaccaaaccaccctcaatttatataatcactcaatcagacaat 1226302  T
Q  120 ttgaaaagctatttca 135  Q
    |||||||| |||||||    
T  1226301 ttgaaaagttatttca 1226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 17117771 - 17117651
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||  |||||||||| | ||| | | || |||| |||||||| |||| ||||||||||||||||||||||||        |||||| |||||    
T  17117771 tacacgtttgaattttttctagattttagctctcctatctggacataaatctggtactatcaaaccacccccaatttgta--------taatcagtcaat 17117680  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||||||||| ||||||||||    
T  17117679 ttgaaaagctatttcattgaaagaatcac 17117651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 38599376 - 38599459
Alignment:
Q  64 ataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatca 147  Q
    ||||||||| |||||||||| ||    |||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||    
T  38599376 ataaatttgatgctatcaaatcattatcaatttgtataatcacttaatcaatcaatttgaaaaactatttcattgaaagaatca 38599459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 29480730 - 29480643
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||| |||||| ||||||||  ||||||| |||  |||||| ||| ||||||||||||  ||||||||| ||||||||||    
T  29480730 gacataaatttgatgctattaaaccaccatcaatttgaataaacacttattcagtcaatttgaaaaattatttcattgaaagaatcac 29480643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 12269350 - 12269483
Alignment:
Q  16 tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaa 114  Q
    |||||||||| |||||  ||||| |||||||||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||  ||||||||||     
T  12269350 tttagtacacatttgaattttttttagactctagttctcttttttgcacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcag 12269449  T
Q  115 tcaatttgaaaagctatttcatttaaagaatcacc 149  Q
    |  ||||| |||||||||||||| ||| |||||||    
T  12269450 t-gatttggaaagctatttcattaaaaaaatcacc 12269483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 31273313 - 31273173
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| ||||||| || |||||| ||||| || |||| || | | ||||||| || |||||||| || |||||||||||||| ||||||||||  ||    
T  31273313 ttttctttctttagtatacatttgagttttttgtatactccagctctcctttctggacttaaatttgatgttatcaaaccacccc-aatttgtataatca 31273215  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatca 147  Q
     ||||||| |||||||| ||  |||||||||| |||||||||    
T  31273214 tttaatcagtcaatttggaatactatttcattaaaagaatca 31273173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 13001617 - 13001656
Alignment:
Q  62 acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  13001617 acataaatttgatgctatcaaaccacccccaatttgtata 13001656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 25222238 - 25222381
Alignment:
Q  8 ttttcttt-tttagtacacgtttgag-atttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| |||||||||||||||||  |||||||||||| ||||| | |||| || ||||||||  | | |||||||| ||  || ||||||||||  |    
T  25222238 ttttctttctttagtacacgtttgagtttttttctagactttagttctcctttttgtacataaatcggatcctatcaaatcattcctaatttgtataatc 25222337  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| | |||||||  |||| ||||||||| ||||||||||    
T  25222338 acttaattagtcaatttagaaagttatttcattgaaagaatcac 25222381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 18482600 - 18482515
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttga-aaagctatttcatttaaagaat 145  Q
    |||||||||||| ||||| ||||| ||||||||||||||||  | |||||||| ||||||| | | || ||||||||| |||||||    
T  18482600 gacataaatttgatgctaacaaactacccccaatttgtataatcgcttaatcagtcaatttaacacagttatttcattgaaagaat 18482515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 9029547 - 9029623
Alignment:
Q  26 gtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||| ||||| ||||||||| || | |||||| ||||||||| || |||||||||| || ||||||||||||||    
T  9029547 gtttgagttttttttagactctaattctcctttctagacataaatatgttgctatcaaagcagccccaatttgtata 9029623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 32186276 - 32186216
Alignment:
Q  29 tgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacc 88  Q
    |||| |||||||||||||||||| | |||| | |||||||||||| |||||||||||||||    
T  32186276 tgagttttttctagactctagttctactttttagacataaatttgatgctatcaaaccacc 32186216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 36481321 - 36481425
Alignment:
Q  8 ttttcttttttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccac 106  Q
    |||||||| ||||||||| |||||| || || ||||||||| || | |||| || ||||||||| | | || |||||||||||| ||||||||||  |||    
T  36481321 ttttctttcttagtacacatttgagtttcttttagactctaattctcctttttgtacataaattggatcctttcaaaccacccctaatttgtataatcac 36481420  T
Q  107 ttaat 111  Q
    |||||    
T  36481421 ttaat 36481425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 25222401 - 25222459
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||||||||||| ||||   |||||||||||| || ||||||||||| ||||||||||    
T  25222401 gcataaaccattcgttttaccctttttcacaacagaggagtgacaaattcaaacaacac 25222459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 36481472 - 36481530
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||||||||||||||||   ||||| |||||| || ||||||||||||||||| ||||    
T  36481472 gcataaaccattcattttacccttttccacaacagaggagtgacaaatccaaacgacac 36481530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 17117630 - 17117574
Alignment:
Q  169 ataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaacaacac 225  Q
    ||||||||||| |||||  ||||  |||||||||| |||||||||||||||| ||||    
T  17117630 ataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaacgacac 17117574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 18172926 - 18172874
Alignment:
Q  168 cataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaac 220  Q
    |||||||||||| |||||  ||||  |||||||||| ||||||||||||||||    
T  18172926 cataaaccattcgttttcccctttcccacaacggataagtgacaaatccaaac 18172874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 23164723 - 23164578
Alignment:
Q  5 tccttttctttttt-agtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||| | |||| || |||||||| || | ||||||||||||||| ||||||||||     
T  23164723 tccttttcttttttcagtacacgtttgagttttttctagactctagttctcctttttgtacataaatctgatcctatcaaaccacccctaatttgtataa 23164624  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     ||||||||||||||||||| ||  |||||||||| ||||||||||    
T  23164623 tcacttaatcaatcaatttggaagtctatttcattgaaagaatcac 23164578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 51939707 - 51939562
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||     
T  51939707 tccttttctttctttagtccacgtttgagttttttctagactctagttctcttttttgtacataaatcagatcctatcaaaccacccctaatttgtataa 51939608  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||||| ||||||||||||||||||||||| ||||||||||    
T  51939607 tcacttaatcagtcaatttgaaaagctatttcattgaaagaatcac 51939562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 7766978 - 7767121
Alignment:
Q  8 ttttcttttttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    ||||||| |||||||||||| |||| |||||  |||||||| |||| | ||||||| ||||||||||| ||||||||||| |||  |||||||||||  |    
T  7766978 ttttcttctttagtacacgtatgagttttttttctagactccagttctactttctggacataaatttgatgctatcaaacaaccatcaatttgtataatc 7767077  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||    
T  7767078 acttaatcagtcaatttgaaaagctatttcattgaaagaatcac 7767121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 54430465 - 54430607
Alignment:
Q  5 tccttttcttttttag-tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    |||||||||||||| | |||||||||||| ||||||||| |||||||| | |||| || |||||||| || || |||||||||||||| ||||||||||     
T  54430465 tccttttcttttttcggtacacgtttgagttttttctaggctctagttctcctttttgtacataaatctgatgttatcaaaccacccctaatttgtataa 54430564  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaat 145  Q
     |||||||||| ||||||||||||| ||||||||| |||||||    
T  54430565 tcacttaatcagtcaatttgaaaagttatttcattaaaagaat 54430607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 21784923 - 21784790
Alignment:
Q  16 tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaa 114  Q
    ||||||||||||||||| |||||||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||  ||||||||||     
T  21784923 tttagtacacgtttgagttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcag 21784824  T
Q  115 tcaatttgaaaagctatttcatttaaagaatcac 148  Q
    | |||||| |||||||||||||| ||||||||||    
T  21784823 ttaatttggaaagctatttcattgaaagaatcac 21784790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 36538320 - 36538192
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    ||||||| |||| |||||||| ||||||||||| |||| || ||||||| ||| |||||||||||||||  |||||||||||  |||||||||| |||||    
T  36538320 tacacgtatgagttttttctaaactctagttatactttatggacataaacttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaat 36538221  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| |||||||||| ||||||||||    
T  36538220 ttgaaaaactatttcattgaaagaatcac 36538192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 29387903 - 29387760
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttct-agactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| | ||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||  |    
T  29387903 ttttctttctttagtacacgtttgagtttttttttagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatc 29387804  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  29387803 acttaatcaatcaatttgaaaagttatttcattgaaagaatcac 29387760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 41707204 - 41707061
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | ||||||||||||||| |||||| |||  |    
T  41707204 ttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgcataatc 41707105  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||    
T  41707104 acttaatcagtcaatttgaaaagctatttcattgaaagaatcac 41707061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 27303130 - 27303245
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    ||||||||||||||| || | |||| || ||||||||||| ||| || ||||||||  |||||||||||  |||||||||||||||||||||||||||||    
T  27303130 tttttctagactctacttctactttatggacataaatttgatgccatgaaaccaccatcaatttgtataatcacttaatcaatcaatttgaaaagctatt 27303229  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  27303230 tcattgaaagaatcac 27303245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 42009395 - 42009268
Alignment:
Q  22 acacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatt 120  Q
    |||||| |||| ||||| |||||| ||||| | ||||||| ||||||||||| |||||||||||||||  |||||||||||  |||||||||| ||||||    
T  42009395 acacgtatgagttttttttagactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatt 42009296  T
Q  121 tgaaaagctatttcatttaaagaatcac 148  Q
    | ||||| ||||||||| ||||||||||    
T  42009295 taaaaagttatttcattgaaagaatcac 42009268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 8364084 - 8364230
Alignment:
Q  5 tccttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtata 101  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||| ||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||    
T  8364084 tccttttctttctttagtacacgtttgagtttttttctagactcttgttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtata 8364183  T
Q  102 gccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
      |||||||||| |||||||| |||| ||||||||| ||||||||||    
T  8364184 atcacttaatcagtcaatttggaaagttatttcattgaaagaatcac 8364230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 18408107 - 18408249
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcca 105  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||| |  ||| || ||||||||  | | ||||||||||||||| ||||||||||  ||    
T  18408107 ttttctttctttagtacacgtttgagttttttctagactttagttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataatca 18408206  T
Q  106 cttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| |||||||||||||||| | |||| ||||||||||    
T  18408207 cttaatcagtcaatttgaaaagctaatccattgaaagaatcac 18408249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 21596265 - 21596393
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||| | ||||||||||||||| || | ||||||| ||||||||  | |||||||||||||| |||||||||||||  |||||||||| || ||    
T  21596265 tacacgtttgcgttttttctagactctaattctcctttctggacataaatcagatgctatcaaaccactcccaatttgtataatcacttaatcagtcgat 21596364  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||| ||||||||||||||  |||||||||    
T  21596365 ttggaaagctatttcattacaagaatcac 21596393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 28132884 - 28132741
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||| | |||| || ||||||||  | | |||||||| |||||  ||||||||||  |    
T  28132884 ttttctttctttagtacacatttgagattttttctagactctagttctcctttttgtacataaatcagatcctatcaaatcacccttaatttgtataatc 28132785  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  28132784 acttaatcagtcaatttggaaagctatttcattgaaagaatcac 28132741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 23067875 - 23067731
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt--ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagc 103  Q
    |||||||| ||||||||||||||||| |||||  ||||||| ||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||      
T  23067875 ttttctttctttagtacacgtttgagttttttttctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataat 23067776  T
Q  104 cacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||| | || ||||||||||||| ||||||||||||||||||||    
T  23067775 cacttcaccagtcaatttgaaaagttatttcatttaaagaatcac 23067731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 48627163 - 48627035
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| |||||||||||| ||||| |  | |||| |||||||| || | |||||| |||||| ||||||||||||  ||||| |||| |||||    
T  48627163 tacacgtttgagttttttctagactttagttctcatatctggacataaatctgatactatcagaccaccgccaatttgtataatcacttgatcagtcaat 48627064  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||| |||||||||| ||||||||||    
T  48627063 ttgaaaatctatttcattgaaagaatcac 48627035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 46791846 - 46791703
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagcc 104  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | ||||||||||||| | ||||||||||  |    
T  46791846 ttttctttctttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtataatc 46791747  T
Q  105 acttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| |||||||| ||| ||||||||||  |||||||||    
T  46791746 acttaatcagtcaatttggaaaactatttcattgcaagaatcac 46791703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 50677435 - 50677320
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||| ||||||| ||||||| ||||||| ||| ||||||| || ||||||||||||  |||||||||||  |||||||||| |||||||||||| |||||    
T  50677435 ttttcctagactttagttatactttctggacaaaaatttgttgttatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatt 50677336  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||| ||||||    
T  50677335 tcattgaaacaatcac 50677320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 1649924 - 1649850
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttca 135  Q
    ||||||||| ||||||||||||| |||||||||||||||||  |||||||||| |||||||||||| ||||||||    
T  1649924 gacataaatctggtgctatcaaatcacccccaatttgtataatcacttaatcattcaatttgaaaatctatttca 1649850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 52655257 - 52655129
Alignment:
Q  22 acacgtttgagatttt-tctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    ||||||||||| |||| |||||||||||||| | |||| || | ||||||  | | ||||||||||||| | ||||||||||  |||||||||| |||||    
T  52655257 acacgtttgagtttttctctagactctagttctcctttttgtatataaatcggatcctatcaaaccaccactaatttgtataatcacttaatcagtcaat 52655158  T
Q  120 ttgaaaagctatttcatttaaagaatcac 148  Q
    ||| |||||||||||||| ||||||||||    
T  52655157 ttggaaagctatttcattgaaagaatcac 52655129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 25599207 - 25599092
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    ||||| |||||||||||| | |||| || |||||||| || | ||||||||||||| | ||||| ||||  |||||||||| |||||||||||| |||||    
T  25599207 tttttttagactctagttctcctttttgtacataaatctgattctatcaaaccacctctaatttatataatcacttaatcagtcaatttgaaaaactatt 25599108  T
Q  133 tcatttaaagaatcac 148  Q
    ||||| ||||||||||    
T  25599107 tcattgaaagaatcac 25599092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 43905977 - 43905862
Alignment:
Q  21 tacacgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaat 119  Q
    |||||||||||| ||||| |||||| ||||| | || |||| |||||||| |||| ||||||||| |||| |||||||||||  |||| ||||| |||||    
T  43905977 tacacgtttgaggtttttttagactttagttctcctatctggacataaatctggtactatcaaactaccctcaatttgtataatcactcaatcagtcaat 43905878  T
Q  120 ttgaaaagctatttca 135  Q
    |||||||| |||||||    
T  43905877 ttgaaaagttatttca 43905862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 46904713 - 46904800
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||| ||||| |||||||||||||||  |||||||||||  |||||||||| ||||||| |||| |||||||||| ||||||||||    
T  46904713 gacatagatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaaactatttcattgaaagaatcac 46904800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 40152265 - 40152147
Alignment:
Q  20 gtacacgtttgagatttttctagactctagttattctttct-gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaa 118  Q
    ||||||||||||| ||||| ||||||||| || |||||| | |||||| || || ||||| |||| || ||||||||||||||  |||||||||  ||||    
T  40152265 gtacacgtttgagttttttttagactctaattcttctttttagacatagatctgatgctaccaaatcatccccaatttgtataatcacttaatcggtcaa 40152166  T
Q  119 tttgaaaagctatttcatt 137  Q
    |||||||| ||||||||||    
T  40152165 tttgaaaaactatttcatt 40152147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 13401402 - 13401517
Alignment:
Q  34 tttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatt 132  Q
    |||||||| ||||||||| | |||| || ||||| ||| | | |||||||||||| |  ||||||||||  |||||||||| ||||||||||||||||||    
T  13401402 tttttctaaactctagttctcctttttgtacatacattcgatcctatcaaaccactcttaatttgtataatcacttaatcagtcaatttgaaaagctatt 13401501  T
Q  133 tcatttaaagaatcac 148  Q
    |||||  |||||||||    
T  13401502 tcattggaagaatcac 13401517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 19965973 - 19965886
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||| || ||||||||||||||  ||||||||||||  |||||||| | | || |||||||||||||||||| ||||||||||    
T  19965973 gacataaatctgatgctatcaaaccactgccaatttgtataatcacttaattagttaaattgaaaagctatttcattaaaagaatcac 19965886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 27729908 - 27729775
Alignment:
Q  17 ttagtacacgtttgagatttttc-tagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaa 114  Q
    |||||||||||||||| |||||  |||||||||||| | |||| || ||||||||  | |  |||||||||||||| ||||||||||  ||| |||||||    
T  27729908 ttagtacacgtttgagtttttttgtagactctagttctcctttttgtacataaatcggatcttatcaaaccacccctaatttgtataatcacataatcaa 27729809  T
Q  115 tcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||| ||||| |||| ||  ||||||||||    
T  27729808 tcaatttggaaagcaatttgatcgaaagaatcac 27729775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 24252534 - 24252678
Alignment:
Q  8 ttttcttt-tttagtacacgtttgagattttt---ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatag 102  Q
    |||||||| ||||||||||||||||| |||||   ||||||||||||| |||||| || |||||| |  | | ||||||||||||||  ||||||||||     
T  24252534 ttttctttctttagtacacgtttgagtttttttttctagactctagttcttctttttgtacataa-tcagatcctatcaaaccacccttaatttgtataa 24252632  T
Q  103 ccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
     |||||||||| |||||||| |||| ||||||| |  |||||||||    
T  24252633 tcacttaatcagtcaatttggaaagttatttcagtgcaagaatcac 24252678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 51146909 - 51146995
Alignment:
Q  61 gacataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    |||||||||||| |||||| ||||||||  ||||||| |||  |||||||||| ||||||| |||| |||||| ||| ||||||||||    
T  51146909 gacataaatttgatgctattaaaccaccatcaatttgaata-tcacttaatcagtcaatttaaaaaactattttattgaaagaatcac 51146995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 24252698 - 24252751
Alignment:
Q  167 gcataaaccattcattttcttctttttcacaacggatgagtgacaaatccaaac 220  Q
    ||||||||||||| ||||   ||||| |||||| ||||||||||||||||||||    
T  24252698 gcataaaccattcgttttacccttttccacaacagatgagtgacaaatccaaac 24252751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 16634 - 16768
Alignment:
Q  16 tttagtacacgtttgagattttt-ctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatca 113  Q
    ||||||||||||||||| ||||| ||||||||||||| | |||| || ||||||||  | | ||||||||||||||| ||||||||||  ||||||||||    
T  16634 tttagtacacgtttgagtttttttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatca 16733  T
Q  114 atcaatttgaaaagctatttcatttaaagaatcac 148  Q
     ||||||||||||||||||||||| ||||||||||    
T  16734 gtcaatttgaaaagctatttcattgaaagaatcac 16768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 17273 - 17138
Alignment:
Q  16 tttagtacacgtttga--gatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatc 112  Q
    ||||||||||||||||  | |||||||||||||||||| |  ||| || | ||||||  | | |||||||| |||||| ||||||||||  |||||||||    
T  17273 tttagtacacgtttgaatgttttttctagactctagttctcatttttgtatataaatcggatcctatcaaatcacccctaatttgtataatcacttaatc 17174  T
Q  113 aatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    | |||||||| ||||||||||| || ||||||||||    
T  17173 agtcaatttggaaagctatttcgttgaaagaatcac 17138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 8525 - 8401
Alignment:
Q  25 cgtttgagatttttctagactctagttattctttctg-acataaatttggtgctatcaaaccacccccaatttgtatagccacttaatcaatcaatttga 123  Q
    |||||||| || | ||||||||||| | | ||||||| |||||||  |  ||||||||||||||||  ||||||||||  || ||||||| |||||||      
T  8525 cgtttgagtttctactagactctagatttcctttctggacataaaccttatgctatcaaaccacccataatttgtataatcaattaatcagtcaatttcg 8426  T
Q  124 aaagctatttcatttaaagaatcac 148  Q
    ||| |||||||||| ||||||||||    
T  8425 aaaactatttcattgaaagaatcac 8401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 46251 - 46179
Alignment:
Q  76 ctatcaaaccacccccaatttgtatagccacttaatcaatcaatttgaaaagctatttcatttaaagaatcac 148  Q
    ||||||||||||||  |||||| |||  |||||||||| |||||||| ||  |||||||||| ||| ||||||    
T  46251 ctatcaaaccacccataatttggataatcacttaatcagtcaatttggaagtctatttcattgaaataatcac 46179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 224 times since January 2019
Visitors: 3675