View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_high_5 (Length: 682)
Name: NF0549_high_5
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 31996536 - 31996835
Alignment:
| Q |
11 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagactcgagttccaagaaattgcctcgtggatgt |
110 |
Q |
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| T |
31996536 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagactcgagttccaagaaaatgcctcgtggatgt |
31996635 |
T |
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| Q |
111 |
ggacttgcactgtaggacatgtagctggcacattatttgagaaatattggttgttctttctggttctgtaaaagacttgaattttaaatttgtttataaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31996636 |
ggacttgcactgtaggacatgtagctggcacattatttgagaaatattggttgttctttctggttctgtaaaagacttgaattttaaatttgtttataaa |
31996735 |
T |
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| Q |
211 |
attccttttttacctttgttatttgtgattaatttcatacctattaaacaattgagaaatatattggaggatctattataatttggagtctgtttcatga |
310 |
Q |
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| T |
31996736 |
attccttttttacctttgttatttgtgattaatttcatacctattggacaattgagaaatatattggaggctctattataatttggagtctgtttcatga |
31996835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 345 - 581
Target Start/End: Original strand, 31996871 - 31997106
Alignment:
| Q |
345 |
gcttgctacttgcaggtttgaaggaggacgtgatacttttaactgttttgtttgatcaaagggtgaagctatattgttttacaatgactattttttgcaa |
444 |
Q |
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| T |
31996871 |
gcttgctacttgcaggtttgaaggaggacgtgatacttttaactgttttgtttgatcaaagggtgaagctatattgttttacaatgactattttttgcaa |
31996970 |
T |
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| Q |
445 |
actattttctgtatattatttcttacttactcaaatctctctgatattgatatgttgttatttcttgtgctagagttattttctgattaaggcaagttta |
544 |
Q |
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| T |
31996971 |
actattttctgtatattatttcttacatactcaaatctctctgatattgatatgttgttatttcttttgctaga-ttactttctgattaaggcaagttta |
31997069 |
T |
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| Q |
545 |
gaccttacagtatgcacaacaattattcggtatacaa |
581 |
Q |
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| T |
31997070 |
gaccttacagtatgcacagcaattattcggtatacaa |
31997106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 31997874 - 31997934
Alignment:
| Q |
59 |
cgatcccaaggatgttggagactcgagttccaagaaattgcctcgtggatgtggacttgca |
119 |
Q |
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| T |
31997874 |
cgatcccaaggacgtcgaatactcgagttccaagaaaatgcctcgtggacgtggacttgca |
31997934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 24010989 - 24011097
Alignment:
| Q |
11 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagactcgagttccaagaaattgcctcgtggatgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | |||| |||| |||||||||| ||||| ||||||||||||| |||| |||||| || |
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| T |
24010989 |
cacagagataaagccagagtggttgctggagatagcccccaatttttacaatcctaaggatgttgaagacttgagttccaagaaaatgccccgtggaagt |
24011088 |
T |
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| Q |
111 |
ggacttgca |
119 |
Q |
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| T |
24011089 |
ggacttgca |
24011097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 438
Target Start/End: Original strand, 24011429 - 24011521
Alignment:
| Q |
345 |
gcttgctacttgcaggtttgaaggaggacgtgatacttttaactgttttgtttgatcaaagggtgaagctatattgttttacaatgactatttt |
438 |
Q |
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||||||| |||||| || |||||||||| |||||||| || | |||||||| ||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
24011429 |
gcttgctgtttgcagattggaaggaggacatgatacttc-aattcttttgtttaatcaaagggtgaagctatactgtttgacaatgattatttt |
24011521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 24011332 - 24011386
Alignment:
| Q |
258 |
acaattgagaaatatattggaggatctattataatttggagtc--tgtttcatga |
310 |
Q |
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| T |
24011332 |
acaattgagaaatatattggaagctctgttataatttggagtccatgtttcatga |
24011386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 24011575 - 24011622
Alignment:
| Q |
512 |
tgctagagttattttctgattaaggcaagtttagaccttacagtatgca |
560 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||| || ||||| |
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| T |
24011575 |
tgctagagttattt-ctgattaaggcaagtttagactttagagaatgca |
24011622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 7290693 - 7290762
Alignment:
| Q |
11 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagac |
80 |
Q |
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||||||| ||||| ||||||||||| ||||||||||||| |||| |||| | | ||||||||||| |||| |
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| T |
7290693 |
cacagagttaaaggcagagtggttgttggagatagcccctcactattaccagctcaaggatgttgaagac |
7290762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 15843016 - 15843058
Alignment:
| Q |
77 |
agactcgagttccaagaaattgcctcgtggatgtggacttgca |
119 |
Q |
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| T |
15843016 |
agactcgagttcgaagaaaatacctcgtggatgtggacttgca |
15843058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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