View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_high_8 (Length: 591)

Name: NF0549_high_8
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_high_8
NF0549_high_8
[»] chr7 (17 HSPs)
chr7 (377-517)||(35109691-35109831)
chr7 (377-517)||(38265229-38265369)
chr7 (377-517)||(41151172-41151313)
chr7 (378-517)||(21577091-21577230)
chr7 (388-517)||(16059356-16059485)
chr7 (384-517)||(34721834-34721967)
chr7 (377-517)||(12472121-12472261)
chr7 (384-499)||(37095209-37095324)
chr7 (378-517)||(38405147-38405286)
chr7 (378-504)||(245257-245383)
chr7 (377-517)||(45278452-45278592)
chr7 (388-517)||(18116947-18117076)
chr7 (390-515)||(11216771-11216896)
chr7 (388-517)||(48176399-48176529)
chr7 (384-516)||(23028684-23028816)
chr7 (384-485)||(28407540-28407637)
chr7 (384-427)||(39234853-39234896)
[»] chr2 (25 HSPs)
chr2 (378-517)||(45136963-45137102)
chr2 (378-515)||(17136389-17136526)
chr2 (378-517)||(40156040-40156179)
chr2 (378-517)||(25987654-25987794)
chr2 (377-516)||(21637898-21638037)
chr2 (378-516)||(10745225-10745363)
chr2 (378-517)||(2754044-2754183)
chr2 (395-517)||(6672803-6672925)
chr2 (384-517)||(36836328-36836461)
chr2 (377-517)||(5039420-5039560)
chr2 (378-516)||(36380125-36380263)
chr2 (384-517)||(44650393-44650526)
chr2 (378-516)||(26690155-26690293)
chr2 (378-495)||(558432-558549)
chr2 (379-514)||(3200884-3201019)
chr2 (378-517)||(2357069-2357207)
chr2 (378-517)||(7860139-7860278)
chr2 (387-516)||(30372682-30372811)
chr2 (384-515)||(33066592-33066723)
chr2 (385-516)||(13047156-13047282)
chr2 (399-484)||(21487181-21487266)
chr2 (388-492)||(4553561-4553666)
chr2 (384-434)||(2098825-2098875)
chr2 (447-502)||(20961496-20961551)
chr2 (439-479)||(30477240-30477280)
[»] chr3 (26 HSPs)
chr3 (384-517)||(8400855-8400988)
chr3 (384-517)||(7417798-7417931)
chr3 (378-517)||(50823698-50823837)
chr3 (378-517)||(50852023-50852162)
chr3 (384-517)||(35198765-35198898)
chr3 (384-516)||(22855888-22856020)
chr3 (377-517)||(43334046-43334186)
chr3 (384-506)||(52545332-52545454)
chr3 (388-517)||(34824556-34824685)
chr3 (388-516)||(55468000-55468129)
chr3 (377-502)||(29635883-29636009)
chr3 (385-488)||(22371729-22371832)
chr3 (384-470)||(37330606-37330692)
chr3 (378-495)||(19872476-19872593)
chr3 (385-470)||(30534902-30534987)
chr3 (421-516)||(48077977-48078072)
chr3 (384-470)||(37454743-37454829)
chr3 (377-457)||(25910658-25910738)
chr3 (377-517)||(50725989-50726129)
chr3 (377-517)||(50786719-50786859)
chr3 (377-503)||(42876229-42876355)
chr3 (383-478)||(30203652-30203744)
chr3 (384-485)||(25589253-25589347)
chr3 (377-428)||(773666-773717)
chr3 (377-460)||(39438821-39438903)
chr3 (390-435)||(31297529-31297574)
[»] chr8 (21 HSPs)
chr8 (377-517)||(19723311-19723451)
chr8 (377-516)||(11404002-11404141)
chr8 (378-517)||(4840140-4840279)
chr8 (377-515)||(29767190-29767326)
chr8 (384-515)||(32296638-32296769)
chr8 (388-499)||(17095568-17095679)
chr8 (378-517)||(22711509-22711648)
chr8 (378-514)||(28739554-28739690)
chr8 (378-484)||(36261679-36261785)
chr8 (377-516)||(41553286-41553425)
chr8 (405-488)||(21355004-21355087)
chr8 (379-517)||(11610280-11610418)
chr8 (377-471)||(11909415-11909509)
chr8 (384-514)||(30682842-30682971)
chr8 (383-484)||(43288105-43288206)
chr8 (418-502)||(24475029-24475113)
chr8 (441-515)||(27881044-27881118)
chr8 (441-515)||(28021225-28021299)
chr8 (378-445)||(27879553-27879620)
chr8 (378-445)||(28019734-28019801)
chr8 (378-505)||(44741914-44742038)
[»] chr5 (10 HSPs)
chr5 (377-517)||(17064323-17064463)
chr5 (383-514)||(20983001-20983132)
chr5 (384-517)||(37976546-37976683)
chr5 (384-476)||(41910865-41910957)
chr5 (390-484)||(31673863-31673956)
chr5 (384-500)||(5009416-5009531)
chr5 (378-428)||(35237052-35237102)
chr5 (389-507)||(39162859-39162977)
chr5 (465-516)||(35237103-35237154)
chr5 (427-484)||(18303352-18303409)
[»] chr1 (17 HSPs)
chr1 (388-517)||(30054445-30054574)
chr1 (378-517)||(20014458-20014597)
chr1 (377-516)||(30370052-30370191)
chr1 (377-517)||(45324006-45324146)
chr1 (377-516)||(12025182-12025321)
chr1 (388-516)||(21090116-21090244)
chr1 (378-499)||(22024121-22024242)
chr1 (379-517)||(4573379-4573517)
chr1 (386-517)||(30850841-30850972)
chr1 (378-488)||(14498072-14498182)
chr1 (377-504)||(33763246-33763373)
chr1 (377-491)||(33762532-33762646)
chr1 (395-473)||(35371755-35371833)
chr1 (397-505)||(44438562-44438670)
chr1 (377-458)||(35618034-35618115)
chr1 (377-445)||(17015192-17015260)
chr1 (471-517)||(15034455-15034501)
[»] chr4 (26 HSPs)
chr4 (377-517)||(46494390-46494530)
chr4 (378-517)||(51066493-51066632)
chr4 (385-516)||(36192542-36192673)
chr4 (378-517)||(51713958-51714097)
chr4 (378-517)||(32139164-32139303)
chr4 (384-517)||(7173584-7173717)
chr4 (384-517)||(30970383-30970516)
chr4 (378-517)||(50905748-50905887)
chr4 (384-517)||(39863777-39863910)
chr4 (415-517)||(8740448-8740550)
chr4 (378-488)||(29576444-29576554)
chr4 (377-489)||(55231715-55231827)
chr4 (377-502)||(2570216-2570341)
chr4 (378-517)||(47626986-47627127)
chr4 (378-479)||(676766-676867)
chr4 (384-461)||(22304090-22304167)
chr4 (378-491)||(41523423-41523536)
chr4 (388-516)||(2294719-2294841)
chr4 (377-484)||(4080544-4080651)
chr4 (377-506)||(50399634-50399763)
chr4 (387-506)||(51279035-51279154)
chr4 (414-515)||(22423378-22423479)
chr4 (379-450)||(23084459-23084530)
chr4 (396-453)||(37990606-37990663)
chr4 (383-482)||(40012548-40012646)
chr4 (388-431)||(51066240-51066283)
[»] chr6 (9 HSPs)
chr6 (378-517)||(35163743-35163882)
chr6 (377-496)||(20685346-20685465)
chr6 (378-515)||(19686820-19686957)
chr6 (378-517)||(2711733-2711866)
chr6 (383-495)||(17948702-17948814)
chr6 (379-517)||(14505519-14505655)
chr6 (395-490)||(15070152-15070247)
chr6 (463-517)||(14496352-14496406)
chr6 (414-492)||(24336640-24336718)
[»] scaffold0021 (1 HSPs)
scaffold0021 (384-516)||(107691-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (410-515)||(6994-7099)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 35109831 - 35109691
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109831 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 35109732  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  35109731 ctccaaaggcactagtggggctcgaacccgggttctctcgg 35109691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 377 - 517
Target Start/End: Original strand, 38265229 - 38265369
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265229 ggttacataaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 38265328  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  38265329 ctccaaaggcactagcggggctcgaacccaggttctctcgg 38265369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 41151313 - 41151172
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttac-aaaggtaattacatttacctc 475  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41151313 ggttacaaaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctc 41151214  T
Q  476 cctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  41151213 cctccaaagacactagcggggctcgaacccgggttctctcgg 41151172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 21577091 - 21577230
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  21577091 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccc 21577190  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  21577191 tccaaaggcattagtggggctcgaacccgggttctctcgg 21577230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 388 - 517
Target Start/End: Original strand, 16059356 - 16059485
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 487  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  488 ctagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcgg 16059485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 34721967 - 34721834
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||| ||| ||||||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcgg 34721834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 12472261 - 12472121
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||| ||| ||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  12472261 ggttacacaaagtttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctcc 12472162  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  12472161 ctccaaaggcactagtggggctcgaacccgggttctctcgg 12472121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 384 - 499
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  484 ggcactagcggggctc 499  Q
    | ||||||||||||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 38405147 - 38405286
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  38405147 gttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccc 38405246  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||||| ||||||||| ||  |||||||||    
T  38405247 tccaaaggcactagcgaggctcgaactcgaattctctcgg 38405286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 378 - 504
Target Start/End: Original strand, 245257 - 245383
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  245257 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccc 245356  T
Q  478 tccaaaggcactagcggggctcgaacc 504  Q
    ||||| |||||||||||||||||||||    
T  245357 tccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 45278592 - 45278452
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||| |||    
T  45278592 ggttacaaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcc 45278493  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    || ||||||||||||||||||||||||||||||| ||||||    
T  45278492 cttcaaaggcactagcggggctcgaacccgggttatctcgg 45278452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 388 - 517
Target Start/End: Original strand, 18116947 - 18117076
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 487  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  488 ctagcggggctcgaacccgggttctctcgg 517  Q
    |||||| |||||||||||||||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcgg 18117076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 390 - 515
Target Start/End: Complemental strand, 11216896 - 11216771
Alignment:
Q  390 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcact 489  Q
    |||| ||||||| ||| ||||| ||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  490 agcggggctcgaacccgggttctctc 515  Q
    |  |||||||||||||||||||||||    
T  11216796 aatggggctcgaacccgggttctctc 11216771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 388 - 517
Target Start/End: Complemental strand, 48176529 - 48176399
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggc-agggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 486  Q
    |||||| |||||||||||||||||||||||||||  |||||| |||||| |||||||| | |||||||||| ||| |||||||||||||| |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  487 actagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||| |||||||||    
T  48176429 actagcggggctcgaacccggattctctcgg 48176399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 516
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    ||||||||||  |||| |||||||| | ||||| |||| ||||||| |||||||| ||||| | |||||| |||||||||||||||||| |||||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  484 ggcactagcggggctcgaacccgggttctctcg 516  Q
    |||| ||| || | |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 384 - 485
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||||||||||||| ||||||||  |    |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 39234896 - 39234853
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcaggga 427  Q
    |||||||| | |||||||||||||||||||||||| ||||||||    
T  39234896 aaaatttttgggtgaggggatggtgccccagtccatggcaggga 39234853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 45136963 - 45137102
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45136963 gttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 45137062  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45137063 tccaaaggcactagcggggctcgaacccgggttctctcgg 45137102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 378 - 515
Target Start/End: Complemental strand, 17136526 - 17136389
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17136526 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 17136427  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctc 515  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17136426 tccaaaggcactaacggggctcgaacccgggttctctc 17136389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 40156179 - 40156040
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40156179 gttacaaaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 40156080  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  40156079 tccaaaggcactagcggggctcgaacccggattctctcgg 40156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 25987654 - 25987794
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa-gaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25987654 gttacaaaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctcc 25987753  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  25987754 ctccaaaggcactagcggggctcgaacccgagttctctcgg 25987794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 21638037 - 21637898
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  21638037 ggttacaaaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctcc 21637938  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21637937 ctccaaaggcactagcggggctcaaacccgggttctctcg 21637898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 378 - 516
Target Start/End: Original strand, 10745225 - 10745363
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  10745225 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccc 10745324  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    || |||||||||||||||||||| |||||||||||||||    
T  10745325 tctaaaggcactagcggggctcggacccgggttctctcg 10745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 2754044 - 2754183
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2754044 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2754143  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||| ||| ||| |||||| ||||||||||||||    
T  2754144 tccaaaggcattagtgggactcgaatccgggttctctcgg 2754183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 395 - 517
Target Start/End: Original strand, 6672803 - 6672925
Alignment:
Q  395 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgg 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  6672803 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcgg 6672902  T
Q  495 ggctcgaacccgggttctctcgg 517  Q
    |||| ||||||||||||||||||    
T  6672903 ggcttgaacccgggttctctcgg 6672925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 36836328 - 36836461
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||| |||||| ||||||| |||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcgg 36836461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 5039560 - 5039420
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5039560 ggttacaaaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctcc 5039461  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||| ||| |||||||||| ||||||||||| ||||||||||    
T  5039460 ctctaaaagcactagcggagctcgaacccgagttctctcgg 5039420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 378 - 516
Target Start/End: Original strand, 36380125 - 36380263
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36380125 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccc 36380224  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    ||||||||||||||||||| || |||||| ||| |||||    
T  36380225 tccaaaggcactagcggggttcaaacccgagttttctcg 36380263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 44650526 - 44650393
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||| ||| |||||||  |||||||||||||    
T  44650426 ggcactaacggagctcgaaatcgggttctctcgg 44650393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 378 - 516
Target Start/End: Complemental strand, 26690293 - 26690155
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||||||    
T  26690293 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccc 26690194  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    |||||| ||||||||||| ||||||||| | ||||||||    
T  26690193 tccaaaagcactagcgggactcgaacccagattctctcg 26690155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 378 - 495
Target Start/End: Original strand, 558432 - 558549
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  558432 gttacaaaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccc 558531  T
Q  478 tccaaaggcactagcggg 495  Q
    ||||||||||||||||||    
T  558532 tccaaaggcactagcggg 558549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 379 - 514
Target Start/End: Complemental strand, 3201019 - 3200884
Alignment:
Q  379 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 478  Q
    ||||||||||||||| | |||| ||||||||||||||| ||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  3201019 ttacaaaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccct 3200920  T
Q  479 ccaaaggcactagcggggctcgaacccgggttctct 514  Q
    ||||||||||||||| |||||||| || ||||||||    
T  3200919 ccaaaggcactagcgaggctcgaatccaggttctct 3200884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 2357069 - 2357207
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||| |||| |||||| |||| |||||||||||||||    
T  2357069 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccc 2357167  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||| ||||| ||  |||||||||||||||||||||    
T  2357168 tccaaaggtactagtggaactcgaacccgggttctctcgg 2357207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 7860139 - 7860278
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |||  ||||||||||||||    
T  7860139 gttacaaaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccc 7860238  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  7860239 tccaaaggcactagcggggctcaaacccaggttctctcgg 7860278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 387 - 516
Target Start/End: Original strand, 30372682 - 30372811
Alignment:
Q  387 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 486  Q
    ||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  487 actagcggggctcgaacccgggttctctcg 516  Q
    |||||||| |||||||||| || |||||||    
T  30372782 actagcggagctcgaacccaggatctctcg 30372811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 384 - 515
Target Start/End: Complemental strand, 33066723 - 33066592
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    ||||||||||  |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  484 ggcactagcggggctcgaacccgggttctctc 515  Q
    | |||||| |  |||||||||||| |||||||    
T  33066623 gacactagtgaagctcgaacccggattctctc 33066592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 385 - 516
Target Start/End: Original strand, 13047156 - 13047282
Alignment:
Q  385 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 484  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||   |||||||||| ||||||||||||||||||    
T  13047156 aaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactt---aaggtaattatatttacctccctccaaag 13047252  T
Q  485 gcactagcggggctcgaacccgggttctctcg 516  Q
      ||  ||||||||||||||||| ||||||||    
T  13047253 --acatgcggggctcgaacccggattctctcg 13047282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 399 - 484
Target Start/End: Complemental strand, 21487266 - 21487181
Alignment:
Q  399 ggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 484  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  21487266 ggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaag 21487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 388 - 492
Target Start/End: Original strand, 4553561 - 4553666
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc-cctccaaaggc 486  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||||||||| ||||||||| ||| ||| ||||||||| ||||||||  |    
T  4553561 ttttagagtgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaac 4553660  T
Q  487 actagc 492  Q
    ||||||    
T  4553661 actagc 4553666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagacctt 434  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  447 gcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaa 502  Q
    ||||||||||| | | |||||||||||||||||||| ||||||||||| |||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 30477240 - 30477280
Alignment:
Q  439 ctcaaagagcacttacaaaggtaattacatttacctccctc 479  Q
    ||||||||| ||||||||||||| ||| |||||||||||||    
T  30477240 ctcaaagagaacttacaaaggtatttagatttacctccctc 30477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 8400988 - 8400855
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||||||||    
T  8400888 ggcactagcggggctcgaacccgggttctctcgg 8400855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 7417931 - 7417798
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417931 aaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 7417832  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||||||||    
T  7417831 ggcactagcggggctcgaacccgggttctctcgg 7417798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 50823837 - 50823698
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823837 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50823738  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||| |||| ||||||||||| |||||||||    
T  50823737 tccaaaggcactaacgggactcgaacccggattctctcgg 50823698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 50852023 - 50852162
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852023 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50852122  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||| |||| ||||||||||| |||||||||    
T  50852123 tccaaaggcactaacgggactcgaacccggattctctcgg 50852162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 35198898 - 35198765
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||| ||| |||||||||||||||||||||||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcgg 35198765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 384 - 516
Target Start/End: Complemental strand, 22856020 - 22855888
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22856020 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaa 22855921  T
Q  484 ggcactagcggggctcgaacccgggttctctcg 516  Q
    | ||||||||||||||||||| |||||||||||    
T  22855920 gacactagcggggctcgaacctgggttctctcg 22855888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 377 - 517
Target Start/End: Original strand, 43334046 - 43334186
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  43334046 ggttacaaaatttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctcc 43334145  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  43334146 ctcccaagacactagcggggctcgaactcgggttctctcgg 43334186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 384 - 506
Target Start/End: Complemental strand, 52545454 - 52545332
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  484 ggcactagcggggctcgaacccg 506  Q
    |||||||||||||||||||||||    
T  52545354 ggcactagcggggctcgaacccg 52545332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 388 - 517
Target Start/End: Complemental strand, 34824685 - 34824556
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 487  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  488 ctagcggggctcgaacccgggttctctcgg 517  Q
    ||| |||| ||||||| | |||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcgg 34824556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 388 - 516
Target Start/End: Complemental strand, 55468129 - 55468000
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcggg-ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 486  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  487 actagcggggctcgaacccgggttctctcg 516  Q
    | ||| ||||||||||||||| ||||||||    
T  55468029 attagtggggctcgaacccggattctctcg 55468000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 377 - 502
Target Start/End: Complemental strand, 29636009 - 29635883
Alignment:
Q  377 ggttacaaaaattttagagtgaggggat-ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc 475  Q
    ||||||| ||||||||| ||||||| || ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29636009 ggttacagaaattttagcgtgagggaattggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctc 29635910  T
Q  476 cctccaaaggcactagcggggctcgaa 502  Q
    ||| |||||||||||||| ||||||||    
T  29635909 ccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 385 - 488
Target Start/End: Original strand, 22371729 - 22371832
Alignment:
Q  385 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 484  Q
    ||||||||| |||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22371729 aaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaag 22371828  T
Q  485 gcac 488  Q
    ||||    
T  22371829 gcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 470  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 378 - 495
Target Start/End: Original strand, 19872476 - 19872593
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||  ||||||| ||    
T  19872476 gttataaaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcc 19872575  T
Q  478 tccaaaggcactagcggg 495  Q
    ||||||||||| ||||||    
T  19872576 tccaaaggcacaagcggg 19872593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  385 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 470  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 421 - 516
Target Start/End: Original strand, 48077977 - 48078072
Alignment:
Q  421 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||| | |||||||||||| |||||||||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcg 48078072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 384 - 470
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 470  Q
    |||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 25910658 - 25910738
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa 457  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  25910658 ggttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaa 25910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 377 - 517
Target Start/End: Original strand, 50725989 - 50726129
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50725989 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50726088  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||| ||||| |||||||||||||||  |||||||||    
T  50726089 ctccaaagacactaacggggctcgaacccgaattctctcgg 50726129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 50786859 - 50786719
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50786859 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50786760  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||| ||||| |||||||||||||||  |||||||||    
T  50786759 ctccaaagacactaacggggctcgaacccgaattctctcgg 50786719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 377 - 503
Target Start/End: Complemental strand, 42876355 - 42876229
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||| ||| ||||| ||||| ||||||||||| ||||||||  ||||||||| |||  | |||||||||||||||||||||||||||||||||||||    
T  42876355 ggttacagaaaatttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctcc 42876256  T
Q  477 ctccaaaggcactagcggggctcgaac 503  Q
     || |||| ||||||  ||||||||||    
T  42876255 atctaaagacactagtcgggctcgaac 42876229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 383 - 478
Target Start/End: Original strand, 30203652 - 30203744
Alignment:
Q  383 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 478  Q
    |||| |||||||||||||||||||||||||||| |||| || |||| ||||||| ||||||||| || ||||||||||  ||||||||||||||||    
T  30203652 aaaatttttagagtgaggggatggtgccccagttcaagaca-ggaaaaccttcgagctcaaagaacatttacaaaggt--ttacatttacctccct 30203744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 485
Target Start/End: Complemental strand, 25589347 - 25589253
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||| |||||||| |||||||||||||       |||| |||||||||||||||| |||||| |||||||||||||| ||||||    
T  25589347 aaaattttagggtgaggggagggtgcccccgtccaaggcaggg-------tcggactcaaagagcacttactaaggtatttacatttacctccttccaaa 25589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 773717 - 773666
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 428  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  773717 ggttacaaaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 39438821 - 39438903
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggt 460  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||| ||| ||||| || ||  | ||||| |||||||||||||    
T  39438821 ggttacaaaaattttagggtgaggg-atggtgccccagttcaaggtaggaaagacttttggatttaaagaacacttacaaaggt 39438903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 31297529 - 31297574
Alignment:
Q  390 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttc 435  Q
    |||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  31297529 ttagggtgagggcatggttccccagtccaaggcaaggaagaccttc 31297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 19723451 - 19723311
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  19723451 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctcc 19723352  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19723351 ctccaaaggcactagcggggctcgaacccgggttctctcgg 19723311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 11404141 - 11404002
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11404141 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 11404042  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    |||||||| |||||||| ||||||||||| ||||||||||    
T  11404041 ctccaaagacactagcgaggctcgaacccaggttctctcg 11404002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 4840279 - 4840140
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| |||||||||||||    
T  4840279 gttacagaaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccc 4840180  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4840179 tccaaaggcactagcggggctcgaacccgggttctctcgg 4840140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 515
Target Start/End: Complemental strand, 29767326 - 29767190
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  29767326 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcc 29767229  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctc 515  Q
    || |||||||||||||||||||||| |||||||||||||    
T  29767228 cttcaaaggcactagcggggctcgaccccgggttctctc 29767190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 384 - 515
Target Start/End: Original strand, 32296638 - 32296769
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  484 ggcactagcggggctcgaacccgggttctctc 515  Q
    ||||||||| ||||| ||||||||||||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctc 32296769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 388 - 499
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 487  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  488 ctagcggggctc 499  Q
    ||||||||||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 22711648 - 22711509
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22711648 gttacaaaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 22711549  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||| |||  || ||| |||||| ||||||||||    
T  22711548 tccaaaggcattagttggactcaaacccgagttctctcgg 22711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 378 - 514
Target Start/End: Original strand, 28739554 - 28739690
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    ||||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||    
T  28739554 gttacaaaatttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcc 28739653  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctct 514  Q
    |||||||||||||| |||||| |||||| ||||||||    
T  28739654 tccaaaggcactagtggggcttgaacccaggttctct 28739690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 378 - 484
Target Start/End: Complemental strand, 36261785 - 36261679
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36261785 gttacaaaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 36261686  T
Q  478 tccaaag 484  Q
    |||||||    
T  36261685 tccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 41553425 - 41553286
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | |    
T  41553425 ggttacaaaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttc 41553326  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    |||||||| || ||| ||| ||||||| ||||||||||||    
T  41553325 ctccaaagacattagtgggactcgaactcgggttctctcg 41553286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 405 - 488
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  405 ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 488  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 379 - 517
Target Start/End: Complemental strand, 11610418 - 11610280
Alignment:
Q  379 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 478  Q
    ||||||||||||||| ||||||||||||||||||||||||||  | | |||||||||||||| ||| ||||||||||||| || ||| ||||||||  ||    
T  11610418 ttacaaaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttct 11610319  T
Q  479 ccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||| |||||||| ||| | ||||||||    
T  11610318 ccaaaggcactagcgaggctcgaatccgagatctctcgg 11610280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 11909415 - 11909509
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattta 471  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  11909415 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 384 - 514
Target Start/End: Complemental strand, 30682971 - 30682842
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtgccc-agtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  484 ggcactagcggggctcgaacccgggttctct 514  Q
    ||||| || ||||||||||| |||| |||||    
T  30682872 ggcaccagtggggctcgaacacgggctctct 30682842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 383 - 484
Target Start/End: Complemental strand, 43288206 - 43288105
Alignment:
Q  383 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 482  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||    
T  43288206 aaaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaa 43288107  T
Q  483 ag 484  Q
    ||    
T  43288106 ag 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 502
Target Start/End: Original strand, 24475029 - 24475113
Alignment:
Q  418 aaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaa 502  Q
    |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaa 24475113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 441 - 515
Target Start/End: Original strand, 27881044 - 27881118
Alignment:
Q  441 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctc 515  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 27881118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 441 - 515
Target Start/End: Original strand, 28021225 - 28021299
Alignment:
Q  441 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctc 515  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 28021299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 445
Target Start/End: Original strand, 27879553 - 27879620
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 445  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  27879553 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 445
Target Start/End: Original strand, 28019734 - 28019801
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 445  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  28019734 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 378 - 505
Target Start/End: Original strand, 44741914 - 44742038
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    ||||||||||||| || ||||||||||||  ||||||||||||||||| |||||| | || ||    ||||||||||||||| | | | ||| || || |    
T  44741914 gttacaaaaattt-agggtgaggggatggcaccccagtccaaggcaggtaagaccataggact--tggagcacttacaaagggattaatattaacttctc 44742010  T
Q  478 tccaaaggcactagcggggctcgaaccc 505  Q
    |||||||||||||||| |||||||||||    
T  44742011 tccaaaggcactagcgaggctcgaaccc 44742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 17064463 - 17064323
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  17064463 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctcc 17064364  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  17064363 ctccaaaggcactagcgaggctcgaacccgggttctctcgg 17064323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 20983001 - 20983132
Alignment:
Q  383 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 482  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |||| |    
T  20983001 aaaatttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccga 20983100  T
Q  483 aggcactagcggggctcgaacccgggttctct 514  Q
    ||||||||||||||||||||||||| ||||||    
T  20983101 aggcactagcggggctcgaacccggattctct 20983132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 384 - 517
Target Start/End: Complemental strand, 37976683 - 37976546
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattac----atttacctccctc 479  Q
    |||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||| ||||    ||||||||||||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  480 caaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcgg 37976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 384 - 476
Target Start/End: Complemental strand, 41910957 - 41910865
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctcc 41910865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 390 - 484
Target Start/End: Complemental strand, 31673956 - 31673863
Alignment:
Q  390 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 484  Q
    |||| |||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||| |||||| | |||||||| |||| ||||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt-caaagggatttacattttcctctctccaaag 31673863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 500
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||| ||||||| ||| ||||| ||||||| |||||||||||||  ||||||| || |||||||  || ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  484 ggcactagcggggctcg 500  Q
    | ||||| |||||||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 35237052 - 35237102
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 428  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35237052 gttacagaaattttagagtgaggggatggtgcctcagtccaaggcagggaa 35237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 507
Target Start/End: Original strand, 39162859 - 39162977
Alignment:
Q  389 tttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttaca-aaggtaattacatttacct---ccctccaaag 484  Q
    ||||| |||| |||| |||||||||||||||||||  |||||||    ||||||||||||| ||||| |||||| ||||||||||||    ||||||| |    
T  39162859 tttagggtgatgggacggtgccccagtccaaggcacagaagacc----ggctcaaagagcatttacacaaggtatttacatttaccttcctcctccaagg 39162954  T
Q  485 gcactagcggggctcgaacccgg 507  Q
    |||||||  ||||||||||||||    
T  39162955 gcactagttgggctcgaacccgg 39162977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 35237103 - 35237154
Alignment:
Q  465 acatttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    |||||||||||||| ||||| ||||||||||||||||| || | ||||||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcg 35237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 484
Target Start/End: Original strand, 18303352 - 18303409
Alignment:
Q  427 aagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 484  Q
    |||||||||||| | |||||||||||||||| ||| |||| ||||| | |||||||||    
T  18303352 aagaccttcgggtttaaagagcacttacaaaagtatttacgtttactttcctccaaag 18303409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 388 - 517
Target Start/End: Original strand, 30054445 - 30054574
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 487  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  488 ctagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcgg 30054574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 20014597 - 20014458
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  20014597 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccc 20014498  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  20014497 tccaaaggtactagcgggactcgaacccgggttctctcgg 20014458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 30370052 - 30370191
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370052 ggttacatgaattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 30370151  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    |||||||| |||||| ||||||||||||||| ||||||||    
T  30370152 ctccaaagacactagtggggctcgaacccggattctctcg 30370191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 377 - 517
Target Start/End: Complemental strand, 45324146 - 45324006
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  45324146 ggttgcaaaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctcc 45324047  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  45324046 ctccaaaagcactagcggggctggaacccaggttctctcgg 45324006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 12025321 - 12025182
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |    
T  12025321 ggttacaaaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttc 12025222  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcg 516  Q
    ||||||||||||||  ||||||||||||| ||||||||||    
T  12025221 ctccaaaggcactaatggggctcgaacccaggttctctcg 12025182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 388 - 516
Target Start/End: Complemental strand, 21090244 - 21090116
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||    
T  21090244 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggca 21090145  T
Q  488 ctagcggggctcgaacccgggttctctcg 516  Q
    |||||||||||||||||||  ||||||||    
T  21090144 ctagcggggctcgaacccgaattctctcg 21090116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 378 - 499
Target Start/End: Complemental strand, 22024242 - 22024121
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22024242 gttacataaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcca 22024143  T
Q  478 tccaaaggcactagcggggctc 499  Q
    ||||||||||||||| ||||||    
T  22024142 tccaaaggcactagcagggctc 22024121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 379 - 517
Target Start/End: Complemental strand, 4573517 - 4573379
Alignment:
Q  379 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 478  Q
    ||||||||||||||| |||||||||| ||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4573517 ttacaaaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccct 4573418  T
Q  479 ccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||| || ||| |||||||||||||||||||||||||    
T  4573417 ccaaagacattagtggggctcgaacccgggttctctcgg 4573379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 386 - 517
Target Start/End: Original strand, 30850841 - 30850972
Alignment:
Q  386 aattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 485  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  486 cactagcggggctcgaacccgggttctctcgg 517  Q
    ||||| ||||||||||||||| ||||||||||    
T  30850941 cactaacggggctcgaacccgagttctctcgg 30850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 378 - 488
Target Start/End: Original strand, 14498072 - 14498182
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14498072 gttacaaaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccc 14498171  T
Q  478 tccaaaggcac 488  Q
    |||||||||||    
T  14498172 tccaaaggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 377 - 504
Target Start/End: Original strand, 33763246 - 33763373
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33763246 ggttacagaaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33763345  T
Q  477 ctccaaaggcactagcggggctcgaacc 504  Q
    ||| ||||||||||||||||||||||||    
T  33763346 ctctaaaggcactagcggggctcgaacc 33763373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 377 - 491
Target Start/End: Original strand, 33762532 - 33762646
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33762532 ggttacaaaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33762631  T
Q  477 ctccaaaggcactag 491  Q
    ||| |||||||||||    
T  33762632 ctctaaaggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 395 - 473
Target Start/End: Original strand, 35371755 - 35371833
Alignment:
Q  395 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacc 473  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35371755 gtgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 397 - 505
Target Start/End: Original strand, 44438562 - 44438670
Alignment:
Q  397 gaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgggg 496  Q
    ||||||||||| ||||||| ||||||||||||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||| |||||| |    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  497 ctcgaaccc 505  Q
    |||||||||    
T  44438662 ctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 377 - 458
Target Start/End: Complemental strand, 35618115 - 35618034
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaag 458  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35618115 ggttacaaaatttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaag 35618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 17015260 - 17015192
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 445  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17015260 ggttacataaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 517
Target Start/End: Complemental strand, 15034501 - 15034455
Alignment:
Q  471 acctccctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcgg 15034455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 377 - 517
Target Start/End: Original strand, 46494390 - 46494530
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46494390 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 46494489  T
Q  477 ctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  46494490 ctccaaaggcactagtggggctcgaacccgggttctctcgg 46494530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 51066632 - 51066493
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51066632 gttacaaattttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccc 51066533  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  51066532 tccaaaggcactagcggagctcgaacccgagttctctcgg 51066493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 385 - 516
Target Start/End: Complemental strand, 36192673 - 36192542
Alignment:
Q  385 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 484  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  485 gcactagcggggctcgaacccgggttctctcg 516  Q
    ||||||| ||||||||||||||||||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcg 36192542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 51713958 - 51714097
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  51713958 gttacaaaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctccc 51714057  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    | |||||||||||| |||||||||||||||||||||||||    
T  51714058 ttcaaaggcactagtggggctcgaacccgggttctctcgg 51714097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 32139303 - 32139164
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||| ||||| ||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  32139303 gttataaaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccc 32139204  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||| ||||||||||| |||||||| |||||||||||    
T  32139203 tccaaagacactagcggggttcgaacccaggttctctcgg 32139164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 7173584 - 7173717
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||| || |||||  |||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcgg 7173717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 30970383 - 30970516
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||| | ||||||||||||| |||||||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcgg 30970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 378 - 517
Target Start/End: Complemental strand, 50905887 - 50905748
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||  ||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||| |    
T  50905887 gttacaaaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctc 50905788  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  50905787 tccaaaggcactagcggggctcgaacccagattctctcgg 50905748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 384 - 517
Target Start/End: Original strand, 39863777 - 39863910
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| |||||||||| ||| | |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  484 ggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||||||  |||||||||||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcgg 39863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 415 - 517
Target Start/End: Complemental strand, 8740550 - 8740448
Alignment:
Q  415 tccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctct 514  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  515 cgg 517  Q
    |||    
T  8740450 cgg 8740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 378 - 488
Target Start/End: Complemental strand, 29576554 - 29576444
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  29576554 gttacaaaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccc 29576455  T
Q  478 tccaaaggcac 488  Q
    |||||||||||    
T  29576454 tccaaaggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 377 - 489
Target Start/End: Complemental strand, 55231827 - 55231715
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  55231827 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcc 55231728  T
Q  477 ctccaaaggcact 489  Q
    || ||||||||||    
T  55231727 cttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 377 - 502
Target Start/End: Complemental strand, 2570341 - 2570216
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||| || | || ||| ||||||||||    
T  2570341 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctcc 2570242  T
Q  477 ctccaaaggcactagcggggctcgaa 502  Q
    |||||||||||| ||||| |||||||    
T  2570241 ctccaaaggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 47626986 - 47627127
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||| | |||||||| | ||| | ||||| |||||||||||||||    
T  47626986 gttacaaaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctccc 47627085  T
Q  478 tccaaaggcactagcgggg--ctcgaacccgggttctctcgg 517  Q
    | |||||||||||| ||||  |||||| ||||||||||||||    
T  47627086 ttcaaaggcactagtggggctctcgaatccgggttctctcgg 47627127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 676867 - 676766
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||  || |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  676867 gttacaaaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccc 676768  T
Q  478 tc 479  Q
    ||    
T  676767 tc 676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 22304090 - 22304167
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggta 461  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 378 - 491
Target Start/End: Complemental strand, 41523536 - 41523423
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    ||||||||| ||||||  ||| ||||||||| |||| ||||||  |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  41523536 gttacaaaatttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccc 41523437  T
Q  478 tccaaaggcactag 491  Q
    ||||||| ||||||    
T  41523436 tccaaagacactag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 388 - 516
Target Start/End: Original strand, 2294719 - 2294841
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 487  Q
    |||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| || |||||      |||||||||||||||| ||||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacactt------gtaattacatttaccttcctccaaaggca 2294812  T
Q  488 ctagcggggctcgaacccgggttctctcg 516  Q
    ||||||   |||||||||| |||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcg 2294841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 377 - 484
Target Start/End: Original strand, 4080544 - 4080651
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||  | ||||||||||||| ||| |||||| ||| |||||| ||| | ||||||||||| ||||||| ||||||||||||||||||    
T  4080544 ggttacaaaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctcc 4080643  T
Q  477 ctccaaag 484  Q
    ||||||||    
T  4080644 ctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 377 - 506
Target Start/End: Original strand, 50399634 - 50399763
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||| ||| ||||| ||||| ||||| |||||   ||||||| || |||||| ||  |||||||||| |||||||||||||| |||||||||||| |    
T  50399634 ggttacataaaatttagggtgagcggatgatgcccttatccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttc 50399733  T
Q  477 ctccaaaggcactagcggggctcgaacccg 506  Q
    ||||||  ||||||||||||||||||||||    
T  50399734 ctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 387 - 506
Target Start/End: Original strand, 51279035 - 51279154
Alignment:
Q  387 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 486  Q
    ||||||| ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctctaaaagc 51279134  T
Q  487 actagcggggctcgaacccg 506  Q
    | |||  |||||| ||||||    
T  51279135 attagtagggctcaaacccg 51279154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 515
Target Start/End: Complemental strand, 22423479 - 22423378
Alignment:
Q  414 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctc 513  Q
    |||||| ||||||||||||||||  | |||||| |||||||||| ||| ||||||||||||||||||||||| |||| | ||||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  514 tc 515  Q
    ||    
T  22423379 tc 22423378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 23084459 - 23084530
Alignment:
Q  379 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcac 450  Q
    |||||||| |||||| |||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  23084459 ttacaaaatttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 37990606 - 37990663
Alignment:
Q  396 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactta 453  Q
    |||||| ||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  37990606 tgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 383 - 482
Target Start/End: Complemental strand, 40012646 - 40012548
Alignment:
Q  383 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 482  Q
    ||||| ||||| ||||| ||| |||| || ||||||| | ||||||||||||  | ||||| ||||||| ||||||| | ||||||||||||||||||||    
T  40012646 aaaaaatttagtgtgagaggacggtgtcctagtccaacgtagggaagaccttatgactcaa-gagcactcacaaagggatttacatttacctccctccaa 40012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 388 - 431
Target Start/End: Complemental strand, 51066283 - 51066240
Alignment:
Q  388 ttttagagtgaggggatggtgccccagtccaaggcagggaagac 431  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  51066283 ttttagggtgaggggatggtgccccagttcaaggcagggaagac 51066240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 35163743 - 35163882
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35163743 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 35163842  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||||||| ||| ||||||||||||| |||||||||||    
T  35163843 tccaaaggcattagtggggctcgaaccctggttctctcgg 35163882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 496
Target Start/End: Complemental strand, 20685465 - 20685346
Alignment:
Q  377 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 476  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20685465 ggttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 20685366  T
Q  477 ctccaaaggcactagcgggg 496  Q
    ||||||||||||||||||||    
T  20685365 ctccaaaggcactagcgggg 20685346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 378 - 515
Target Start/End: Original strand, 19686820 - 19686957
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||| ||||||||| ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19686820 gttacagaaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 19686919  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctc 515  Q
    | |||||||||||| ||||||||||||| |||||||||    
T  19686920 tacaaaggcactagaggggctcgaacccaggttctctc 19686957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 378 - 517
Target Start/End: Original strand, 2711733 - 2711866
Alignment:
Q  378 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 477  Q
    |||||||||||||||| ||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2711733 gttacaaaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2711826  T
Q  478 tccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    |||||| ||||||| |||||||||| || |||||| ||||    
T  2711827 tccaaaagcactagtggggctcgaatccaggttctatcgg 2711866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 383 - 495
Target Start/End: Complemental strand, 17948814 - 17948702
Alignment:
Q  383 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 482  Q
    ||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  17948814 aaaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaa 17948715  T
Q  483 aggcactagcggg 495  Q
    || ||||||||||    
T  17948714 agacactagcggg 17948702  T

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Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 517
Target Start/End: Original strand, 14505519 - 14505655
Alignment:
Q  379 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 478  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || ||||||  | ||||||||||| ||||||||||||||||    
T  14505519 ttacaaaaattttag-gtgaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccct 14505616  T
Q  479 ccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||| ||||||||||||||||||  |||| ||||||||    
T  14505617 ccaaaagcactagcggggctcgaattcgggatctctcgg 14505655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 395 - 490
Target Start/End: Complemental strand, 15070247 - 15070152
Alignment:
Q  395 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcacta 490  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||    
T  15070247 gtgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 463 - 517
Target Start/End: Complemental strand, 14496406 - 14496352
Alignment:
Q  463 ttacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 517  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcgg 14496352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 414 - 492
Target Start/End: Complemental strand, 24336718 - 24336640
Alignment:
Q  414 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagc 492  Q
    ||||||||||||||||| |||| |||||||| | |||||||||| ||| ||||||||||||||||||||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagc 24336640  T

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Target: scaffold0021 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 384 - 516
Target Start/End: Original strand, 107691 - 107822
Alignment:
Q  384 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 483  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107691 aaaattttag-gtgaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  484 ggcactagcggggctcgaacccgggttctctcg 516  Q
    |||||||||||||||||||| ||||||||||||    
T  107790 ggcactagcggggctcgaactcgggttctctcg 107822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 6994 - 7099
Alignment:
Q  410 cccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggt 509  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |    
T  6994 cccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggat 7093  T
Q  510 tctctc 515  Q
    ||||||    
T  7094 tctctc 7099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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