View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_11 (Length: 575)

Name: NF0549_low_11
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_11
NF0549_low_11
[»] chr3 (7 HSPs)
chr3 (30-560)||(48922554-48923084)
chr3 (337-560)||(5739490-5739713)
chr3 (337-560)||(5776602-5776825)
chr3 (363-483)||(48607008-48607128)
chr3 (459-529)||(32812618-32812688)
chr3 (511-560)||(48607131-48607180)
chr3 (459-529)||(776397-776466)
[»] chr2 (2 HSPs)
chr2 (307-560)||(9794969-9795219)
chr2 (342-560)||(43784756-43784974)
[»] chr8 (4 HSPs)
chr8 (337-560)||(26665923-26666146)
chr8 (342-560)||(4783170-4783385)
chr8 (342-448)||(39479413-39479519)
chr8 (441-509)||(39478724-39478789)
[»] chr1 (2 HSPs)
chr1 (367-560)||(23761116-23761309)
chr1 (28-130)||(3258145-3258247)
[»] chr6 (2 HSPs)
chr6 (337-560)||(30338620-30338843)
chr6 (344-389)||(631302-631347)
[»] chr4 (1 HSPs)
chr4 (337-560)||(22734445-22734668)


Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 30 - 560
Target Start/End: Complemental strand, 48923084 - 48922554
Alignment:
Q  30 aagtcatctatccagcagttattagttcagcaaatggctacttctttgacaagagatcctaatttcgcagcagcacttgccactgccatttctggaagaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48923084 aagtcatctatccagcagttattagttcagcaaatggctacttctttgacaagagatcctaatttcgcagcagcacttgccactgccatttctggaagaa 48922985  T
Q  130 taataattctggatgtggaaaacccgaagtaaattcacacttgcatgattttgttatctgtatggctatattcgataccggccttgagatatttcgtgtc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48922984 taataattctggatgtggaaaacccgaagtaaattcacacttgcatgattttgttatctgtatggctatattcgatgccggccttgagatatttcgtgtc 48922885  T
Q  230 ttaggtcaacaaaataatgacatctcaatttgaaaagaaaaagaaaatcggtcaaaatattgaaaacagaagtgttattatataaactagacttttgacc 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48922884 ttaggtcaacaaaataatgacatctcaatttgaaaagaaaaagaaaatcggtcaaaatattgaaaacagaagtgttattatataaactagacttttgatc 48922785  T
Q  330 cttacgataccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaattt 429  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48922784 cgtgcgataccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagccctaattt 48922685  T
Q  430 aaaataatgataacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattt 529  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  48922684 aaaataatgataacaaatcgataaggtcatagtctagttattgttaacgttttacatttatcatcatacgttacgaaatatttcacggtaaacgacattt 48922585  T
Q  530 tacaaggagaacactcttctttcttctatat 560  Q
    |||| ||||||||||||||||| ||||||||    
T  48922584 tacacggagaacactcttctttattctatat 48922554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 337 - 560
Target Start/End: Original strand, 5739490 - 5739713
Alignment:
Q  337 taccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataa 436  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||    
T  5739490 taccaaatgaaatataaacgaaaaagttatagcataatgaatgtatagtaaacaataaaagtaggatgataaagtttaagttagccctaatttaaaataa 5739589  T
Q  437 tgataacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaagg 536  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||| | | ||    
T  5739590 tgataacaaatcgataaggtcatagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttgataggg 5739689  T
Q  537 agaacactcttctttcttctatat 560  Q
    ||||||||||||||||||||||||    
T  5739690 agaacactcttctttcttctatat 5739713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 337 - 560
Target Start/End: Original strand, 5776602 - 5776825
Alignment:
Q  337 taccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataa 436  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||    
T  5776602 taccaaatgaaatataaacgaaaaagttatagcataatgaatgtatagtaaacaataaaagtaggatgataaagtttaagttagccctaatttaaaataa 5776701  T
Q  437 tgataacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaagg 536  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||| | | ||    
T  5776702 tgataacaaatcgataaggtcatagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttgataggg 5776801  T
Q  537 agaacactcttctttcttctatat 560  Q
    ||||||||||||||||||||||||    
T  5776802 agaacactcttctttcttctatat 5776825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 363 - 483
Target Start/End: Original strand, 48607008 - 48607128
Alignment:
Q  363 ttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagt 462  Q
    ||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48607008 ttataacataatgaatgtaaagtaaccaataaaagtagtatgataaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagt 48607107  T
Q  463 ctaattattgttaacgtttta 483  Q
    ||| |||||||||||||||||    
T  48607108 ctagttattgttaacgtttta 48607128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 529
Target Start/End: Original strand, 32812618 - 32812688
Alignment:
Q  459 tagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattt 529  Q
    |||||||||||||||||| ||||||| || ||||| |||| |||| |||||||||||| |||||| |||||    
T  32812618 tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcattt 32812688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 48607131 - 48607180
Alignment:
Q  511 ttcatggtaaacgacattttacaaggagaacactcttctttcttctatat 560  Q
    ||||||||||| ||||||| | | ||||||||||||||||||||||||||    
T  48607131 ttcatggtaaatgacatttgatagggagaacactcttctttcttctatat 48607180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 529
Target Start/End: Complemental strand, 776466 - 776397
Alignment:
Q  459 tagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattt 529  Q
    |||||||||||||||||| |||||||  | ||||| |||| |||| |||||||||||| |||||| |||||    
T  776466 tagtctaattattgttaaagttttat-gtcatcattatacattacaaaatatttcatgataaacgtcattt 776397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 307 - 560
Target Start/End: Complemental strand, 9795219 - 9794969
Alignment:
Q  307 ttatataaactagacttttgacccttacgataccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgac 406  Q
    ||||||| |||||||||||||||| | |||  || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  9795219 ttatatatactagacttttgacccgtgcga--ccaaatgaaatataaacgaataagttatagcataatgaatgtatagtaaccaataaaagtagcatgat 9795122  T
Q  407 aaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaa 506  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  9795121 aaagtttaagttagccataatttaaaataatgataacaaatcgataagg-catagtctagttattgttaacgttttacatttatcatcatatgttacgaa 9795023  T
Q  507 atatttcatggtaaacgacattttacaaggagaacactcttctttcttctatat 560  Q
    ||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  9795022 atatttcatggtaaacgacatttgataaggagaacactcttcattcttctatat 9794969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 342 - 560
Target Start/End: Complemental strand, 43784974 - 43784756
Alignment:
Q  342 aatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataatgata 441  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  43784974 aatgaaatataaacgaataagttataacataatgaatgtatagtaaccaataaaagtagcatgataaagtttaagttagccctaatttaaaataatgata 43784875  T
Q  442 acaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaaggagaac 541  Q
    |||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||    
T  43784874 acaaatcgataaggtcatagtctagttattgttaatgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttgatagggagaac 43784775  T
Q  542 actcttctttcttctatat 560  Q
    |||||||||||||||||||    
T  43784774 actcttctttcttctatat 43784756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 4e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 337 - 560
Target Start/End: Complemental strand, 26666146 - 26665923
Alignment:
Q  337 taccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataa 436  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  26666146 taccaaatgaaatataaacgaataagttataacataatgaatgtatagtaaccaataaaagtagcatgataaagtttaagttagccctaatttaaaataa 26666047  T
Q  437 tgataacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaagg 536  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| | | ||    
T  26666046 tgataacaaatcgataaggtcatattctagttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggttaacgacatttgataggg 26665947  T
Q  537 agaacactcttctttcttctatat 560  Q
    ||||||||||||||||||||||||    
T  26665946 agaacactcttctttcttctatat 26665923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 342 - 560
Target Start/End: Complemental strand, 4783385 - 4783170
Alignment:
Q  342 aatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataatgata 441  Q
    |||||||||||| |||| |||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  4783385 aatgaaatataatcgaataagttatagcataatgaatgtacaataaccaataaaaatagcatgataaagtttaagttagccctaatttaaaataatgata 4783286  T
Q  442 acaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaaggagaac 541  Q
    |||||||||||||||||||||||| |||||||||| |||||| ||   ||||||||||||| |||||| ||||||||||||||||||| | |  ||||||    
T  4783285 acaaatcgataaggtcatagtctagttattgttaatgttttacat---tcatcatacgttatgaaataattcatggtaaacgacatttaatagagagaac 4783189  T
Q  542 actcttctttcttctatat 560  Q
    |||||||||||||||||||    
T  4783188 actcttctttcttctatat 4783170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 342 - 448
Target Start/End: Complemental strand, 39479519 - 39479413
Alignment:
Q  342 aatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataatgata 441  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||    
T  39479519 aatgaaatataaatgaataagttatagcataataaatgtatagtaaccaataaaaatagcatgataaagtttaagttaaccctaatttaaaataatgata 39479420  T
Q  442 acaaatc 448  Q
    |||||||    
T  39479419 acaaatc 39479413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 441 - 509
Target Start/End: Complemental strand, 39478789 - 39478724
Alignment:
Q  441 aacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaata 509  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||   ||||||||||||||||||||    
T  39478789 aacaaatcgataacgtcatagtctagttattgttaacgttttacat---tcatcatacgttacgaaata 39478724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 367 - 560
Target Start/End: Complemental strand, 23761309 - 23761116
Alignment:
Q  367 agcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataatgataacaaatcgataaggtcatagtctaa 466  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  23761309 agcataatgaatgtatagtaaccaataaaagtagcataataaagtttaagttagccctaatttaaaataatgataacaaatcgataaggtcatagtctag 23761210  T
Q  467 ttattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaaggagaacactcttctttcttctatat 560  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||    
T  23761209 ttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttgatagggagaacactattctttcttctatat 23761116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 3258247 - 3258145
Alignment:
Q  28 caaagtcatctatccagcagttattagttcagcaaatggctacttctttgacaagagatcctaatttcgcagcagcacttgccactgccatttctggaag 127  Q
    |||| |||||||||||||| || || ||||| ||||||||||||||||||||||  |||||||||||| | ||||||||||||||||| |||||||||||    
T  3258247 caaaatcatctatccagcaatttttggttcaacaaatggctacttctttgacaaatgatcctaatttcactgcagcacttgccactgctatttctggaag 3258148  T
Q  128 aat 130  Q
    |||    
T  3258147 aat 3258145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 337 - 560
Target Start/End: Original strand, 30338620 - 30338843
Alignment:
Q  337 taccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataa 436  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||    
T  30338620 taccaaatgaaatataaacgaataagttatagcataatgaatgtatagtaacaaataaaagtagcatgataaagtttaagtttgccctaatttaaaataa 30338719  T
Q  437 tgataacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaagg 536  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||| |||  ||| | |||||||||||||||||||||||||||||||||| | | |     
T  30338720 tgataacaaatcgataaggtcatagtctagttattgttaacattttacattcgtcaacttacgttacgaaatatttcatggtaaacgacatttgataggt 30338819  T
Q  537 agaacactcttctttcttctatat 560  Q
    |||||| |||||||||||||||||    
T  30338820 agaacattcttctttcttctatat 30338843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 631302 - 631347
Alignment:
Q  344 tgaaatataaacgaagaagttatagcataatgaatgtatagtaacc 389  Q
    |||||||||||| || ||||||||||||||||| | ||||||||||    
T  631302 tgaaatataaacaaataagttatagcataatgagtatatagtaacc 631347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 337 - 560
Target Start/End: Complemental strand, 22734668 - 22734445
Alignment:
Q  337 taccgaatgaaatataaacgaagaagttatagcataatgaatgtatagtaaccaataaaagtagcatgacaaagtttaagttagtcctaatttaaaataa 436  Q
    |||| ||||||||||||||||  ||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||    
T  22734668 taccaaatgaaatataaacgagtaaggtataggataatgaatgtatagtaaccaatagaagtagcatgataaagtttaagttagccctaatataaaataa 22734569  T
Q  437 tgataacaaatcgataaggtcatagtctaattattgttaacgttttatatttatcatcatacgttacgaaatatttcatggtaaacgacattttacaagg 536  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |  ||||||||||||| ||| |||||| | | ||    
T  22734568 tgataacaaatcgataaggtcatagtctagttattgttaacgttttacattcatcatcatacgttgcagaatatttcatggttaacaacatttgataggg 22734469  T
Q  537 agaacactcttctttcttctatat 560  Q
    |||||| |||||||||||||||||    
T  22734468 agaacattcttctttcttctatat 22734445  T

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