View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_12 (Length: 570)
Name: NF0549_low_12
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 547
Target Start/End: Complemental strand, 47804886 - 47804359
Alignment:
| Q |
20 |
cagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
47804886 |
cagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaacaagagaaatgat |
47804787 |
T |
|
| Q |
120 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804786 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
47804687 |
T |
|
| Q |
220 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804686 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgttt |
47804587 |
T |
|
| Q |
320 |
cgataactcgttcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatcc |
419 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804586 |
cgataactcgatcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatcc |
47804487 |
T |
|
| Q |
420 |
aagttggacaaccggctttccagacttgtctgatcatcgatatccttgtctgccgaacaannnnnnnnnncatcgtgattttcctttccagatgaatcat |
519 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
47804486 |
aagttggacaaccggctttccagacatgtctgatcatcgatatccttgtctgccgaacaattttttttttcatcgtgattttcctttctagatgaatcat |
47804387 |
T |
|
| Q |
520 |
ctgaatttttcgcaatgtgaaactcgag |
547 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
47804386 |
ctgaatttttcgcaatgtgaaactcgag |
47804359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 47807448 - 47807066
Alignment:
| Q |
20 |
cagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgat |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47807448 |
cagaaatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgat |
47807349 |
T |
|
| Q |
120 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807348 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
47807249 |
T |
|
| Q |
220 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgttt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
47807248 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaatcaccctactcgcaaagctttcaggctgttt |
47807149 |
T |
|
| Q |
320 |
cgataactcgttcaccaagctttgttttaggtagataagcttgatattattggcattaatggatgcaaaacatccaggtttta |
402 |
Q |
| |
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|||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
47807148 |
cgataactcgaataccaagcttcgctttaggtagataagcttgatatttttggcattaatcgatgcaaaacatccaggtttta |
47807066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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